LOCUS       CP000303                6155 bp    DNA     linear   BCT 31-JAN-2014
DEFINITION  Bifidobacterium breve UCC2003, complete genome.
ACCESSION   CP000303
VERSION     CP000303.1
DBLINK      BioProject: PRJNA13487
            BioSample: SAMN02604112
KEYWORDS    .
SOURCE      Bifidobacterium breve UCC2003
  ORGANISM  Bifidobacterium breve UCC2003
            Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae;
            Bifidobacterium.
REFERENCE   1  (bases 1 to 6155)
  AUTHORS   O'Connell Motherway,M., Zomer,A., Leahy,S.C., Reunanen,J.,
            Bottacini,F., Claesson,M.J., O'Brien,F., Flynn,K., Casey,P.G.,
            Moreno Munoz,J.A., Kearney,B., Houston,A.M., O'Mahony,C.,
            Higgins,D.G., Shanahan,F., Palva,A., de Vos,W.M., Fitzgerald,G.F.,
            Ventura,M., O'Toole,P.W. and van Sinderen,D.
  TITLE     Functional genome analysis of Bifidobacterium breve UCC2003 reveals
            type IVb tight adherence (Tad) pili as an essential and conserved
            host-colonization factor
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. (2011) In press
   PUBMED   21690406
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 6155)
  AUTHORS   O'Connell Motherway,M., Zomer,A., Leahy,S., Reunanen,J.,
            Bottacini,F., Claesson,M., O'Brien,F., O'Flynn,K., Casey,P.,
            Moreno-Munoz,J., Higgins,D.G., Shanahan,F., de Vos,W.,
            Fitzgerald,G.F., Ventura,M., O'Toole,P. and van Sinderen,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-MAR-2006) Department of Microbiology, Alimentary
            Pharmabiotic Centre, University College Cork, College Road, Cork,
            Munster, Ireland
COMMENT     Source DNA or strain is available from Douwe van Sinderen,
            d.vansinderen@ucc.ie.
FEATURES             Location/Qualifiers
     source          1..6155
                     /organism="Bifidobacterium breve UCC2003"
                     /mol_type="genomic DNA"
                     /strain="UCC2003"
                     /db_xref="taxon:326426"
     gene            1..1005
                     /gene="cldR"
                     /locus_tag="Bbr_0105"
     CDS             1..1005
                     /gene="cldR"
                     /locus_tag="Bbr_0105"
                     /codon_start=1
                     /transl_table=11
                     /product="STP|LacI,STP|Peripla_BP_3"
                     /protein_id="ABE94817.1"
                     /translation="MANGQKATIRDVAKRAGVAVSTASRALSHGSASKATREKVFRAAG
                     ELNFVPNPAARQLMSGRSNIVAIAIPEHTDFIFRDMFVAGILGELSRAFSERRMLPFLA
                     LTELQDTESLERLLRDSSADGVVVLSFHYSRQLAQVFHDFDKPTVFIGRPFPRMRYPYV
                     DVDNEGAAYCAAELLVERGRRNIGIIAGPDDMMAPKQRTMGCVNGLADQGMKPLAVISG
                     EYTAEHGFEACERILEQYPEVDGVFAQSDQIAVGVLQALAKHGRQVPNDVSVIGFDDFP
                     VATMTNPKLTTFAQPLHDMAQVIAEMLCWRLEHGEWNTVAQVLPASLIKRDSV"
     gene            1186..2493
