LOCUS       NZ_HG326223             4895 bp    DNA     linear   CON 20-NOV-2019
DEFINITION  Serratia marcescens subsp. marcescens Db11, complete genome.
ACCESSION   NZ_HG326223
VERSION     NZ_HG326223.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3138834
            Assembly: GCF_000513215.1
KEYWORDS    RefSeq; complete genome.
SOURCE      Serratia marcescens subsp. marcescens Db11
  ORGANISM  Serratia marcescens subsp. marcescens Db11
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Yersiniaceae; Serratia.
REFERENCE   1
  AUTHORS   Iguchi,A., Nagaya,Y., Pradel,E., Ooka,T., Ogura,Y., Katsura,K.,
            Kurokawa,K., Oshima,K., Hattori,M., Parkhill,J., Sebaihia,M.,
            Coulthurst,S.J., Gotoh,N., Thomson,N.R., Ewbank,J.J. and Hayashi,T.
  TITLE     Genome evolution and plasticity of Serratia marcescens, an important
            multidrug-resistant nosocomial pathogen
  JOURNAL   Genome Biol Evol 6 (8), 2096-2110 (2014)
   PUBMED   25070509
REFERENCE   2  (bases 1 to 4895)
  AUTHORS   Aslett,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JUN-2013) Pathogen Sequencing Unit, Wellcome Trust
            Sanger Institute, Wellcome Trust Genome Campus, Hinxton,
            Cambridgeshire, CB10 1SA, UNITED KINGDOM
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/20/2019 11:17:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
            Annotation Method                 :: Best-placed reference protein
            Annotation Software revision      :: 4.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
            Genes (total)                     :: 4,836
            CDSs (total)                      :: 4,710
            Genes (coding)                    :: 4,678
            CDSs (with protein)               :: 4,678
            Genes (RNA)                       :: 126
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 16
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 19 of 32
            Pseudo Genes (incomplete)         :: 14 of 32
            Pseudo Genes (internal stop)      :: 7 of 32
            Pseudo Genes (multiple problems)  :: 7 of 32
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence was derived from
            HG326223.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Annotation Pipeline (PGAP)
            set; GeneMarkS-2+
            repeat_region
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4895
                     /organism="Serratia marcescens subsp. marcescens Db11"
                     /mol_type="genomic DNA"
                     /strain="Db11"
                     /sub_species="marcescens"
                     /db_xref="taxon:273526"
                     /chromosome="I"
     gene            1..318
                     /locus_tag="SMDB11_RS00720"
                     /old_locus_tag="SMDB11_0151"
                     /db_xref="GeneID:23386559"
     CDS             1..318
                     /locus_tag="SMDB11_RS00720"
                     /old_locus_tag="SMDB11_0151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001005301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gnl|TC-DB|Q8L3C3|4.A.3.2.5"
                     /protein_id="WP_004932561.1"
                     /db_xref="GeneID:23386559"
                     /translation="MEKKKIYLFCSAGMSTSLLVSKMKAQAEKYEVPVIIAAYPEALAA
                     EKGVEADLILLGPQIAYTLPEVQKQLPNKPVEVIDPLLYGKVDGLGVLKAAVAAIKKAN
                     Q"
     gene            331..1692
                     /gene="chbC"
                     /locus_tag="SMDB11_RS00725"
