LOCUS       CP002038                4630 bp    DNA     linear   BCT 10-FEB-2014
DEFINITION  Dickeya dadantii 3937, complete genome.
ACCESSION   CP002038
VERSION     CP002038.1
DBLINK      BioProject: PRJNA30
            BioSample: SAMN02603422
KEYWORDS    .
SOURCE      Dickeya dadantii 3937
  ORGANISM  Dickeya dadantii 3937
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Pectobacteriaceae; Dickeya.
REFERENCE   1  (bases 1 to 4630)
  AUTHORS   Glasner,J.D., Yang,C.H., Reverchon,S., Hugouvieux-Cotte-Pattat,N.,
            Condemine,G., Bohin,J.P., Van Gijsegem,F., Yang,S., Franza,T.,
            Expert,D., Plunkett,G. III, San Francisco,M.J., Charkowski,A.O.,
            Py,B., Bell,K., Rauscher,L., Rodriguez-Palenzuela,P., Toussaint,A.,
            Holeva,M.C., He,S.Y., Douet,V., Boccara,M., Blanco,C., Toth,I.,
            Anderson,B.D., Biehl,B.S., Mau,B., Flynn,S.M., Barras,F.,
            Lindeberg,M., Birch,P.R., Tsuyumu,S., Shi,X., Hibbing,M., Yap,M.N.,
            Carpentier,M., Dassa,E., Umehara,M., Kim,J.F., Rusch,M., Soni,P.,
            Mayhew,G.F., Fouts,D.E., Gill,S.R., Blattner,F.R., Keen,N.T. and
            Perna,N.T.
  TITLE     Genome Sequence of the Plant-Pathogenic Bacterium Dickeya dadantii
            3937
  JOURNAL   J. Bacteriol. 193 (8), 2076-2077 (2011)
   PUBMED   21217001
REFERENCE   2  (bases 1 to 4630)
  CONSRTM   International Erwinia Consortium
  TITLE     Direct Submission
  JOURNAL   Submitted (14-MAY-2010) Department of Genetics, University of
            Wisconsin, 425 Henry Mall, Madison, WI 53706, USA
COMMENT     Source DNA and bacteria strain is available from Jeremy Glasner,
            jglasner@wisc.edu.
FEATURES             Location/Qualifiers
     source          1..4630
                     /organism="Dickeya dadantii 3937"
                     /mol_type="genomic DNA"
                     /strain="3937"
                     /db_xref="taxon:198628"
     gene            1..1047
                     /gene="rafR"
                     /locus_tag="Dda3937_03030"
     CDS             1..1047
                     /gene="rafR"
                     /locus_tag="Dda3937_03030"
                     /function="RafR controls the expression of genes involved
                     in raffinose degradation"
                     /function="1.2.4 metabolism; macromolecule degradation;
                     polysaccharides"
                     /function="3.1.2 regulation; type of regulation;
                     transcriptional level"
                     /function="2.2.2 information transfer; RNA related;
                     transcription related"
                     /note="RafR belongs to the LacI family of transcriptional
                     regulators; GO_component: GO:0005737 - cytoplasm;
                     GO_component: GO:0005622 - intracellular; GO_function:
                     GO:0003700 - transcription factor activity; GO_process:
                     GO:0000272 - polysaccharide catabolic process; GO_process:
                     GO:0006355 - regulation of transcription, DNA-dependent;
                     GO_process: GO:0006350 - transcription"
                     /codon_start=1
                     /transl_table=11
                     /product="DBD-Pfam|LacI,DBD-SUPERFAMILY|0036955"
                     /protein_id="ADM97864.1"
                     /db_xref="ASAP:ABF-0019140"
                     /translation="MSLKQIAKTLGLSVTTVSRALNGYDDVAAETRLRVEDEARRLGYR
                     PNTFARRLKMGRIDAVGLVFPLQPAPLSNTTFMEMVAEISHELSKQEIDLLLIADEEQA
