LOCUS       NC_000964              10546 bp    DNA     linear   CON 18-SEP-2018
DEFINITION  Bacillus subtilis subsp. subtilis str. 168 complete genome.
ACCESSION   NC_000964
VERSION     NC_000964.3
DBLINK      BioProject: PRJNA76
            BioSample: SAMEA3138188
KEYWORDS    RefSeq; complete genome.
SOURCE      Bacillus subtilis subsp. subtilis str. 168
  ORGANISM  Bacillus subtilis subsp. subtilis str. 168
            Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.
REFERENCE   1
  AUTHORS   Borriss,R., Danchin,A., Harwood,C.R., Medigue,C., Rocha,E.P.C.,
            Sekowska,A. and Vallenet,D.
  TITLE     Bacillus subtilis, the model Gram-positive bacterium: 20 years of
            annotation refinement
  JOURNAL   Microb Biotechnol 11 (1), 3-17 (2018)
   PUBMED   29280348
REFERENCE   2  (bases 1 to 10546)
  AUTHORS   Belda,E., Sekowska,A., Le Fevre,F., Morgat,A., Mornico,D.,
            Ouzounis,C., Vallenet,D., Medigue,C. and Danchin,A.
  TITLE     An updated metabolic view of the Bacillus subtilis 168 genome
  JOURNAL   Microbiology (Reading, Engl.) 159 (Pt 4), 757-770 (2013)
   PUBMED   23429746
REFERENCE   3  (bases 1 to 10546)
  AUTHORS   Barbe,V., Cruveiller,S., Kunst,F., Lenoble,P., Meurice,G.,
            Sekowska,A., Vallenet,D., Wang,T., Moszer,I., Medigue,C. and
            Danchin,A.
  TITLE     From a consortium sequence to a unified sequence: the Bacillus
            subtilis 168 reference genome a decade later
  JOURNAL   Microbiology (Reading, Engl.) 155 (Pt 6), 1758-1775 (2009)
   PUBMED   19383706
REFERENCE   4  (bases 1 to 10546)
  AUTHORS   Kunst,F., Ogasawara,N., Moszer,I., Albertini,A.M., Alloni,G.,
            Azevedo,V., Bertero,M.G., Bessieres,P., Bolotin,A., Borchert,S.,
            Borriss,R., Boursier,L., Brans,A., Braun,M., Brignell,S.C., Bron,S.,
            Brouillet,S., Bruschi,C.V., Caldwell,B., Capuano,V., Carter,N.M.,
            Choi,S.K., Cordani,J.J., Connerton,I.F., Cummings,N.J., Daniel,R.A.,
            Denziot,F., Devine,K.M., Dusterhoft,A., Ehrlich,S.D., Emmerson,P.T.,
            Entian,K.D., Errington,J., Fabret,C., Ferrari,E., Foulger,D.,
            Fritz,C., Fujita,M., Fujita,Y., Fuma,S., Galizzi,A., Galleron,N.,
            Ghim,S.Y., Glaser,P., Goffeau,A., Golightly,E.J., Grandi,G.,
            Guiseppi,G., Guy,B.J., Haga,K., Haiech,J., Harwood,C.R., Henaut,A.,
            Hilbert,H., Holsappel,S., Hosono,S., Hullo,M.F., Itaya,M., Jones,L.,
            Joris,B., Karamata,D., Kasahara,Y., Klaerr-Blanchard,M., Klein,C.,
            Kobayashi,Y., Koetter,P., Koningstein,G., Krogh,S., Kumano,M.,
            Kurita,K., Lapidus,A., Lardinois,S., Lauber,J., Lazarevic,V.,
            Lee,S.M., Levine,A., Liu,H., Masuda,S., Mauel,C., Medigue,C.,
            Medina,N., Mellado,R.P., Mizuno,M., Moestl,D., Nakai,S., Noback,M.,
            Noone,D., O'Reilly,M., Ogawa,K., Ogiwara,A., Oudega,B., Park,S.H.,
            Parro,V., Pohl,T.M., Portelle,D., Porwollik,S., Prescott,A.M.,
            Presecan,E., Pujic,P., Purnelle,B., Rapoport,G., Rey,M.,
            Reynolds,S., Rieger,M., Rivolta,C., Rocha,E., Roche,B., Rose,M.,
            Sadaie,Y., Sato,T., Scanlan,E., Schleich,S., Schroeter,R.,
            Scoffone,F., Sekiguchi,J., Sekowska,A., Seror,S.J., Serror,P.,
            Shin,B.S., Soldo,B., Sorokin,A., Tacconi,E., Takagi,T.,
            Takahashi,H., Takemaru,K., Takeuchi,M., Tamakoshi,A., Tanaka,T.,
            Terpstra,P., Togoni,A., Tosato,V., Uchiyama,S., Vandebol,M.,
            Vannier,F., Vassarotti,A., Viari,A., Wambutt,R., Wedler,H.,
            Weitzenegger,T., Winters,P., Wipat,A., Yamamoto,H., Yamane,K.,
            Yasumoto,K., Yata,K., Yoshida,K., Yoshikawa,H.F., Zumstein,E.,
            Yoshikawa,H. and Danchin,A.
  TITLE     The complete genome sequence of the gram-positive bacterium Bacillus
            subtilis
  JOURNAL   Nature 390 (6657), 249-256 (1997)
   PUBMED   9384377
REFERENCE   5  (bases 1 to 10546)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (17-SEP-2018) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   6  (bases 1 to 10546)
  AUTHORS   Genoscope -,C.E.A.
  CONSRTM   AMAbiotics and Genoscope
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JAN-2013) A. Danchin, AMAbiotics, Bldg G1, 2, rue
            Gaston Cremieux, 91000 EVRY antoine.danchin@normalesup.org Bldg G1
            Genoscope / CEA (Commissariat a l'energie atomique et aux energies
            alternatives): BP 191 91006 EVRY cedex - FRANCE (E-mail:
            seqref@genoscope.cns.fr - Web: www.genoscope.cns.fr)
REFERENCE   7  (bases 1 to 10546)
  AUTHORS   Genoscope -,C.E.A.
