LOCUS       FP476056                3686 bp    DNA     linear   BCT 27-MAR-2015
DEFINITION  Zobellia galactanivorans strain DsiJT chromosome, complete genome.
ACCESSION   FP476056
VERSION     FP476056.1
DBLINK      BioProject: PRJEB8976
            BioSample: SAMEA3315864
KEYWORDS    .
SOURCE      Zobellia galactanivorans
  ORGANISM  Zobellia galactanivorans
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae; Zobellia.
REFERENCE   1
  AUTHORS   Thomas,F., Barbeyron,T., Tonon,T., Genicot,S., Czjzek,M. and
            Michel,G.
  TITLE     Characterization of the first alginolytic operons in a marine
            bacterium: from their emergence in marine Flavobacteriia to their
            independent transfers to marine Proteobacteria and human gut
            Bacteroides
  JOURNAL   Environ. Microbiol. 14 (9), 2379-2394 (2012)
   PUBMED   22513138
REFERENCE   2  (bases 1 to 3686)
  AUTHORS   Genoscope -,C.E.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JUL-2009) Genoscope - Centre National de Sequencage :
            BP 191 91006 EVRY cedex - FRANCE (E-mail : seqref@genoscope.cns.fr -
            Web : www.genoscope.cns.fr)
FEATURES             Location/Qualifiers
     source          1..3686
                     /organism="Zobellia galactanivorans"
                     /mol_type="genomic DNA"
                     /strain="DsiJT"
                     /db_xref="taxon:63186"
     gene            complement(1..864)
                     /locus_tag="ZOBELLIA_234"
     CDS             complement(1..864)
                     /locus_tag="ZOBELLIA_234"
                     /EC_number="3.1.-.-"
                     /note="The alpha/beta hydrolase-fold proteins catalyse a
                     wide range of enzymatic reactions. They are characterized
                     by a catalytic triad, usually an serine, an aspartic acid,
                     and an histidine; The core of enzyme is an alpha/beta-sheet
                     (rather than a barrel), containing 8 strands connected by
                     helices; Contains a N-terminal haloalkane dehalogenase
                     domain; Belongs to alpha/beta hydrolase superfamily,
                     dmpD/todF/xylF esterase family; Localized in the cytoplasm;
                     Function unclear"
                     /codon_start=1
                     /transl_table=11
                     /product="Alpha/beta hydrolase-fold protein"
                     /protein_id="CAZ94307.1"
                     /db_xref="GOA:G0L919"
                     /db_xref="InterPro:IPR000073"
                     /db_xref="InterPro:IPR000639"
                     /db_xref="InterPro:IPR029058"
                     /db_xref="UniProtKB/TrEMBL:G0L919"
                     /translation="MQNTKYRKTVVEGVNIAYREAGNPDNPTLVLLHGFPSSSHQYRKV
                     LNQLSDDYHLIAPDYPGFGNSDFPSPDAYDYTFDHIALTINGFLEQKGIHSYALMIQDY
                     GAPVGFRIATAHPERVTAIINQNGNAYEAGLGKAWASTRALWENRNEETEKALSAVFSL
                     EGLEWQYTHGTRNPENVNPDTWHLDYLRLSRPNAHKVNLDLFYDYRNNVKLYPEWQKYL
                     RDNQPPLLIVWGKNDKFFPESGAEAFKKDVKNLHYHIFDTGHFALEEDGDEIIEKIRGF
                     MKEVMV"
     gene            complement(1052..1615)
                     /locus_tag="ZOBELLIA_235"
     CDS             complement(1052..1615)
                     /locus_tag="ZOBELLIA_235"
                     /function="Transcription regulator activity"
                     /note="Several of these transcriptional regulators are
                     repressors of genes and operons for membrane transport and
                     cell envelope permeability; The helix-turn-helix motif is
                     located in the initial third of the protein. The C-terminal
                     part contains regions that can be involved in binding of
                     inducers, which can be drugs, and oligomerization;