                     /gene="cldE"
                     /locus_tag="Bbr_0106"
     CDS             1186..2493
                     /gene="cldE"
                     /locus_tag="Bbr_0106"
                     /codon_start=1
                     /transl_table=11
                     /product="gnl|TC-DB|Q9X9R7|3.A.1.1.23"
                     /protein_id="ABE94818.1"
                     /translation="MKRSKAMFSAVLAVATVVSLAACGTANNSGNATTKDGKTIIKIQT
                     FNNFGYGKPTNERPSADLWSKYEKLHPNIKIEETIASGSDEARSAFNTAISSGSDAYDI
                     YAADIAWMPSVLAISDSFMDLSSYLKKNDWLDWKVEGGKANGKIIGAGNDIGPTAVCYR
                     SDLFQKAGLPTDRTEVAKMLGGDSATWDQYFKVGREYTQKTGLPWYDAMGGLWGTMKSQ
                     MKESYVKKDGTIVATTDKMKKNFETLTATTDMSAHLTQWSDDWNAQFKSDKGFATIMCP
                     AWLVNNIKGNAGSDFKGWDIADVTPGGGSNQGGSWLVVPESSKVKEEAAKLVAWLTAPE
                     QQVATFKAASNYPSSPTAMANDTVSNKVDTFLNNAPTGKIFADRAKAVKVVPYMGAQYF
                     DIDSKFGNALDRVDVNKEQTPSQAWKQYVDDVKSLS"
     gene            2572..3693
                     /gene="cldF"
                     /locus_tag="Bbr_0107"
     CDS             2572..3693
                     /gene="cldF"
                     /locus_tag="Bbr_0107"
                     /codon_start=1
                     /transl_table=11
                     /product="gnl|TC-DB|Q9X9R6|3.A.1.1.23"
                     /protein_id="ABE94819.1"
                     /translation="MTARQSHGQAKSKQDWHSRLEMFEWKASPYLYIAPFFILFLIVGL
                     FPLLYTMWIATRQFNTLTGDAGFAVCGSTCGTTNASWFGNFMWVLHQPTFYVALRNSVS
                     IFLLSSVPQIIIALWLAWVLDANLKAKTFWRMGVLLPYIVAPSAAGIIFSQVFSDKMGA
                     INVLLQQIGMQPIMWHGNTFWSHVAIATIVNWRYIGYNTLILLAAMQAIPRDVLEAAVV
                     DGAGKWRTFRSVTLPMLRPTLIFVIITSTIGGLQIFDEPQMFHNGASAGGGANNQYLTV
                     SLYLYKLGFVSVTPGQPNLGRAAAVAWILFLIVVAISLLNYALTQRLATGGQSRESKEA
                     ARLSAQRDEAERQKAIRTGVNGRMDAQQVAERK"
     gene            3701..4648
                     /gene="cldG"
                     /locus_tag="Bbr_0108"
     CDS             3701..4648
                     /gene="cldG"
                     /locus_tag="Bbr_0108"
                     /codon_start=1
                     /transl_table=11
                     /product="gnl|TC-DB|Q9X9R5|3.A.1.1.23"
                     /protein_id="ABE94820.1"
                     /translation="MVDLTNESDKREVGVPALEQVYGKSVARAAKRQRNARLGMTSEGR
                     KPGWGSYAILIVTLLIFVFPLYYALSIASQNTPSNQYGVRALIPGTALLHNLSRALGEL
                     KFWQALGGTVTVAVVVSVSTVFFSTLAGYSFAKLHFRGRSVLLTAVVATMTIPQQLTVV
                     PLYIMANKAGLYGNLLAVIIPGLVSAFGVFWMTQYITDALPYELIEAARVDGCSMFRTF
                     ISVGVPAARPAASMLFLFTFIGQWTNYFWPMLVLGANKSYMLTTAAAALKGAYFTDYTI
                     VMSGVILTTAPLLLLFFVAGKQLVAGIMAGAVKG"
     gene            4755..6155
                     /gene="cldC"
                     /locus_tag="Bbr_0109"