                     /old_locus_tag="SMDB11_0152"
                     /db_xref="GeneID:23386560"
     CDS             331..1692
                     /gene="chbC"
                     /locus_tag="SMDB11_RS00725"
                     /old_locus_tag="SMDB11_0152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002347627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gnl|TC-DB|Q8L3C2|4.A.3.2.5"
                     /protein_id="WP_016929034.1"
                     /db_xref="GeneID:23386560"
                     /translation="MNTLIASLEKVILPFAVKIGKQPHVNAIKNGFIRLMPLTLTGAMF
                     VLINNVFLSFGEGSFFYSLGVRLDASTIETLNSLKSIGGSVYNGTLGIMSLMTPFFISM
                     ALAEERKVDPLASALLAVAAFMTVTPFNVGEAYAVGANWLGGANIISGMVIGLAVAEMF
                     AFIVRRNWVISLPDSVPASVSRSFSALIPGFIILSIMGLVAFALAHWGTNFHQIIMDGI
                     SAPLAKMGSVVGWVYVLFSSLLWFFGVHGSMALAALDSGIMTPFALENVELYNKYGSVE
                     AAVAAGKEFHMWAKPFVDSYIYLGGTGSTLGLIIAIFIASRREDYRQVAKLATPSGIFQ
                     INEPILFGLPVIMNPVMFIPFILVQPVLTIITSLAYYSGLIPPITNIAPWTMPVGLGAF
                     FNTNGSIMAMLLSLFNLAVATVIYLPFVAISNKAQSQIDAATESEEDIAKALKF"
     gene            1736..3121
                     /locus_tag="SMDB11_RS00730"
                     /old_locus_tag="SMDB11_0153"
                     /db_xref="GeneID:23386561"
     CDS             1736..3121
                     /locus_tag="SMDB11_RS00730"
                     /old_locus_tag="SMDB11_0153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001005303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GH1"
                     /protein_id="WP_025301629.1"
                     /db_xref="GeneID:23386561"
                     /translation="MEYQFADGFWWGSATSAPQSEGAAARDGKSRNIFDYWYEIAPERF
                     HDRVGPAEASTFYDHFRTDIGLLKTLGHNTFRTSISWSRLIPDGDGEVNPQAVAFYNAM
                     IDELLAQGITPFINLYHFDMPLCMQQRGGWENRAVVEAYARYADICFGLFGDRITHWFT
                     FNEPIVPVEAGYLNDLHYPCVVDFKRAITVAYHSVLAHAMAVQRFRARGLPGSIGIILN
                     LSPTYPRSDAPEDRQAAHDADLLLNRSFLDPVAKGRYPAALLHLLERHGLMPYCEPQDA
                     PLIEGGVVDILGVNYYQPRRVQAKAGRRAEGPIASPEDLFSYYAMPGRKINPHRGWEIY
                     EKGLYDILMDLKENYGNLPCYISENGMGVEGEEAFIGADGRVEDDYRIDFIREHLKWLH
                     RALAEGSQCKGYHLWTFIDCWSWLNAYKNRYGLVRLDRADQRRTIKKSGYWFAEAARRN
                     GFD"
     gene            3137..3985
                     /gene="chbR"
                     /locus_tag="SMDB11_RS00735"
                     /old_locus_tag="SMDB11_0154"
                     /db_xref="GeneID:23386562"
     CDS             3137..3985
                     /gene="chbR"
                     /locus_tag="SMDB11_RS00735"
                     /old_locus_tag="SMDB11_0154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015376697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="STP|AraC_binding,STP|HTH_18"
                     /protein_id="WP_025301630.1"
                     /db_xref="GeneID:23386562"
                     /translation="MSDNRISLSANDVKLIREQDFFNCKDFHLFIYNKVESATGLHQHD
                     YYEFTIVLSGKCYQEINGKRVLLERGNFVFIPIGSYHQSFYEFGATKIFNVAVSKAFFE
                     EHYLQQLPRCFVASQAYSLRSEFLAYIESVVSSPQFREDDFAEFLETLTFYVISRIRHY
                     KEDNDGGDDIPQWLKNTLAGMHDKAMFGERALANMVALSGKTQEYLTRAMRRYYQKTPM
                     QVINEIRINFAKTQLEVTNYSVSDIAFDSGYGDVSLFIKNFKRLTDVTPGNYRKKCYGP
                     L"
     gene            4134..4895
                     /gene="chbG"
                     /locus_tag="SMDB11_RS00740"
                     /old_locus_tag="SMDB11_0155"