  CONSRTM   Institut Pasteur and Genoscope
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JAN-2009) Genoscope - Centre National de Sequencage :
            BP 191 91006 EVRY cedex - FRANCE (E-mail : seqref@genoscope.cns.fr -
            Web : www.genoscope.cns.fr)
REFERENCE   8  (bases 1 to 10546)
  AUTHORS   Kunst,F., Ogasawara,N., Yoshikawa,H. and Danchin,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-NOV-1997) I. Moszer, A. Danchin, Genetique des Genomes
            Bacteriens, Institut Pasteur, 28 rue du Docteur Roux, 75724 Paris
            Cedex 15, FRANCE. E-mail: moszer@pasteur.fr,
            antoine.danchin@normalesup.org Phone: +33 (0)1 45 68 84 41, Fax: +33
            (0)1 45 68 89 48
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to AL009126.
            On Aug 12, 2009 this sequence version replaced NC_000964.2.
            On or before Mar 17, 2009 this sequence version replaced
            gi:32468687, gi:32468690, gi:32468695, gi:32468704, gi:32468715,
            gi:32468723, gi:32468738, gi:32468743, gi:32468745, gi:32468758,
            gi:32468767, gi:32468778, gi:32468787, gi:32468796, gi:32468802,
            gi:32468809, gi:32468813, gi:32468825, gi:32468830, gi:32468833,
            gi:32468840, gi:38680335.
            Annotation results relative to BLAST similarities, COG
            assignations, enzymatic function prediction (PRIAM software), TMHMM
            and SignalP predictions, and synteny conservation (Syntonizer
            software) are available in the MicroScope annotation platform
            http://www.genoscope.cns.fr/agc/microscope.
            The large cluster comprising the i, h and g rDNA regions could not
            be properly resolved, we therefore incorporated the original
            sequence of rRNAihg in the final assembly.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..10546
                     /organism="Bacillus subtilis subsp. subtilis str. 168"
                     /mol_type="genomic DNA"
                     /strain="168"
                     /sub_species="subtilis"
                     /type_material="type strain of Bacillus subtilis"
                     /db_xref="taxon:224308"
     gene            complement(1..1503)
                     /gene="abfA"
                     /locus_tag="BSU_28720"
                     /old_locus_tag="BSU28720"
     CDS             complement(1..1503)
                     /gene="abfA"
                     /locus_tag="BSU_28720"
                     /old_locus_tag="BSU28720"
                     /EC_number="3.2.1.55"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10417639, 11418559, 12777810, 14973026, 16233670,
                     18757805"
                     /note="Evidence 1a: Function from experimental evidences in
                     the studied strain; PubMedId: 10417639, 11418559, 12777810,
                     14973026, 16233670, 18757805; Product type e : enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="GH51"
                     /protein_id="NP_390750.2"
                     /db_xref="EnsemblGenomes-Gn:BSU28720"
                     /db_xref="EnsemblGenomes-Tr:CAB14832"
                     /db_xref="GOA:P94531"
                     /db_xref="InterPro:IPR010720"
                     /db_xref="InterPro:IPR017853"
                     /db_xref="SubtiList:BG11900"
                     /db_xref="UniProtKB/Swiss-Prot:P94531"
                     /translation="MKKARMIVDKEYKIGEVDKRIYGSFIEHMGRAVYEGIYEPDHPEA
                     DEDGFRKDVQSLIKELQVPIIRYPGGNFLSGYNWEDGVGPVENRPRRLDLAWQTTETNE
                     VGTNEFLSWAKKVNTEVNMAVNLGTRGIDAARNLVEYCNHPKGSYWSDLRRSHGYEQPY
                     GIKTWCLGNEMDGPWQIGHKTADEYGRLAAETAKVMKWVDPSIELVACGSSNSGMPTFI
                     DWEAKVLEHTYEHVDYISLHTYYGNRDNNLPNYLARSMDLDHFIKSVAATCDYVKAKTR
                     SKKTINLSLDEWNVWYHSNEADKKVEPWITARPILEDIYNFEDALLVGSLLITMLQHAD
                     RVKIACLAQLVNVIAPIMTEKGGEAWRQPIFYPYMHASVYGRGESLKPLISSPKYDCSD
                     FTDVPYVDAAVVYSEEEETLTIFAVNKAEDQMETEISLRGFESYQIAEHIVLEHQDIKA
                     TNQHNRKNVVPHSNGSSSVSENGLTAHFTPLSWNVIRLKKQS"
     gene            complement(1522..2367)
                     /gene="araQ"
                     /locus_tag="BSU_28730"
                     /old_locus_tag="BSU28730"
     CDS             complement(1522..2367)
                     /gene="araQ"
                     /locus_tag="BSU_28730"
                     /old_locus_tag="BSU28730"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:9084180, 10417639, 11418559, 14973026, 15849754,