                     Localized in the cytoplasm; Family membership"
                     /codon_start=1
                     /transl_table=11
                     /product="STP|TetR_N"
                     /protein_id="CAZ94308.1"
                     /db_xref="GOA:G0L920"
                     /db_xref="InterPro:IPR001647"
                     /db_xref="InterPro:IPR009057"
                     /db_xref="InterPro:IPR015893"
                     /db_xref="UniProtKB/TrEMBL:G0L920"
                     /translation="MRPQKILDKDLMVALAKVFRAKGYEGTSLAELAEVTGLKKASLYH
                     RFPKGKEAMGSSVFNYIGDWVQANVFAALADESNTPEVRLKKGLKHIGTFYDGGRESCI
                     FRAFSMETGLHLFEKNIESGMNEWISAFTKIGVALKQSPESAKANAVQTLIEIQGSLIV
                     TKGLNDTDVFEKTLQNIENRYLNK"
     gene            2046..3686
                     /gene="cgkA"
                     /locus_tag="ZOBELLIA_236"
     CDS             2046..3686
                     /gene="cgkA"
                     /locus_tag="ZOBELLIA_236"
                     /EC_number="3.2.1.83"
                     /function="Hydrolyses the beta-1,4 linkages in
                     kappa-carrageenan"
                     /note="Kappa-carrageenase Hydrolyses the
                     1,4-beta-D-galactosidic linkages in kappa-carrageenan
                     giving the tetramer as the predominant product; Modular
                     enzyme containing a N-terminal catalytic domain belonging
                     to the family 16 of the glycoside hydrolases, a central
                     Carbohydrate Binding Module of the family CBM16 and a
                     C-terminal domain of unknown function; Signal peptide
                     cleaved between the residues 29 and 30; Localized in the
                     periplasmic space and possibly secreted in the outside
                     medium; High confidence in function and specificity"
                     /codon_start=1
                     /transl_table=11
                     /product="CBM16|GH16"
                     /protein_id="CAZ94309.1"
                     /db_xref="GOA:G0L921"
                     /db_xref="InterPro:IPR000757"
                     /db_xref="InterPro:IPR003305"
                     /db_xref="InterPro:IPR013320"
                     /db_xref="InterPro:IPR026444"
                     /db_xref="UniProtKB/TrEMBL:G0L921"
                     /translation="MKKPNFYGKMGRTALSSLFYLFFLGLVYGQQPTKTSNPNDQWTIK
                     WSASDEFNKNDPDWAKWIKTGNLPNTSAWKWNNQKNVKISNGIAELTMRHNANNTPDGG
                     TYFTSGIFKSYQKFTYGYFEAKIQGADIGEGVCPSFWLYSDFDYSVANGETVYSEIDVV
                     ELQQFDWYEGHQDDIYDMDLNLHAVVKENGQGVWKRPKMYPQEQLNKWRAPWDPSKDFH
                     IYGCEVNQNEIIWYVDGVEVARKPNKYWHRPMNVTLSLGLRKPFVKFFDNKNNAINPET
                     DAKAREKLSDIPTSMYVDYVRVWEKSAGNTTNPPTSEVGTLKNKGFETGDLTHWDASTG
                     TISAVSNNTKTGQYAGSVNNASIAQIVTLKANTSYKVSAFGKASSPGTSAYLGISKASN
                     NELISNFEFKTTSYSKGEIEIRTGNVQESYRIWYWSSGQAYCDDFNLVEINSGASQLNE
                     NETETALEKGIHIYPNPYKNGPLTIDFGKPFSGEVQITGLNGRTFLRRNVVDQTSVQLL
                     ESKSKFKSGLYIVKISGPDGEVSKKILVE"
ORIGIN
        1 tcacaccata acttccttca taaaacccct gatcttttca atgatttcgt ctccgtcttc
       61 ctcaagggca aagtgtcccg tatcgaagat atggtaatgt aaattcttga catctttttt
      121 aaacgcctcc gccccgcttt ctgggaaaaa tttatcgttt ttaccccaaa cgatcaaaag
      181 gggtggttga ttatccctta gatatttctg ccattcagga tataatttta cattgtttcg
      241 ataatcatag aacaggtcaa gatttacctt atgtgcattg ggccgtgata gcctcaaata
      301 atctaaatgc caggtatcgg gattaacatt ttccggattt ctggtaccat gggtatattg
      361 ccactcaagg ccttccaagg aaaatacggc ggacaaggcc ttttccgttt cctcgttcct
      421 gttttcccac aatgcccttg tactggccca ggccttgccc aacccagctt cataggcgtt
      481 gccattttga ttaataatag ccgtaaccct ttccggatgg gccgtggcta tcctaaaacc
      541 taccggtgca ccgtaatctt gtatcataag ggcgtaagaa tgtattccct tttgctctag