                     /db_xref="GeneID:23386563"
     CDS             4134..4895
                     /gene="chbG"
                     /locus_tag="SMDB11_RS00740"
                     /old_locus_tag="SMDB11_0155"
                     /EC_number="3.5.1.105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004932547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chitin disaccharide deacetylase"
                     /protein_id="WP_025301631.1"
                     /db_xref="GeneID:23386563"
                     /translation="MEKLLIVNADDFGLSKGQNYGVVEAYQHGVVSSTTAMVNGGGAEH
                     AAALSRQYPGLPIGLHFVLTHGRPLGAMPSLVNEHGELGKWLWHRAEAGELQLDEIQEE
                     LQRQFTRFVTLFGRAPTHIDSHHHVHMQPQIYPLVEAFAQAQGLPLRLDREEAKRRGIA
                     LQTPYSTDAFDAGFYGETISEALFLQRLARADAQGAESLEMMCHPAFLDATILQSKYCH
                     PRLVELDVLTAPTLKAAIAERGFMLGSFQDL"
ORIGIN
        1 atggaaaaga aaaaaatcta tctgttttgt tctgccggta tgtccacttc cctgttggta
       61 tcgaaaatga aggcgcaggc cgaaaaatat gaagtgccgg tgatcatcgc cgcctatccg
      121 gaagcgctgg ccgcggagaa aggcgttgaa gcggatctga tcctgctggg gccgcagatc
      181 gcctacaccc tgccggaagt gcagaaacag ctgcccaata aacctgttga agtcatcgat
      241 ccgctgttgt acggcaaggt cgatgggctg ggcgtactga aggccgcggt ggccgccatc
      301 aagaaagcca atcaataaca ggaggccgcc gtgaataccc tcattgcctc gctcgagaag
      361 gttatcctgc ctttcgccgt aaaaatcggt aagcagcccc atgtcaacgc catcaagaac
      421 ggctttatcc gcctgatgcc gctgaccttg accggggcga tgttcgtgtt gatcaacaac
      481 gtgttcctga gcttcggcga gggatcgttt ttctattcgt tgggtgtaag gttggacgcc
      541 tccaccatcg agacgctgaa tagcctgaag agcattggtg gcagcgttta taacggtacg
      601 ctagggatca tgtccctgat gacgccgttc tttatcagca tggcgttggc cgaagagcgc
      661 aaggtcgatc cactggcctc ggcgctgctg gcggtggcgg ccttcatgac cgtcacgccg
      721 ttcaacgtcg gcgaggccta tgcggtgggc gccaattggc tgggcggcgc caacatcatt
      781 tccggtatgg tgatcgggct ggcggtggct gagatgtttg ctttcatcgt gcggcgcaac
      841 tgggtgatca gcttgccgga cagcgtgccg gcttcggtgt cgcgctcctt ctcagcgctg
      901 atccccggct ttatcatcct ctccatcatg gggctggtgg cgttcgcgct ggcgcactgg
      961 ggcaccaact tccaccagat catcatggac ggcatctcgg caccgctggc caagatgggc
     1021 agcgtggtgg gctgggtgta cgtgctgttc tcctcgctgc tgtggttctt cggggtgcac
     1081 ggctccatgg cgctggcggc gctggacagc ggcatcatga cgccgttcgc gctggaaaac
     1141 gtggagctgt acaacaaata cggttcggtc gaagcggcgg tggccgccgg caaagagttc
     1201 catatgtggg cgaaaccgtt cgtcgactcc tacatctacc ttggcggcac cggctcgacg
     1261 ctgggtctga ttatcgccat cttcatcgcc tcgcgccgcg aagattaccg ccaggtcgcc
     1321 aagctggcga cgccgtccgg catcttccag atcaacgaac cgattctgtt cggcctgccg
     1381 gtgatcatga acccggtgat gttcattccg ttcatcctgg tgcaaccggt actgaccatt
     1441 atcacctcgc tggcttatta ctccgggctg atcccgccga tcaccaacat tgcgccctgg
     1501 accatgccgg tcggcctggg ggcattcttc aacaccaacg gcagcatcat ggccatgttg
     1561 ctgagcctgt tcaacctggc ggtcgccacc gtgatttatc tgccgttcgt ggcgatctcc
     1621 aacaaggcgc agagccagat cgacgcggcg acggaaagcg aagaagacat cgccaaggcg
     1681 ctgaaattct aactgtggaa cggggcggcg cggccgcccc gcgagggaca cgagtatgga
     1741 atatcaattt gccgacgggt tctggtgggg cagcgccacc tccgcgccgc agtctgaagg
     1801 tgcggcagcg cgggacggca agagccgcaa tatcttcgat tattggtacg agatcgcgcc
     1861 cgagcgcttt cacgatcggg tggggccggc cgaggcctcg accttttacg accatttccg
     1921 taccgatatc gggctgctca aaacgctggg ccacaatacc ttcagaacct cgatttcgtg
     1981 gtcgcggctg atcccggacg gcgacggcga ggtgaacccg caggcggtgg ccttctataa
     2041 cgcgatgatc gacgagctgc tggcgcaggg catcaccccg tttatcaatc tctatcactt