                     16850406, 22720735"
                     /note="Evidence 1a: Function from experimental evidences in
                     the studied strain; PubMedId: 9084180, 10417639, 11418559,
                     14973026, 15849754, 16850406, 22720735; Product type t:
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="gnl|TC-DB|P94530|3.A.1.1.34"
                     /protein_id="NP_390751.2"
                     /db_xref="EnsemblGenomes-Gn:BSU28730"
                     /db_xref="EnsemblGenomes-Tr:CAB14833"
                     /db_xref="GOA:P94530"
                     /db_xref="InterPro:IPR000515"
                     /db_xref="InterPro:IPR035906"
                     /db_xref="SubtiList:BG11912"
                     /db_xref="UniProtKB/Swiss-Prot:P94530"
                     /translation="MLRHSPQFSVYRIALTLFFMMLSLLYLFPIFCLLLGSLKPSSELL
                     RVGLNLDIDPKVMSFDNYTFLFNGGSIYFKWFFNSLVLGLFTTVLTLFFSSMIGYGLAV
                     YDFKGRNIIFVLVLIIMMVPLEVMMLPLFKLTVGLHLIDSYTGVILPFIVSPVAVFFFR
                     QYALGLPRDLLDSARMDGCTEFGIFFRIMAPLMKPAFGAMIILQSLNSWNNFLWPLIVL
                     RSKEMFTLPIGLSSLLSPYGNNYDMLISGSVFAILPVIIIFLFFQKYFISGLTVGGVKG
                     "
     gene            complement(2368..3309)
                     /gene="araP"
                     /locus_tag="BSU_28740"
                     /old_locus_tag="BSU28740"
     CDS             complement(2368..3309)
                     /gene="araP"
                     /locus_tag="BSU_28740"
                     /old_locus_tag="BSU28740"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences in
                     other organisms; PubMedId: 9084180, 10417639, 11418559,
                     14973026, 15849754, 16850406, 22720735; Product type t:
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="gnl|TC-DB|P94529|3.A.1.1.34"
                     /protein_id="NP_390752.1"
                     /db_xref="EnsemblGenomes-Gn:BSU28740"
                     /db_xref="EnsemblGenomes-Tr:CAB14834"
                     /db_xref="GOA:P94529"
                     /db_xref="InterPro:IPR000515"
                     /db_xref="InterPro:IPR035277"
                     /db_xref="InterPro:IPR035906"
                     /db_xref="SubtiList:BG11911"
                     /db_xref="UniProtKB/Swiss-Prot:P94529"
                     /translation="MKPVKTGTVHPVPSAAKQSGWRDLFYSKKAAPYLFTAPFVLSFLV
                     FFLYPIISVFIMSFQRILPGEVSFVGLSNYTALNNPTFYTALWNTLEYTFWTLIVLIPV
                     PLLLAIFLNSKLVKFRNIFKSALFIPALTSTIVAGIIFRLIFGEMETSLANSILLKLGF
                     SPQNWMNNEHTGMFLMVLLASWRWMGINILYFLAGLQNVPKELYEAADIDGANTMKKFL
                     HITLPFLKPVTVYVLTISIIGGFRMFEESYVLWQNNSPGNIGLTLVGYLYQQGLAYNEM
                     GYGAAIGIVLLIVILVVSLISLKLSGSFKGEG"
     gene            complement(3345..4646)
                     /gene="araN"
                     /locus_tag="BSU_28750"
                     /old_locus_tag="BSU28750"
     CDS             complement(3345..4646)
                     /gene="araN"
                     /locus_tag="BSU_28750"
                     /old_locus_tag="BSU28750"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences in
                     other organisms; PubMedId: 9084180, 10417639, 11418559,
                     14973026, 15849754, 16850406, 22720735; Product type lp:
                     lipoprotein"
                     /codon_start=1
                     /transl_table=11
                     /product="gnl|TC-DB|P94528|3.A.1.1.34"
                     /protein_id="NP_390753.2"
                     /db_xref="EnsemblGenomes-Gn:BSU28750"
                     /db_xref="EnsemblGenomes-Tr:CAB14835"
                     /db_xref="GOA:P94528"
                     /db_xref="InterPro:IPR006059"
                     /db_xref="SubtiList:BG11910"
                     /db_xref="UniProtKB/Swiss-Prot:P94528"
                     /translation="MKKMTVCFLVLMMLLTLVIAGCSAEKSSGKSGETELTFWTFNGLH
                     EQFYVEMVKEWNKKYPDRKIKLNTVVYPYGQMHDNLSISLIAGEGVPDIADVELARFSN
                     FLKGSDIPLADLTPLIEKDRDKFVEARLTLYSKNGKLYGLDTHVGTTVMFYNMDVMKKA
                     GVNPDDIKTWDDYHKAGQKVRKVTGKPMGTVETNDSATFLSMISQQNSGYFDKNGKLIL
                     NNDTNVKTLQYLKDMINDKTMIPAPGGGHHSEEYYGFMNQGGAASVLMPIWYMGRFIDY
                     MPDLKGKIAIRPLPAWKEGGDRSAGLGGTATVVPKQSKHVELAKEFLAFAKGSEEGNKK
                     LWSVLGFDPLRWDVWSSKELKEKNKYTDYFQNGTGIFSVLLDIKDEINPIYLHEDFAKA