                     DHPAFLRMIESRRVDALIVAHTLQQDSRLQYLQSIGFPFLALGRSDLPMPYAWFDFDNQ
                     AGAALATRHLIALGHRHIAFLGEHHPQSFIAQRRAGYLDALAAAGIARRDELLRQIAPS
                     RREGYQTTLQWLALPQPPTAIVVDGSTQGEGAALALRDSGRLQGEQAVSLIVYDGLPAD
                     SLLEIPVTAITQATRVQVGRQIADMVFRLLAGDAPASLQALWQPQLRAGQTDNPPPAQA
                     GALLPPTS"
     gene            1167..3296
                     /gene="rafA"
                     /locus_tag="Dda3937_03029"
     CDS             1167..3296
                     /gene="rafA"
                     /locus_tag="Dda3937_03029"
                     /EC_number="3.2.1.22"
                     /function="1.2.4 metabolism; macromolecule degradation;
                     polysaccharides"
                     /note="GO_component: GO:0005737 - cytoplasm; GO_function:
                     GO:0004557 - alpha-galactosidase activity; GO_function:
                     GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl
                     compounds; GO_function: GO:0003824 - catalytic activity;
                     GO_process: GO:0000272 - polysaccharide catabolic process;
                     GO_process: GO:0005975 - carbohydrate metabolic process;
                     GO_process: GO:0008152 - metabolic process"
                     /codon_start=1
                     /transl_table=11
                     /product="GH36"
                     /protein_id="ADM97865.1"
                     /db_xref="ASAP:ABF-0019139"
                     /translation="METTLIRLASPATDVIVRCRPAAEILYWGPHLAAFSPQDADSLSR
                     PVANGRLDVDVPVTLAAETGRGLFGSPGIEGHRNGLDAFAVLTTVAVRQPDPQQLVIEA
                     EDRQAGLRLTTELRLHADSGVLQLRHCLTNLHPGDWQVQRLAVTLPLPESAAEVMAFHG
                     RWVREFQPHRTLLSHGSLVQENRRGRTSHEYFPAMISGEPGFAEQHGRVWGAHLGWSGN
                     HRLRTEVKTDGRRLLQAEALYLPGEIALAQGESLTTPWLYAACSEQGLNGMSQQFHRFL
                     RQEIIRFPRAKARPVHLNTWEGIYFKHDPDYIMQMASQAAALGVERFIIDDGWFRGRDH
                     DRAALGDWYVDPRKYPQGLMPVINHVRELGMEFGIWVEPEMINPDSDLYRAHPDWLLAL
                     PGYDQPTGRYQYVLDLSNPEVFDYLLARLSWLLGGHPIDYVKWDMNRELVQPAHQGRAA
                     ADRQTQAFYRLLDVLGERFPQVEFESCASGGGRIDYEVLRRCHRFWASDNNDALERQTI
                     QRGMSYFFPPEVMGAHIGHHRCHATGRQHSIAFRGLTALFGHMGIELDPVRADAQEQAG
                     FRHYVALHRRYRALLHTGCLWRVDMPDATTQVQGVISADRGQALFLVAQLAMPDYALAG
                     VLRFPGLDPQARYRLTVVDHPDLKPVVDGGSTMRQLPAWMAAPAEYSSEWLMKAGLRLP
                     ILNPETALLLALERL"
     gene            3350..4630
                     /gene="rafB"
                     /locus_tag="Dda3937_03028"
     CDS             3350..4630
                     /gene="rafB"
                     /locus_tag="Dda3937_03028"
                     /function="4.2.A.1 transport; Electrochemical potential
                     driven transporters; Porters (Uni-, Sym- and Antiporters);
                     The Major Facilitator Superfamily (MFS)"
                     /function="4.S.117 transport; substrate; melibiose"
                     /function="1.1.1 metabolism; carbon utilization; carbon
                     compounds"
                     /function="6.1 cell structure; membrane"
                     /function="7.3 location of gene products; inner membrane"
                     /function="4.S.99 transport; substrate; lactose"
                     /note="GO_component: GO:0019866 - organelle inner membrane;
                     GO_component: GO:0005886 - plasma membrane; GO_component:
                     GO:0016020 - membrane; GO_component: GO:0016021 - integral