     2101 cgatatgccg ctgtgcatgc agcagcgcgg cggctgggaa aaccgggcag tggtcgaagc
     2161 ctatgcgcgt tatgccgaca tctgcttcgg tctgtttggc gatcggatca cccactggtt
     2221 caccttcaac gagccgatag tgccggtgga ggccggttac ctgaatgacc tgcattaccc
     2281 ttgcgtggtg gatttcaaac gggcgatcac cgtggcgtat cacagcgtac tggcgcacgc
     2341 catggcggtg cagcgtttca gagcgcgcgg gctgccgggg agcatcggca tcattctgaa
     2401 tctgagcccg acctatccgc gctccgacgc gccggaggat cggcaggccg cacacgacgc
     2461 cgatctgttg ctcaaccgca gtttcctcga cccggtcgcc aaagggcgtt atccggcggc
     2521 gttgctgcac ttgctggagc gccatgggct gatgccctac tgcgagccgc aggatgcgcc
     2581 gctgatcgaa ggcggcgtgg tggatatcct cggcgtcaat tactaccagc cgcgcagggt
     2641 acaggcgaaa gcggggcgtc gtgccgaggg gccgatcgca tcgccggagg atttgttcag
     2701 ttactatgca atgccgggcc gcaaaatcaa tccgcaccgc ggctgggaga tctacgagaa
     2761 ggggctgtac gacatcctga tggatctgaa agagaactac ggcaatctgc cttgttatat
     2821 ttccgaaaac ggcatgggcg tcgagggcga agaggcgttt atcggcgccg atgggcgggt
     2881 ggaggacgat taccgcatcg actttattcg cgagcatctg aagtggctgc accgcgcgct
     2941 ggcggaaggc tcgcagtgca agggctatca tctgtggacc tttatcgact gctggtcctg
     3001 gctgaatgcc tacaagaatc gttatgggct ggtgcgcttg gatcgggcag atcagcgccg
     3061 caccatcaag aaaagcggct actggtttgc cgaggcggcc agacgcaacg ggtttgacta
     3121 acgggaggcc ggtgccgtgt ccgataaccg aatttcgctg agtgccaacg acgtgaagct
     3181 gattcgcgag caggatttct ttaactgcaa agattttcac ctgtttatct acaacaaggt
     3241 ggaaagcgcc accgggctgc atcagcacga ttattacgag ttcaccatcg tgctgagcgg
     3301 caaatgttat caggagatca acggcaagcg ggtgctgctg gaacgcggga atttcgtctt
     3361 tatccctatc ggctcctacc accagagctt ttacgagttc ggcgcgacga aaatcttcaa
     3421 cgtggcggtc agcaaagcgt tctttgaaga gcactatttg cagcagctgc cgcgttgctt
     3481 tgtcgcctcg caagcctaca gcctgagaag cgagttcttg gcctacatcg agtcggtggt
     3541 gagttcgcca cagtttcgcg aggatgactt cgccgaattt ctcgaaacgc tgactttcta
     3601 tgtgatcagc cgtattcgtc actataaaga agacaatgac ggcggcgatg atatcccgca
     3661 gtggctgaag aacaccctcg ccggcatgca tgacaaggcg atgttcggcg aaagggcgtt
     3721 ggcgaacatg gtggcgctgt cggggaaaac ccaggaatat ctgacccggg cgatgcggcg
     3781 ctactaccag aagacgccga tgcaggtgat caatgagatc cgcatcaact tcgccaagac
     3841 gcagctggag gtcaccaact attcggtttc cgatatcgcc tttgattctg gctatggcga
     3901 cgtcagtctg ttcattaaaa acttcaagcg gctcaccgac gtgaccccag gcaactaccg
     3961 aaaaaagtgt tacggccctc tttagggccg ctcccgatca gtattaacgc cgatatgccg
     4021 atgagcttta ggccgccggc cggttaatca ttcgattttt accttcgaga aggggaatgc
     4081 cgcgccggtc ggtcggcttt tccttgccga aaattcatcc tgcgggagcc attatggaaa
     4141 aactactgat cgtgaatgcc gacgacttcg gcctgagcaa aggacagaac tacggtgtcg
     4201 tcgaggcgta tcagcatggc gtcgtttcct ccaccacggc gatggtgaac ggcggcggcg
     4261 cggagcacgc ggcggcgctc agccggcaat atccgggatt gccgatcggg ctgcatttcg
     4321 ttttgaccca tggcaggccg ctgggcgcca tgccttcgct ggtcaatgag catggcgagc
     4381 tgggcaaatg gctgtggcac cgcgccgagg ccggcgagct gcagctggac gagattcagg
     4441 aggagctgca gcgccagttc acgcggtttg tgacgctgtt cggcagggcg ccaacgcata
     4501 tcgacagcca ccaccatgtg catatgcagc cgcagattta cccgctggtg gaggcgtttg
     4561 cacaggcaca gggtctgccg ctgcgcctcg atcgcgaaga ggcgaaacgg cgcggtattg
     4621 cgttgcagac gccctacagc accgacgcgt ttgacgcggg attctacggt gaaacgattt
     4681 ccgaagcctt gttcctgcag aggttggcac gcgccgacgc gcagggcgcc gagtcattgg
     4741 aaatgatgtg ccacccggcg ttcctcgatg cgacgatcct gcagagcaaa tactgccacc
     4801 cgcgcctcgt cgagctggat gtgttgaccg cgccgacgct gaaagcggcg atcgccgaac
     4861 gcggttttat gctgggctcc ttccaggatc tgtag
//