                     SDLVNRSVLFDALKSQQKTPKQALDRAAGELKQK"
     gene            complement(4677..5861)
                     /gene="egsA"
                     /locus_tag="BSU_28760"
                     /old_locus_tag="BSU28760"
     CDS             complement(4677..5861)
                     /gene="egsA"
                     /locus_tag="BSU_28760"
                     /old_locus_tag="BSU28760"
                     /EC_number="1.1.1.261"
                     /function="16.8: Protect"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:9084180, 9973362, 10417639, 11418559, 14973026,
                     18558723, 22720735, 27774041"
                     /note="Evidence 1a: Function from experimental evidences in
                     the studied strain; PubMedId: 9084180, 9973362, 10417639,
                     11418559, 14973026, 18558723, 22720735, 27774041; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol-1-phosphate dehydrogenase [NAD+]
                     (catabolic)"
                     /protein_id="NP_390754.1"
                     /db_xref="EnsemblGenomes-Gn:BSU28760"
                     /db_xref="EnsemblGenomes-Tr:CAB14836"
                     /db_xref="GOA:P94527"
                     /db_xref="InterPro:IPR023003"
                     /db_xref="InterPro:IPR032837"
                     /db_xref="SubtiList:BG11909"
                     /db_xref="UniProtKB/Swiss-Prot:P94527"
                     /translation="MNRIAADVQRAFENAGEKTLPIKVEEIVLGKQAADSLLDYVKRKN
                     NQHIVLVCDANTHRIAGIDLENRLNQEGFQAECLIIPENEAGDVTADERSLIHVLIHTK
                     QPTDVMIAVGSGTIHDIVRFAAFQRDLPFISYPTAPSVDGFTSAGAPIILYGTKTTIQT
                     KAPSALFADLDLLKAAPQSMVAAGFGDMLGKITSLADWEISRHLAGEPYSPAGAKIVQE
                     ALAACIEHTEDIAMKTETGIRVLMESLLVSGLVMLALDHSRPASGGEHHISHWIEMELM
                     EKKRPQILHGAKVGCAAVLLTDTYRKLAQDDGLNEFSPSRREAIQSAYQTLPRGEVLAD
                     WLRSAGGPAYFDEIGVGQDSVKNAFRHAHTLRDRCTGLRIINENKTLINHGLYE"
     gene            complement(5858..6676)
                     /gene="araL"
                     /locus_tag="BSU_28770"
                     /old_locus_tag="BSU28770"
     CDS             complement(5858..6676)
                     /gene="araL"
                     /locus_tag="BSU_28770"
                     /old_locus_tag="BSU28770"
                     /EC_number="3.1.3.23"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10417639, 11418559, 14973026, 21575135, 22720735,
                     25848029"
                     /note="Evidence 1a: Function from experimental evidences in
                     the studied strain; PubMedId: 10417639, 11418559, 14973026,
                     21575135, 22720735, 25848029; Product type e : enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="glycolytic and pentose phosphate intermediates
                     phosphatase"
                     /protein_id="NP_390755.1"
                     /db_xref="EnsemblGenomes-Gn:BSU28770"
                     /db_xref="EnsemblGenomes-Tr:CAB14837"
                     /db_xref="GOA:P94526"
                     /db_xref="InterPro:IPR006357"
                     /db_xref="InterPro:IPR023214"
                     /db_xref="InterPro:IPR036412"
                     /db_xref="SubtiList:BG11908"
                     /db_xref="UniProtKB/Swiss-Prot:P94526"
                     /translation="MRIMASHDTPVSPAGILIDLDGTVFRGNELIEGAREAIKTLRRMG
                     KKIVFLSNRGNISRAMCRKKLLGAGIETDVNDIVLSSSVTAAFLKKHYRFSKVWVLGEQ
                     GLVDELRLAGVQNASEPKEADWLVISLHETLTYDDLNQAFQAAAGGARIIATNKDRSFP
                     NEDGNAIDVAGMIGAIETSAQAKTELVVGKPSWLMAEAACTAMGLSAHECMIIGDSIES
                     DIAMGKLYGMKSALVLTGSAKQGEQRLYTPDYVLDSIKDVTKLAEEGILI"
     gene            complement(6654..7343)
                     /gene="araD"
                     /locus_tag="BSU_28780"
                     /old_locus_tag="BSU28780"
     CDS             complement(6654..7343)
                     /gene="araD"
                     /locus_tag="BSU_28780"
                     /old_locus_tag="BSU28780"
                     /EC_number="5.1.3.4"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences in
                     other organisms; PubMedId: 10417639, 11418559, 11732895,
                     14973026, 22720735; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="L-ribulose-5-phosphate 4-epimerase"
                     /protein_id="NP_390756.1"
                     /db_xref="EnsemblGenomes-Gn:BSU28780"
                     /db_xref="EnsemblGenomes-Tr:CAB14838"