                     to membrane; GO_function: GO:0005403 - (DEPRECATED)
                     hydrogen:sugar symporter activity; GO_function: GO:0005215
                     - transporter activity; GO_process: GO:0016052 -
                     carbohydrate catabolic process; GO_process: GO:0006810 -
                     transport"
                     /codon_start=1
                     /transl_table=11
                     /product="gnl|TC-DB|P96517|2.A.1.5.4"
                     /protein_id="ADM97866.1"
                     /db_xref="ASAP:ABF-0019138"
                     /translation="MDISSATPRTSTHRYNRNFWIFGLFFFLYFFIMATCFPFLPVWLA
                     EVIGLNKTQTGVVFSAISLFAILFQPLMGVVSDRLGLKKHLLWVIAVLLFLFAPFFLYV
                     FAPLLRVNSLLGAMAGGVYIGLVFSAGSGAVEAYIERVSRQSGFEYGKARMFGCLGWGL
                     CASTAGILFNVNPALVFWMGSGAAVILLVLLLIARPEPHPTAQVMDALGANQPQVTLKM
                     ATRVFGDRKLWMFVLYVVGVACVYDVFDQQFANFFKSFFATPQQGNQVFGFATTLGELA
                     NAVIMFCSPWIINRIGAKNTLLVAGTIMTVRIVGSAFATTVVEVVALKMLHALEVPFLL
                     VGAFKYITTTFDTRLSATIYLIGFQFAKQSAAIFLSAMAGNLYDRIGFQHTYLILGAIA
                     LTVTLISAFTLSGSRANAQPVYRTTLS"
ORIGIN
        1 atgtcactga aacagattgc aaaaacgctg gggctgtcgg ttactaccgt tagccgggcg
       61 ctgaacggct acgatgacgt ggccgccgag acgcgcctgc gggtggaaga cgaggcgcga
      121 cgccttggct atcgtcctaa cacctttgcc cgccgcctga aaatgggccg tattgacgcg
      181 gttgggctgg tgttcccgtt gcagcctgcg ccgctcagca atactacctt catggaaatg
      241 gtggcggaaa tcagccatga attgtcgaag caggagatcg atctgctgct gatcgccgac
      301 gaggagcagg ctgaccaccc ggcgtttttg cgcatgattg aaagccgccg ggtggatgcg
      361 ctgattgtcg ctcacaccct gcaacaggac tctcgcctgc aatatctgca atcgatcggt
      421 tttccgtttc tggcgctcgg gcgcagcgac ctgccgatgc cctatgcctg gtttgatttc
      481 gacaatcagg ccggcgccgc gctcgccacc cgtcacctga tcgcgctcgg ccaccgtcac
      541 atcgccttcc ttggcgaaca ccatcctcaa tcatttatcg cccagcgtcg cgccggttat
      601 ctggatgcac tggccgccgc cggtatcgcc cggcgtgatg agctgttgcg ccagatagcg
      661 ccatcgcgcc gggaaggata ccaaaccact ttgcagtggc tggcactgcc gcagccgccc
      721 accgccatcg tcgtcgacgg cagtacgcag ggggaagggg cggcgctggc gttgcgcgac
      781 agcgggcgcc tgcagggcga gcaggccgta tcgctgatcg tctatgacgg cttgccggcc
      841 gactcgctac tggagatacc ggtcaccgcc attacgcagg ctacgcgcgt gcaggtgggg
      901 cggcagatcg ccgatatggt gtttcgcctg ctggcgggag acgcgccggc gtcgttgcag
      961 gcgttgtggc agccgcaact gcgtgccgga cagaccgata acccgccgcc agcacaggcc
     1021 ggagcactgc tcccgccgac atcgtgatgc tatcgctctc gccgttcgtt ttttaacccg
     1081 atcacaaaac cgaaacgttt cggttctaat ccgaaacgtt tcggaataca aaataacctc
     1141 atcacccatc attcaggagg atgaggatgg aaacgacgct gattcgtctc gccagtccgg
     1201 cgacggatgt cattgtgcgc tgccggccgg cagcggaaat actttactgg gggccgcatc
     1261 tggcggcatt ttcgccgcag gatgcggaca gcctgtcgcg gccggtggcg aacggccggc
     1321 tggatgtgga cgtgccggtg acgctggcgg cggaaaccgg acgcgggctg ttcggctcgc
     1381 cgggcattga ggggcatcgc aacggtctcg atgcctttgc ggtgctgacc accgtcgcgg
     1441 tgcgtcagcc ggacccgcag caactggtca tcgaggcgga agaccgtcag gctggcctgc
     1501 gcctgaccac cgagttacgg ctgcatgccg acagcggggt gctgcaactg cgccactgcc
     1561 tgaccaatct gcatccgggc gactggcagg tgcagcggct ggcggtcacg ttaccgttac
     1621 cggagtcggc ggcggaggtg atggcgtttc acggccgctg ggtgcgggaa tttcagccgc
     1681 atcgcacgct gctgtcgcac ggcagtctgg tgcaggaaaa ccgccgcggg cgcacgtcgc
     1741 acgaatattt tccggcgatg atcagcgggg aaccgggatt tgccgaacag cacggtcggg
     1801 tgtggggcgc gcacctcggc tggagcggca accaccggtt gcgcacggag gtgaagaccg