     CDS             4755..6155
                     /gene="cldC"
                     /locus_tag="Bbr_0109"
                     /EC_number="3.2.1.21"
                     /codon_start=1
                     /transl_table=11
                     /product="GH1"
                     /protein_id="ABE94821.1"
                     /translation="MTFVFPKNFTWGVATASYQVEGAIHEDGRAPSIWDAFCAVPGAIE
                     DHSSGEVACDEYHRYPEDITLLKELGVNAYRLSIAWPRIVPLADGKVNSKGVEHYIKVL
                     DALRDAGIRPVVTLYHWDLPQYLEDQGGWANRDTALRYGDYVHALAEAFGDRVDTWTTL
                     NEPWCAAYLGYGNGIHAPGVRDYGKALSAVHHLNLAHGLGALAVHDTLDERAKVSVTLN
                     LSACVAQSDSEADRMAKHRNDLLSNEVFLGPMLDGAYDPEIFDVTTDYTDWSFIRDDDL
                     KTIRQPVQCLGINYYSSTHVKGVTDPAECERRRNDHMQAVPAQDIVDALPPEGELTDMG
                     WNQEPRVLTEMLVGLAKRYPGLDLMVTENGSAWKDEVTEDSSAPGGRIIHDPKRVAYLN
                     HHIRAIADAIEAGVPVVGYFAWSLLDNFEWAFGYSKRFGIIGVDYETQKRIWKDSAYRY
                     RQIIQEGI"
ORIGIN
        1 gtggcaaacg ggcagaaggc aactattcgt gacgtggcta agagggccgg cgtggctgtt
       61 tcgacggctt cgcgtgcgtt gagtcatggc tcggcttcaa aagcgacccg tgagaaggtc
      121 tttcgtgccg caggggagtt gaattttgta ccgaatccag cagcacgtca gttgatgagt
      181 gggcgaagca atattgtcgc catagccatt cctgaacata cggatttcat cttcagggat
      241 atgttcgtcg cggggattct tggtgagctt tcgagggcat tcagcgagcg tcgtatgtta
      301 ccgttccttg cgttgaccga actgcaggac acggaatccc tggaacgtct gctacgtgat
      361 tccagcgcag acggagtggt ggtgctgagc ttccactatt cacgacaatt ggcacaggtc
      421 tttcatgatt tcgataagcc cacggtattc ataggccgcc cgtttcctcg tatgagatat
      481 ccgtatgtgg acgtcgataa tgagggggcg gcgtactgtg ctgcggaatt gttggttgag
      541 agaggccgca gaaatatagg catcattgcc gggccggacg atatgatggc accgaagcag
      601 cgcactatgg ggtgtgtgaa cggtcttgct gaccagggga tgaagccgtt ggcagtgatc
      661 tcgggagaat atactgcgga gcacggtttt gaggcatgcg aaaggattct cgagcagtat
      721 cccgaagtgg atggtgtttt tgcgcagtcc gatcagatcg cagtgggtgt gttgcaggcg
      781 ctggccaagc atggaaggca agtgcccaat gatgtatcgg tgattgggtt cgatgatttc
      841 ccggttgcga cgatgacgaa tccgaaactg accacttttg cccagccgtt gcacgatatg
      901 gctcaggtga ttgccgaaat gctgtgttgg cggttggagc acggggaatg gaacactgtg
      961 gcacaagtat tgcctgcgtc actaatcaaa cgtgatagcg tctgatggta ttgcccgaat
     1021 cagcggttgt attttttgaa atccatgcct gaatgctaat ccggcatgga tttgttgttt
     1081 ttcgtagggt gtgctatctt agaactgttt ttggaaacgg ttccaaaaat aaagggaagt
     1141 gatgaggctt tccgaatcga gcgcagtgat gcggaaggag ataaaatgaa gaggtcaaag
     1201 gcgatgtttt cagctgtgtt agctgttgct accgtggtga gcctcgcagc ttgcggtact
     1261 gctaataata gtggaaacgc taccactaaa gatggaaaaa cgattatcaa gattcaaacc
     1321 tttaataatt ttggctatgg taagcccacc aatgagcgcc caagtgctga cttgtggagc
     1381 aagtacgaaa agctgcatcc gaacatcaaa atcgaagaga ctatcgcctc gggttccgat
     1441 gaggcgcgtt cggctttcaa cacggccatc tcttccggtt ctgacgccta cgacatctat
     1501 gctgccgaca ttgcctggat gccatcagtg cttgcgatct ctgattcctt catggatctg