                     /db_xref="GOA:P94525"
                     /db_xref="InterPro:IPR001303"
                     /db_xref="InterPro:IPR004661"
                     /db_xref="InterPro:IPR036409"
                     /db_xref="SubtiList:BG11906"
                     /db_xref="UniProtKB/Swiss-Prot:P94525"
                     /translation="MLETLKKEVLAANLKLQEHQLVTFTWGNVSGIDREKERIVIKPSG
                     VEYSDLTADDLVVLNLDGEVVEGSLKPSSDTPTHVYLYKAFPNIGGIVHTHSQWATSWA
                     QSGRDIPPLGTTHADYFDSAIPCTREMYDEEIIHDYELNTGKVIAETFQHHNYEQVPGV
                     LVNNHGPFCWGTDALNAIHNAVVLETVAEMAYHSIMLNKDVTPINTVLHEKHFYRKHGA
                     NAYYGQS"
     gene            complement(7360..9042)
                     /gene="araB"
                     /locus_tag="BSU_28790"
                     /old_locus_tag="BSU28790"
     CDS             complement(7360..9042)
                     /gene="araB"
                     /locus_tag="BSU_28790"
                     /old_locus_tag="BSU28790"
                     /EC_number="2.7.1.16"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences in
                     other organisms; PubMedId: 173711, 4910050, 10417639,
                     11418559, 14973026, 22720735; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="L-ribulokinase"
                     /protein_id="NP_390757.1"
                     /db_xref="EnsemblGenomes-Gn:BSU28790"
                     /db_xref="EnsemblGenomes-Tr:CAB14839"
                     /db_xref="GOA:P94524"
                     /db_xref="InterPro:IPR000577"
                     /db_xref="InterPro:IPR005929"
                     /db_xref="InterPro:IPR018483"
                     /db_xref="InterPro:IPR018484"
                     /db_xref="InterPro:IPR018485"
                     /db_xref="SubtiList:BG11905"
                     /db_xref="UniProtKB/Swiss-Prot:P94524"
                     /translation="MAYTIGVDFGTLSGRAVLVHVQTGEELAAAVKEYRHAVIDTVLPK
                     TGQKLPRDWALQHPADYLEVLETTIPSLLEQTGVDPKDIIGIGIDFTACTILPIDSSGQ
                     PLCMLPEYEEEPHSYVKLWKHHAAQKHADRLNQIAEEEGEAFLQRYGGKISSEWMIPKV
                     MQIAEEAPHIYEAADRIIEAADWIVYQLCGSLKRSNCTAGYKAMWSEKAGYPSDDFFEK
                     LNPSMKTITKDKLSGSIHSVGEKAGSLTEKMAKLTGLLPGTAVAVANVDAHVSVPAVGI
                     TEPGKMLMIMGTSTCHVLLGEEVHIVPGMCGVVDNGILPGYAGYEAGQSCVGDHFDWFV
                     KTCVPPAYQEEAKEKNIGVHELLSEKANHQAPGESGLLALDWWNGNRSTLVDADLTGML
                     LGMTLLTKPEEIYRALVEATAYGTRMIIETFKESGVPIEELFAAGGIAEKNPFVMQIYA
                     DVTNMDIKISGSPQAPALGSAIFGALAAGKEKGGYDDIKKAAANMGKLKDITYTPNAEN
                     AAVYEKLYAEYKELVHYFGKENHVMKRLKTIKNLQFSSAAKKN"
     gene            complement(9056..10546)
                     /gene="araA"
                     /locus_tag="BSU_28800"
                     /old_locus_tag="BSU28800"
     CDS             complement(9056..10546)
                     /gene="araA"
                     /locus_tag="BSU_28800"
                     /old_locus_tag="BSU28800"
                     /EC_number="5.3.1.4"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10417639, 10669396, 11418559, 14973026, 18263741"
                     /note="Evidence 1a: Function from experimental evidences in
                     the studied strain; PubMedId: 10417639, 10669396, 11418559,
                     14973026, 18263741; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="L-arabinose isomerase"
                     /protein_id="NP_390758.2"
                     /db_xref="EnsemblGenomes-Gn:BSU28800"
                     /db_xref="EnsemblGenomes-Tr:CAB14840"
                     /db_xref="GOA:P94523"
                     /db_xref="InterPro:IPR003762"
                     /db_xref="InterPro:IPR004216"
                     /db_xref="InterPro:IPR009015"
                     /db_xref="InterPro:IPR024664"
                     /db_xref="SubtiList:BG11904"
                     /db_xref="UniProtKB/Swiss-Prot:P94523"
                     /translation="MLQTKDYEFWFVTGSQHLYGEETLELVDQHAKSICEGLSGISSRY
                     KITHKPVVTSPETIRELLREAEYSETCAGIITWMHTFSPAKMWIEGLSSYQKPLMHLHT
                     QYNRDIPWGTIDMDFMNSNQSAHGDREYGYINSRMGLSRKVIAGYWDDEEVKKEMSQWM
                     DTAAALNESRHIKVARFGDNMRHVAVTDGDKVGAHIQFGWQVDGYGIGDLVEVMDRITD
                     DEVDTLYAEYDRLYVISEETKRDEAKVASIKEQAKIELGLTAFLEQGGYTAFTTSFEVL
                     HGMKQLPGLAVQRLMEKGYGFAGEGDWKTAALVRMMKIMAKGKRTSFMEDYTYHFEPGN
                     EMILGSHMLEVCPTVALDQPKIEVHSLSIGGKEDPARLVFNGISGSAIQASIVDIGGRF