     1861 acggccggcg gctgttgcag gcggaggcgc tttacctgcc cggcgaaatc gcgctggcgc
     1921 agggggagtc gctgaccacg ccgtggctgt acgccgcctg ttctgaacag gggctgaacg
     1981 gcatgagcca gcagtttcac cggtttctgc gtcaggagat tatccgtttt ccgcgtgcca
     2041 aggcgcgccc ggttcacctc aatacctggg aaggcatcta ctttaagcat gacccggact
     2101 acatcatgca gatggcgagc caggcggcgg cgctgggcgt cgagcgcttt attatcgacg
     2161 atggctggtt tcgcgggcgc gaccatgacc gcgccgcgct gggcgactgg tatgtggacc
     2221 cgcgcaagta cccgcagggg ctgatgccgg tgataaacca tgtgcgggag ctgggcatgg
     2281 aattcggcat ttgggtagaa ccggaaatga tcaacccgga ctccgacctc tatcgcgcgc
     2341 acccggactg gctgctggcg ctgcccggct acgaccagcc gaccggccgc taccagtacg
     2401 tgctcgacct gtctaacccc gaggtgttcg attatctact ggcgcgcctg agctggctgt
     2461 tgggcgggca ccccatcgat tacgtgaaat gggacatgaa ccgggagctg gtgcagccgg
     2521 cccatcaggg gcgggcggcg gctgaccgcc agacgcaggc gttttaccgc ctgctcgacg
     2581 tgctgggcga gcgctttccg caggtggagt ttgagtcctg cgcatccggt ggcgggcgca
     2641 ttgattatga agtgttgcgg cgttgccacc gtttctgggc gtctgacaac aacgacgcgc
     2701 tggagcggca gacgattcag cgcggcatga gctacttctt cccgcccgaa gtgatggggg
     2761 cgcacatcgg ccatcaccgc tgtcacgcca ccggacgcca gcacagtatt gcctttcgcg
     2821 ggttgacggc gctgttcggt catatgggta tcgagctgga tccggtgcgc gccgatgcgc
     2881 aggaacaggc cggttttcgc cattatgtgg cgttgcatcg gcgttaccgc gcgctgttgc
     2941 acaccggttg cctgtggcgg gtcgacatgc cggacgccac cacccaggtg cagggggtga
     3001 tcagtgccga tcgggggcag gcgctgtttc tggtagcgca gttggcgatg ccggattacg
     3061 cgctggccgg ggtgctgcga ttccccggtc tggacccgca ggcccgttac cggttgaccg
     3121 tggtggatca tcccgacctg aagccggttg tcgacggcgg cagcaccatg cgccagctgc
     3181 cggcatggat ggcggcaccg gctgaataca gcagcgaatg gctgatgaaa gccgggctgc
     3241 gtctgcccat tctcaacccg gaaacggcgc tgttgctggc gttagaacgt ctgtaatacg
     3301 gtgggagagg gcgacctctc cccagtctgg atcctctgag gataataata tggacatcag
     3361 ctctgcgacc cctcgcacta gtactcaccg atacaaccgt aatttctgga ttttcggcct
     3421 gttctttttt ctgtatttct tcatcatggc gacctgtttt ccgtttctgc cggtctggct
     3481 ggcggaggtg atcggcctga acaaaaccca gaccggggtg gtgttttccg ctatttcgct
     3541 gttcgccatt ctgtttcagc cgctgatggg ggtcgtgtcg gaccggctgg ggttgaaaaa
     3601 acacctgctg tgggtgatcg ccgtcttgct gtttttgttc gcgccgttct ttctgtatgt
     3661 gtttgcgccg ctgctccggg tcaatagcct gctgggggcg atggcgggcg gcgtgtatat
     3721 cgggctggtg ttttccgccg gttccggcgc ggtggaagcc tatattgaac gcgtcagccg
     3781 ccagagcggt ttcgagtatg gcaaggcgcg aatgttcggc tgccttggct gggggctatg
     3841 cgcgtcaacg gcgggtatcc tgtttaacgt caatccggcg ctggtgttct ggatggggtc
     3901 cggcgcggcg gtgatcctgc tggtgttgct gctgatagcc cgtcccgagc ctcacccgac
     3961 ggcgcaggtg atggacgcgc tgggcgccaa tcagccgcag gtgacgttga aaatggcgac
     4021 ccgggtattc ggcgatcgca agctgtggat gtttgtgttg tacgtggtgg gcgtggcctg
     4081 cgtgtatgac gtgttcgacc agcagttcgc caacttcttc aaatcgtttt tcgccacgcc
     4141 gcagcagggc aatcaggtgt ttggctttgc caccacgctg ggtgaactgg ctaatgccgt
     4201 catcatgttc tgttcgccgt ggatcattaa tcgcatcggc gccaaaaaca ccttactggt
     4261 ggcggggacg atcatgacgg tgcggattgt cgggtcggcg tttgccacca cggtggtgga
     4321 agtggtggcg ctgaaaatgt tgcatgcgct ggaggtgccg ttcctgctgg tgggcgcgtt
     4381 caagtacatc accactactt ttgacacccg gctgtccgcc accatctacc tgattggctt
     4441 tcagttcgcc aaacagtcgg cggcaatctt tctgtcggcg atggcgggga atctgtatga
     4501 ccgcatcggt tttcagcaca cctatctgat cctcggtgcc atcgccctga cggtgacgct
     4561 gatctccgcg tttacgctat ccggctcgcg cgccaacgca cagccggtat atcgcactac
     4621 gctgtcctga
//