     1561 agcagctacc tcaaaaagaa cgattggctt gactggaagg tcgaaggtgg caaggccaat
     1621 ggcaagataa ttggcgcagg taacgatatc ggtccgactg ccgtgtgcta ccgttccgat
     1681 ttgttccaga aggctggtct acccaccgat cgtaccgaag tcgccaagat gctcggtgga
     1741 gattctgcga cctgggatca gtacttcaag gtaggccgtg aatataccca gaagactggc
     1801 ttgccgtggt atgacgccat gggcgggcta tggggcacca tgaaatccca aatgaaggaa
     1861 tcctacgtca agaaggacgg caccatcgtt gccaccactg acaaaatgaa gaagaacttc
     1921 gaaacgctga ctgccaccac cgatatgtcc gcccatctga ctcagtggag cgatgattgg
     1981 aacgcgcaat tcaagtctga taagggcttt gccaccatca tgtgtcccgc atggctggtc
     2041 aacaacatca aaggcaatgc aggctccgat ttcaagggat gggacatcgc tgatgtcact
     2101 cctggtggcg gttccaacca aggtggttcc tggcttgtag tgccggagag ctccaaggta
     2161 aaggaggagg ccgccaaact ggtggcatgg cttaccgccc ctgagcagca ggtagctacc
     2221 ttcaaggccg cttcgaacta tccaagctcg ccgactgcaa tggccaatga taccgtttca
     2281 aacaaagtgg ataccttcct caacaatgct ccgaccggca agatcttcgc agaccgagcg
     2341 aaggctgtga aggttgttcc atatatgggt gcccagtatt tcgatatcga ttcgaagttc
     2401 ggcaacgcat tggatcgtgt ggatgtcaat aaggagcaga caccgtccca ggcgtggaag
     2461 caatacgtcg acgacgtgaa gtccctgtcc tgatcgactg gcgcatcggg gaggatgcgt
     2521 cgctgggtgt acatcctccc cgatgagaga tttatttgga aggaaaacaa tatgacggca
     2581 cggcaaagtc acggccaagc caagtcgaaa caagactggc atagccggtt ggagatgttc
     2641 gaatggaaag cgtctccata cctttacatc gctccattct tcatcctctt cctcatagtt
     2701 gggctgtttc cgctgcttta caccatgtgg atcgcgacta ggcagttcaa cacgctcacc
     2761 ggcgatgctg gattcgcggt gtgcggttcc acttgcggca ccacgaatgc ttcttggttc
     2821 ggcaacttca tgtgggtgct gcatcagccg accttctacg tggcattgcg caactcagtc
     2881 tctatcttcc tgctgagctc cgtaccgcag atcatcatcg cgctatggct cgcatgggtt
     2941 cttgacgcaa atctcaaagc taagacgttc tggcgtatgg gcgtgttgct gccgtacatc
     3001 gtcgcgcctt ccgctgcggg cattatcttt tcgcaggttt tctccgacaa aatgggtgcc
     3061 atcaatgtac tgctacagca aatcggcatg cagccgatca tgtggcacgg caacacattc
     3121 tggtcgcatg tcgccatcgc gaccattgtt aactggcgct atatcggtta caacacgctg
     3181 attttgcttg ccgctatgca ggccattccc cgcgatgtgc ttgaagcggc cgtcgtggat
     3241 ggtgcgggca aatggcgtac gttccgttct gtcactctgc cgatgcttcg gccgacgcta
     3301 atcttcgtca tcatcacctc gaccattggt ggtttgcaga tctttgatga acctcagatg
     3361 ttccataacg gtgcttccgc cggtggcggt gcgaacaacc aatacctaac cgttagcctg
     3421 tacctgtaca agctcggctt cgtcagtgtg acccccggac agccgaacct gggcagagcg
     3481 gccgctgtgg catggatcct cttcctgatt gttgtcgcta tctccttgct gaattatgcg
     3541 ctgacccagc gtcttgccac aggcgggcaa tccagagagt ccaaggaagc cgcgcgactt
     3601 tctgcgcaac gggatgaagc cgaacgtcag aaggccatcc gcactggcgt gaatggccgc
     3661 atggacgcac agcaggtggc agagagaaag tgaggaaatc atggttgatt tgaccaatga
     3721 atccgataag agggaagtgg gcgttccggc cctggaacag gtctatggaa agagtgtcgc
     3781 gcgtgcggcc aaacggcagc gcaatgcgcg tctcggcatg acatccgaag gacgtaagcc