                     RLVLNEVNGQEIEKDMPNLPVARVLWKPEPSLKTAAEAWILAGGAHHTCLSYELTAEQM
                     LDWAEMAGIESVLISRDTTIHKLKHELKWNEALYRLQK"
ORIGIN
        1 ttatgactgt tttttcaggc ggatcacatt ccaggaaagc ggcgtgaaat gagcagttaa
       61 gccgttttcg ctgacagacg atgatccgtt ggaatgcgga acgacatttt ttctgttatg
      121 ctggtttgtt gctttgatat cctgatgctc aagtacgatg tgctctgcga tttggtagga
      181 ttcaaagcct ctgagcgaaa tctccgtctc catctgatcc tcagccttgt ttaccgcaaa
      241 aatagtgagt gtttcttcct cttcagagta cacaacagca gcatcaacat atggcacatc
      301 agtgaaatca gaacaatcgt acttaggaga agaaataagc ggtttcagtg actcgcccct
      361 tccgtaaaca gaagcatgca tgtatggata gaaaatcggc tgtctccatg cttctccgcc
      421 tttttccgtc atgatcggcg cgatgacatt aacaagctgt gcaagacacg caattttcac
      481 acggtctgcg tgctgcagca tcgtaatgag cagagagccg actaataagg catcttcaaa
      541 attgtaaata tcctctaaaa tcggacgcgc agtgatccac ggctcgactt ttttatcagc
      601 ctcatttgag tggtaccaga cgttccattc atccagagag agattgatag ttttcttgct
      661 gcgtgttttt gcttttacat agtcacaggt cgcagcgact gatttgataa aatgatccaa
      721 atccatagaa cgtgccaagt agtttggcag attgttatcc cggtttccgt agtaagtgtg
      781 aagagagata tagtcgacat gctcatacgt atgctcaagc accttcgctt cccaatcgat
      841 aaaggtcggc ataccgctgt ttgagctgcc gcaggcaacg agttcaattg atgggtcaac
      901 ccacttcatg acctttgctg tctctgcggc aagccgtccg tattcatcag ctgttttgtg
      961 gccgatctgc catggtccat ccatttcgtt tcctaagcac catgttttga tgccatacgg
     1021 ctgttcatag ccatgcgatc ttcttaaatc actccagtaa gagcctttcg gatggttgca
     1081 atattcaacg agattacggg cggcatctat gcctcttgtg ccaaggttga cggccatatt
     1141 gacctcagtg ttcacctttt ttgcccaaga taaaaattca tttgttccca cttcattggt
     1201 ttctgtcgtt tgccatgcca agtcaagccg tctcgggcgg ttttcgactg gtccgacacc
     1261 gtcctcccag ttgtatccgg ataaaaagtt tccgcccgga tagcggatga tgggaacctg
     1321 taattctttg atcagcgact ggacatcttt tctaaatcca tcttcatccg cttcagggtg
     1381 atcaggctcg tatatgcctt catataccgc acgacccata tgttcgataa acgagccata
     1441 aatccgttta tctacttcac cgattttata ttctttgtct acaatcattc gcgctttttt
     1501 catcacacgt ttcctccttc attaaccttt gactccccct accgtcaggc cggagataaa
     1561 gtacttttgg aaaaacaaga aaatgataat caccggcaaa atcgcaaata ctgagccgga
     1621 tataagcatg tcgtaattat ttccataagg gctcagcaag ctggacagcc ctattggaag
     1681 cgtaaacatt tctttcgacc gaagcacaat cagcggccac aagaagttgt tccagctgtt
     1741 taaggactga aggataatca tcgcaccgaa agccggtttc atcagcggtg ccataatcct
     1801 gaaaaagatg ccgaattccg tacagccgtc catccttgca gagtccagca gatctcttgg
     1861 aaggccaaga gcatattgcc tgaaaaagaa aacagcaaca ggtgaaacga taaacggcaa
     1921 tatgacaccc gtatatgaat cgatcaagtg cagtccgaca gtaagtttaa acagaggaag
     1981 catcatcact tccagcggaa ccatcataat aatcagcaca agaacaaaga tgatatttct
     2041 gcccttaaaa tcataaaccg caagcccgta cccgatcatc gaagaaaaaa acagagtgag
     2101 cacagtcgta aaaagtccga gtacaagact gttaaaaaac catttgaaat aaatgctgcc
     2161 gccattaaac agaaatgtgt agttatcaaa actcatcact tttggatcaa tatcaagatt
     2221 cagccccaca cgcaaaagct cagatgacgg ctttaatgat cctaaaagca aacagaaaat
     2281 cggaaaaaga tacaataggc tcagcatcat aaaaaacagg gtcagcgcaa ttctataaac
     2341 gctaaactga ggactgtgcc gcaacattta tccctccccc ttaaacgagc ctgacagctt
     2401 taatgaaatc aggctgacaa caaggatcac aatcaaaagc acaatgccga tggccgctcc
     2461 gtatcccatt tcattgtagg caagtccctg ctgatacaaa tatccgacaa gcgtcagacc
     2521 aatattaccc ggggaattat tctgccaaag gacgtagctt tcctcaaaca tcctgaagcc
     2581 gccgatgatg ctgatggtca gcacatatac ggttacaggc ttgagaaacg gcagcgtgat
     2641 gtgcagaaat tttttcattg tattcgcgcc gtctatatca gcggcttcgt acagctcttt
     2701 cggcacattt tgcaaacctg ctaaaaagta aaggatgttg attcccatcc atctccatga
     2761 agcaagcagc accatcaaaa acatgccggt atgttcattg ttcatccagt tctgaggtga
     2821 aaagccgagt ttaagtagga tggaattggc cagagacgtt tccatttctc cgaagatcag
     2881 ccgaaaaatg atccccgcga caatggttga ggtcaatgcc gggataaata atgctgattt
     2941 aaatatattt ctaaatttga ccagctttga attcaggaat atggccagaa gcaatggaac
     3001 aggaatcagc acgatcagcg tccaaaaggt gtattccagc gtattccaaa gggcggtata
     3061 gaacgtcggg ttgtttagcg ctgtataatt agacaatccg acaaaggaca cctctcccgg
     3121 caaaattctt tggaagctca tgatgaagac actaatgatg gggtatagaa aaaatacgag
     3181 aaaggataaa acgaatggcg ctgtaaacag atagggcgcc gctttttttg aataaaacag
     3241 atctcgccag cctgattgtt tcgcagctga aggaacggga tgaaccgttc ccgttttcac
     3301 aggtttcatg agaacctccc cgctttcact ttttgaatgg gattctattt ctgtttcagt
     3361 tcacctgccg ctctgtccaa ggcttgttta ggcgtttttt gctgagattt aagcgcgtcg