      601 aaacccgtta atggtcaagg ctatatgatc aaaagtatag tcatatgcgt cgggcgaagg
      661 aaaatcacta ttaccaaatc ccggataatc gggcgcaatt aaatggtagt cgtccgataa
      721 ttggttcaag acctttctat attgatggga ggatgaagga aatccgtgta acaataccag
      781 ggtcggatta tcaggatttc cggcttcgcg ataagctatg ttaacaccct cgaccactgt
      841 ttttctgtat ttcgtgtttt gcattttaga tatgttttat gtttatataa ttgaatgggc
      901 caccccccgt ttttgtcatt tgacatcagg aaaagcatat aaatcggaac ggttttcttc
      961 atcgcggctt acgtttttac cgtctttcct tttactataa cagaaatacg aattttaccg
     1021 aacgttcggt aattaaatag ggtaaaaatt tttatttgtt caaataccta ttctctatgt
     1081 tttgtaaggt tttttcaaag acatcggtat cgtttaatcc tttggttacg ataaggctcc
     1141 cctgaatttc gatcaatgtt tgtaccgcat tcgctttggc cgattcggga ctctgtttta
     1201 aagcaactcc gattttcgta aaggcactta tccactcatt cattccggac tcaatattct
     1261 tttcgaacaa atgcaacccg gtttccattg aaaaggccct aaaaatacag ctttcccgcc
     1321 ccccatcgta gaaggttcca atatgcttca accccttttt cagccttact tcaggggtat
     1381 tactttcatc ggctagggcc gcaaatacat tcgcttggac ccagtcacct atataattga
     1441 atacggaact acccatggct tccttcccct ttgggaacct atggtacaga cttgcctttt
     1501 ttaaaccggt tacttcagct aattccgcca agctggttcc ttcataacct ttggcccgaa
     1561 acaccttggc caaggccacc attaaatctt tatccaatat tttttgcggt ctcatgggac
     1621 aaatctataa caaacattca attttaccaa acgttcggta ataaatctag tcaaaaacgg
     1681 ggtccgattc aattttagaa gaaaggtaaa gcccccaaaa gagcggttta cttgaagata
     1741 tgatttataa aacacaataa gtgacaaagg aagatcatgg ctataattag ttgaaaaaac
     1801 agggcttacc atgacatgga gctttattga aaacagatgt ccaacaagaa taaaggaggg
     1861 ccgttcgacc gcgaacgttt aaataaaaac atattccata tcaaaattta attaaggttc
     1921 tttcctacag tatttataag aaattactaa aattagttag gataatacta caaaatggta
     1981 aaattggatt actcagattg aaccatagcc tctactttag tcggctaaca aaaacaatta
     2041 tagtaatgaa aaaaccaaat ttttatggca agatgggtag aactgcactt tcaagtcttt
     2101 tctacctctt tttcctaggc cttgtgtatg ggcaacaacc tacgaagact tcaaatccga
     2161 acgatcagtg gaccatcaaa tggagtgctt cggacgaatt caacaaaaat gaccccgact
     2221 gggcaaaatg gatcaagaca ggaaaccttc cgaatacatc ggcatggaaa tggaacaatc
     2281 aaaaaaacgt aaagatttcc aacggaattg cggaactaac gatgaggcat aacgccaata
     2341 atacccctga cggaggaacc tatttcacct ctgggatatt taagtcgtac caaaaattta
     2401 cgtatggata ctttgaggcc aaaatccaag gagcggatat aggtgaaggc gtatgcccat
     2461 cgttttggct ttatagtgat ttcgactatt ccgtagccaa tggggaaacg gtatacagtg
     2521 aaatagatgt agttgaacta caacaattcg attggtatga aggccatcag gacgacattt
     2581 acgacatgga cttaaatcta cacgccgttg tcaaagaaaa cggacagggg gtttggaaaa
     2641 ggccaaaaat gtaccctcaa gaacagttga acaaatggag agccccatgg gacccgagta
     2701 aagactttca tatctatggt tgtgaagtga accagaacga aatcatatgg tatgttgacg
     2761 gtgtcgaggt tgcccgaaaa ccaaataaat attggcatcg ccccatgaac gttacccttt
     2821 cattgggact cagaaaacca tttgtgaaat ttttcgacaa taagaacaat gccataaatc
     2881 cagaaaccga tgccaaggca agggaaaaat tatcggatat acctacatcg atgtatgtgg
     2941 attacgttcg ggtctgggaa aaatcagcag gtaacactac caatccccca accagcgagg
     3001 tcggcacact aaaaaacaaa gggttcgaaa ctggtgattt gacccattgg gatgcaagta
     3061 cagggactat ttcggctgtc agtaacaata caaagacagg tcaatatgcc ggttcagtga
     3121 acaacgcgag catcgcccag atagtaacat taaaagcgaa tacttcatat aaggtatcgg
     3181 ctttcggaaa ggccagctca cccggaacat cggcttatct aggcattagt aaagcatcca
     3241 acaacgaact cataagcaat tttgaattca aaacaacctc atactccaaa ggcgagattg
     3301 agataagaac tggaaatgtt caggaatcat atcgcatatg gtattggtct tccgggcaag
     3361 cctattgcga tgattttaac cttgttgaaa taaacagcgg ggcttcacaa ctcaatgaaa
     3421 atgagactga aacagcactg gaaaaaggta tacacattta tccgaatccc tataaaaacg
     3481 gtccattgac aatcgatttt ggcaaaccct tcagcggcga ggtccaaatc accggtttaa
     3541 acggtagaac attcttaaga agaaatgttg tcgatcaaac ttcggttcag ctcctagaat
     3601 ccaaatctaa attcaagagc ggtctatata tcgttaaaat tagtggcccg gatggagagg
     3661 tttcaaaaaa gatactcgtg gagtaa
//