     3841 tggttgggga agctatgcaa ttcttattgt cacactgctg atatttgtat tcccgttgta
     3901 ttacgcgttg tccatcgcat cgcagaatac gccaagcaac cagtatggtg tgagagctct
     3961 gattccgggc actgcactgc tgcataatct cagtcgcgcg ctcggcgaac tgaaattctg
     4021 gcaggcttta ggcggaaccg tcaccgtggc cgtggtcgta tccgtatcca ccgtgttctt
     4081 cagcacgctt gccggctact catttgccaa attgcatttc cgcggtcgca gcgttctgct
     4141 tactgcagtg gtcgccacta tgaccattcc gcagcagctc actgttgtgc cactgtatat
     4201 catggccaac aaggccggat tgtacggcaa tctgctcgcc gtgatcatcc cgggtctggt
     4261 cagtgcattc ggcgtgttct ggatgaccca gtacatcacc gacgccttgc cttacgaatt
     4321 gattgaggcg gcgcgagtgg atggctgcag catgttccgc accttcatct ccgtcggcgt
     4381 tcccgccgcg cgtcctgcgg cctccatgct gtttctgttt acgttcatcg gccaatggac
     4441 gaactatttc tggcccatgc tggtgctcgg cgcaaacaag agctacatgc tcaccaccgc
     4501 tgcggctgca ttgaagggcg cgtacttcac cgattacacc atcgtgatgt ccggtgtcat
     4561 tcttactacg gcgccgttgc tgttgctatt cttcgtggca ggcaagcaat tggtcgccgg
     4621 catcatggcc ggtgcggtga agggctgatt ctcagttccg atgttctgaa atttcacgct
     4681 ctgctcggta cacaatgaac cggtcatgcc gggcggagcg ttttcacttt ccataattca
     4741 tgaggagctt gattatgaca ttcgtttttc cgaaaaattt cacatggggg gtggcgacag
     4801 cctcgtacca ggtcgaaggt gccattcacg aagacgggcg cgcgccatcc atctgggatg
     4861 ctttctgtgc ggttcccggt gctatcgaag atcattcctc cggcgaggtg gcctgcgacg
     4921 aataccaccg atacccagaa gacataacgt tgcttaaaga acttggcgtc aacgcctata
     4981 ggctttccat tgcatggcca cgaatcgttc ccttggctga cggcaaggtc aattccaagg
     5041 gcgtggagca ttacatcaag gtattagatg ccctacgcga tgcgggtatt cggcctgtcg
     5101 tcacgttata tcactgggat ttgccgcaat acttggaaga ccagggaggc tgggcgaatc
     5161 gcgatacggc attgcggtac ggcgattacg tacatgcttt ggccgaggct ttcggcgatc
     5221 gcgtcgatac atggactacg ttgaatgagc catggtgcgc ggcatatctc ggatatggca
     5281 atggcatcca tgcgccgggt gtgcgtgatt acggcaaggc gctgtcggcg gtgcatcact
     5341 tgaatcttgc ccatggctta ggcgctttgg ctgttcacga cacactcgac gagcgggcca
     5401 aggtatccgt cactttgaac ttgagcgctt gcgtcgcgca aagcgacagt gaggcggatc
     5461 gtatggccaa gcatcgtaat gatctgcttt ccaatgaggt gtttctcggt ccgatgctcg
     5521 atggcgccta tgatcctgaa atcttcgacg ttaccaccga ctacaccgat tggtcgttca
     5581 tccgagacga tgatctgaag acgattcgcc agcctgttca atgcttgggc attaactact
     5641 attcctccac tcacgtgaaa ggtgtgaccg atcctgcgga gtgcgagcgg cgtagaaacg
     5701 atcacatgca ggctgtgccg gcgcaggata tcgttgatgc attgccgcct gaaggcgaac
     5761 tgacggatat ggggtggaat caggaaccgc gggtcctgac cgaaatgctg gtcggtcttg
     5821 ctaagcgcta tccggggctg gacctgatgg ttacggagaa tggttctgcg tggaaggacg
     5881 aggtgactga ggattcctct gctccgggtg gaaggatcat ccatgatccg aagcgcgtag
     5941 cctatcttaa tcatcatatt cgtgcaatcg ccgatgccat cgaggccgga gttccggtgg
     6001 tcggttattt tgcatggtca ttgttggata atttcgaatg ggccttcgga tattcgaagc
     6061 gattcggcat tatcggtgtt gactatgaga cgcagaagcg tatctggaaa gattcggcat
     6121 accggtatcg tcagatcatc caggaaggaa tctga
//