     3421 aacaatacgc ttctgttgac aaggtctgaa gccttggcaa aatcctcatg taaataaatt
     3481 ggattgattt catccttgat atcgagcagc acagaaaaaa tgcctgttcc gttttggaag
     3541 taatccgtgt atttgttttt ctctttcaat tccttggagc tccaaacatc ccagcgaagc
     3601 gggtcaaagc cgagtacgct ccagagtttt ttatttcctt cttcagagcc cttcgcaaag
     3661 gccaaaaact cttttgctaa ctcaacatgc ttggattgct tcggtacaac agttgccgta
     3721 ccgcccaaac ctgccgagcg gtcgcccccc tctttccatg ccgggagcgg tctgatggca
     3781 atcttccctt tcagatcagg catataatcg ataaatcttc ccatatacca aatcggcatg
     3841 agaactgaag cagctcctcc ttggttcata aagccgtagt attcttcact gtgatgcccg
     3901 ccgcccggcg caggaatcat cgttttatca ttgatcatgt cttttaaata ttgaagtgtt
     3961 tttacgttgg tgtcattatt gaggatcagc ttgccgtttt tatcaaaata gcctgagttt
     4021 tgctgtgaaa tcatagataa gaacgttgcg gaatcatttg tttccaccgt tcccatcggc
     4081 ttcccggtca ctttgcgcac tttctgtccg gctttatggt aatcatccca tgttttaata
     4141 tcgtcaggat tgacgccggc ttttttcatc acatccatgt tataaaacat gaccgttgtc
     4201 cctacatgtg tatcgagtcc gtaaagcttt ccgtttttgc tgtacaatgt cagccgcgcc
     4261 tcaacgaatt tatcgcgatc cttttcaatc agcggagtca agtcggcaag cggtatgtca
     4321 gagcccttca aaaagtttga aaaacgggcc aattcgacat ctgcaatatc aggaacgcct
     4381 tctcccgcta ttagggagat agataagtta tcgtgcattt gtccatatgg ataaacgacc
     4441 gtattcagct taattttgcg gtcaggatat tttttgttcc attccttcac catttccaca
     4501 tagaactgct catgaagccc gttaaatgtc caaaaggtca gctcagtttc acccgatttg
     4561 ccggatgatt tttctgctga acacccggca atgactaatg tcagcaacat catgagcaca
     4621 agaaaacaga cagtcatttt tttcatctgc gttacccctt ccattcgagg tgcgggctat
     4681 tcatatagac catggttgat cagcgttttg ttttcattga tgattcttaa tccggtgcat
     4741 cggtctctta aggtgtgcgc gtgtctgaag gcatttttga cggaatcctg cccgacaccg
     4801 atttcgtcaa aatacgcagg gcctccggct gatctcagcc aatcagccag cacttctcct
     4861 ctcgggagtg tttgataagc cgattggatg gcttcccggc ggcttggtga aaattcgttc
     4921 agcccgtcat cctgagcgag ctttctgtat gtgtcagtta ataaaacagc ggcacagccc
     4981 acctttgccc catgaagaat ctgaggccgt tttttctcca ttaactccat ttcaatccaa
     5041 tgtgaaatat gatgctcgcc gcctgatgcc ggtcgggaat gatctaatgc cagcatgaca
     5101 agccccgata caagtaaaga ctccatcaaa acccgtatgc cagtttccgt tttcatcgca
     5161 atgtcttctg tgtgttcaat gcaggcagca agcgcctcct gaacgatctt agctcctgca
     5221 ggcgaataag gctcaccggc aagatgccgg gatatttccc aatctgctaa agacgtgatt
     5281 ttaccgagca tgtcaccaaa gccagccgcc accattgact gcggtgccgc ttttaataga
     5341 tccagatcag cgaacagcgc agatggggcc ttcgtttgaa tggttgtttt cgtgccgtat
     5401 aaaataatcg gcgcaccggc tgatgtaaaa ccgtctacag atggagcagt cggataagaa
     5461 ataaacggca aatctctttg aaacgccgca aagcggacga tatcatgaat cgtgcccgaa
     5521 ccgactgcga tcatgacatc cgttggttgt ttcgtatgga tcagcacatg aatgagcgat
     5581 cgttcatcag ctgtcacatc tccggcttca ttttctggaa tgatcaggca ctcggcctga
     5641 aatccttctt gattcagtcg gttttctaaa tcaattcctg caatgcggtg tgtattcgcg
     5701 tcgcagacaa ggacaatatg ttgattgttt tttcgtttta cataatccaa aagcgaatca
     5761 gctgcttgct taccgagaac aatttcttca acttttatag gcaacgtctt ttctccggcg
     5821 ttttcaaaag cacgctgaac gtcagctgcg atacgattca tatcagaatc ccctcctcag
     5881 ccaatttggt tacatcctta atagaatcca gcacataatc cggcgtgtac aaacgctgtt
     5941 caccctgttt cgcagaacca gttagcacta aggcgctttt catgccataa agcttcccca
     6001 tcgcaatgtc agattcaatg ctgtctccta taatcatgca ttcatgtgcg gacagcccca
     6061 ttgctgtaca ggcagcctcc gccatcagcc atgacggttt tccgacaaca agttcagtct
     6121 tcgcttgtgc agaagtctca attgccccga tcattccggc cacatcaatg gcatttccgt
     6181 cttcgttcgg aaaagagcgg tctttgtttg tagcgataat acgagcgccg ccggcagccg
     6241 cttgaaaggc ttgatttaaa tcgtcgtacg tgagcgtttc atgaagggag atcacgagcc
     6301 aatccgcttc cttcggttcg ctcgcgttct gcacaccggc cagcctcagc tcgtcaacca
     6361 agccttgctc cccaagcacc catacctttg aaaaacgata atgttttttc agaaaagccg
     6421 ctgtcacgct tgatgacaga acaatgtcgt ttacgtccgt ttcaatcccc gcgccaagaa
     6481 gtttttttct gcacatggca cgggagatat tcccccggtt gcttaaaaag acgattttct
     6541 ttcccattct cctaagcgtt ttgatcgctt ctcttgctcc ttcgatcaac tcatttcctc
     6601 tgaatacagt accgtccaag tcaatcagaa tgccagccgg tgacacaggc gtatcatgac
     6661 tggccataat acgcatttgc tccgtgtttt cgataaaaat gcttttcatg caggactgta
     6721 ttgattgggg ttacatcctt gttcagcata atggagtgat aggccatttc ggcaaccgtt
     6781 tctaatacaa ctgcgttatg aatggcattt aaggcgtcag tgccccagca gaacggtccg
     6841 tgattattca cgagcacacc cggcacctgt tcgtaattat gatgctgaaa ggtttccgct
     6901 atgacttttc ctgtattcag ttcgtagtca tgaatgattt cttcatcgta catttctcga
     6961 gtacatggaa tcgcactgtc aaaataatca gcatgggtcg tgcctaacgg agggatgtct
     7021 ctgcccgatt gcgcccagct tgtcgcccat tgagaatggg tatggacaat tcccccgata
     7081 ttcggaaagg ctttatatag ataaacatgg gtaggtgtat ctgaagaagg tttaagcgag
     7141 ccttcgacga cctctccatc aaggttcaaa acaaccaagt catcggctgt caggtcgctg
     7201 tattcgactc cgctaggttt gatgacaatt ctttcttttt cacggtcaat gccgctgaca
     7261 tttccccacg taaaggttac cagctgatgc tcttgaagct tcaggttggc agccagcact
     7321 tcttttttta atgtttcaag catgctccat caccctttat caattctttt tggcggcaga
     7381 tgaaaattga agatttttga tcgttttcag acgcttcatg acatggtttt cttttccgaa
     7441 ataatgaacc agctctttat attcagcgta caatttttca taaaccgcgg cgttttcggc
     7501 atttggcgta taagttatat ctttcagttt tcccatgttc gccgctgcct ttttgatatc
     7561 atcgtagccg cctttttctt tgcctgctgc aagcgcgccg aaaatggcag atcctaaggc
     7621 tggggcttgc ggtgaaccag agattttaat gtccatgttt gtcacatccg cataaatctg
     7681 catgacaaac gggtttttct cagctattcc gccggctgcg aacagttcct caatcggaac
     7741 accgctttct ttgaatgttt cgataatcat ccgggttccg taagctgtcg cttcaactaa
     7801 cgctctataa atctcttcag gcttcgtcag cagtgtcatg ccaagcagca tccctgttaa
     7861 atctgcatca acaagagttg aacggtttcc attccaccaa tctaaagcaa gcaagccgct
     7921 ttcaccaggc gcttgatggt ttgctttctc actcagcagc tcatgaacgc caatgttttt
     7981 ttcctttgct tcctcttgat aagctggcgg gacacatgtt ttcacaaacc agtcaaaatg
     8041 atcgccgaca caggactgcc cggcttcata tcccgcatag cccgggagaa ttccgttgtc
     8101 cacaacgccg cacattcctg gaacgatatg cacctcttca ccaagtagaa catggcacgt
     8161 cgaggttccc ataatcatca gcattttccc tggctctgta atgccgaccg ccggtaccga
     8221 aacatgagcg tccacattgg caaccgcaac agccgttccc gggagaagcc ctgtcagctt
     8281 tgccattttt tcagtcagac tgccggcttt ttctcctact gaatgaatag aacctgacaa
     8341 tttgtccttt gtaatcgttt tcattgaagg atttaatttc tcaaagaaat catctgacgg
     8401 ataccccgct ttttcactcc acatcgcttt ataccctgcg gtacaattgc ttcgcttgag
     8461 cgagccgcac agctggtaca cgatccagtc cgcagcctcg atgatccggt cagccgcttc
     8521 ataaatgtga ggcgcttcct cggcaatttg catgaccttt ggaatcatcc attctgatga
     8581 aatttttcct ccgtaccgct gtaaaaaagc ctctccttct tcttccgcga tttgattgag
     8641 ccgatcagca tgtttttggg ccgcatgatg cttccagagc ttcacatagc tgtgcggctc
     8701 ctcttcatat tcaggcagca tgcataacgg ctgcccgctg ctgtcaatag gaaggatcgt
     8761 acatgccgtg aaatcaattc caatcccgat aatgtctttc gggtcaacgc ccgtctgttc
     8821 gagtaaagac ggaatggttg tttccaagac ttcgaggtaa tcagcagggt gctgcagcgc
     8881 ccagtcacgc ggcagctttt gacccgtttt tggaaggacg gtatcaatga cagcatgcct
     8941 gtattctttt acagcagccg caagttcctc ccctgtttgg acatgaacga gcactgctct
     9001 tcctgataaa gttccaaaat caacccctat tgtgtaagcc atgtgacatc cccctctact
     9061 tttgaagccg gtaaagcgcc tcgttccatt ttaactcgtg tttcagttta tgaattgtcg
     9121 tatcacggga aatgagaaca ctttcgattc ccgccatttc cgcccaatca agcatttgct
     9181 ccgctgtcag ttcataagac aggcaggtat ggtgtgcacc gccggctaaa atccatgcct
     9241 ccgctgctgt tttcaatgac ggctccggct tccagagaac acgggcaacc ggtaaattcg
     9301 gcatgtcttt ttcaatttcc tggccgttga cttcattcag cacaaggcgg aaacgcccgc
     9361 caatatcaac aatgctagct tgaatggcag aaccgctgat gccgttaaat accaaacgcg
     9421 cagggtcctc tttgccgcca atcgaaagcg aatgaacctc gattttcggc tgatccaaag
     9481 cgacagtcgg acacacttca agcatgtgag agcccagaat catttcattt cccggttcaa
     9541 aatggtacgt gtaatcttcc atgaaggaag ttctttttcc tttagccatg attttcatca
     9601 tccgtacaag ggccgctgtc ttccaatctc cttcaccggc aaacccatag cctttctcca
     9661 tcaggcgctg aacggcaagt cccggcagct gtttcattcc gtgcagcact tcaaacgatg
     9721 tcgtaaacgc tgtgtatccg ccttgctcaa gaaaagcggt taatccaagt tcaattttcg
     9781 cctgttcttt aatggacgct acctttgctt cgtcacgttt tgtttcctca ctgatcacat
     9841 atagtctgtc atactcggca taaagcgtgt caacctcgtc gtccgtaatg cgatccatca
     9901 cttcaacgag atccccgatg ccatatccgt caacctgcca gccaaattga atatgcgctc
     9961 ccaccttgtc tccgtccgtt accgcgacat gacgcatgtt atctccaaat ctggcaacct
    10021 taatatgtct gctttcattt aatgcagccg ccgtatccat ccactgggac atttcttttt
    10081 tcacttcttc atcatcccaa tagccggcaa tgacttttcg gctaagcccc attctcgagt
    10141 tgatgtaacc gtactctcga tcgccatgcg cggattggtt gctgttcata aaatccatgt
    10201 caatcgtacc ccacgggata tcgcgattat attgggtatg caaatgcata agcggttttt
    10261 gataagagga aaggccttct atccacattt ttgcagggga aaatgtgtgc atccatgtaa
    10321 tgatgccagc acatgtctca ctgtactccg cttctcttaa cagctctcta atggtttccg
    10381 gtgaagtgac gacgggctta tgagtgattt tatatctgga agaaatcccg ctgagcccct
    10441 cacaaatgct tttagcatgc tgatctacga gttccagcgt ctcttccccg tataggtgct
    10501 ggcttcctgt cacaaaccag aattcataat cctttgtctg aagcat
//
