LOCUS       NZ_HG326223             4536 bp    DNA     linear   CON 20-NOV-2019
DEFINITION  Serratia marcescens subsp. marcescens Db11, complete genome.
ACCESSION   NZ_HG326223
VERSION     NZ_HG326223.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3138834
            Assembly: GCF_000513215.1
KEYWORDS    RefSeq; complete genome.
SOURCE      Serratia marcescens subsp. marcescens Db11
  ORGANISM  Serratia marcescens subsp. marcescens Db11
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Yersiniaceae; Serratia.
REFERENCE   1
  AUTHORS   Iguchi,A., Nagaya,Y., Pradel,E., Ooka,T., Ogura,Y., Katsura,K.,
            Kurokawa,K., Oshima,K., Hattori,M., Parkhill,J., Sebaihia,M.,
            Coulthurst,S.J., Gotoh,N., Thomson,N.R., Ewbank,J.J. and Hayashi,T.
  TITLE     Genome evolution and plasticity of Serratia marcescens, an important
            multidrug-resistant nosocomial pathogen
  JOURNAL   Genome Biol Evol 6 (8), 2096-2110 (2014)
   PUBMED   25070509
REFERENCE   2  (bases 1 to 4536)
  AUTHORS   Aslett,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JUN-2013) Pathogen Sequencing Unit, Wellcome Trust
            Sanger Institute, Wellcome Trust Genome Campus, Hinxton,
            Cambridgeshire, CB10 1SA, UNITED KINGDOM
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/20/2019 11:17:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
            Annotation Method                 :: Best-placed reference protein
            Annotation Software revision      :: 4.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
            Genes (total)                     :: 4,836
            CDSs (total)                      :: 4,710
            Genes (coding)                    :: 4,678
            CDSs (with protein)               :: 4,678
            Genes (RNA)                       :: 126
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 16
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 19 of 32
            Pseudo Genes (incomplete)         :: 14 of 32
            Pseudo Genes (internal stop)      :: 7 of 32
            Pseudo Genes (multiple problems)  :: 7 of 32
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence was derived from
            HG326223.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Annotation Pipeline (PGAP)
            set; GeneMarkS-2+
            repeat_region
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4536
                     /organism="Serratia marcescens subsp. marcescens Db11"
                     /mol_type="genomic DNA"
                     /strain="Db11"
                     /sub_species="marcescens"
                     /db_xref="taxon:273526"
                     /chromosome="I"
     gene            complement(1..402)
                     /locus_tag="SMDB11_RS14210"
                     /old_locus_tag="SMDB11_2873"
                     /db_xref="GeneID:23389257"
     CDS             complement(1..402)
                     /locus_tag="SMDB11_RS14210"
                     /old_locus_tag="SMDB11_2873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004936549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gnl|TC-DB|D4E385|1.E.2.1.11"
                     /protein_id="WP_025303803.1"
                     /db_xref="GeneID:23389257"
                     /translation="MLNDIEEIRFTARSEENLRGVHPDLVRVIRLALRYSLVPFSVSEG
                     LRSMARQREMVRAGSSQTLRSRHLTGHAVDVVAMPAGVVSWEWDYYAQIAVAVRRAARE
                     CGIIVEWGGEWKTLKDGPHFQLTFRDYPA"
     gene            complement(392..718)
                     /locus_tag="SMDB11_RS14215"
                     /old_locus_tag="SMDB11_2874"
                     /db_xref="GeneID:23389258"
     CDS             complement(392..718)
                     /locus_tag="SMDB11_RS14215"
                     /old_locus_tag="SMDB11_2874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004936551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gnl|TC-DB|D4E385|1.E.2.1.11"
                     /protein_id="WP_004936551.1"
                     /db_xref="GeneID:23389258"
                     /translation="MSSIEPDAVGLIVQRVCEYLQPVLNAILAGVMALLHGAYRNVGIR
                     RRLLNAAMCALLAWTVRDALALMGLELKWANLASVLIGFMGADYINALIKKFIGKKTGF
                     KNVK"
     gene            1012..2511
                     /locus_tag="SMDB11_RS14220"
                     /old_locus_tag="SMDB11_2875"
                     /db_xref="GeneID:23389259"
     CDS             1012..2511
                     /locus_tag="SMDB11_RS14220"
                     /old_locus_tag="SMDB11_2875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012146188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBM5|GH18"
                     /protein_id="WP_025303804.1"
                     /db_xref="GeneID:23389259"
                     /translation="MSTRKAVIGYYFIPTNQINNYTETDTSVVPFPVSNITPAKAKQLT
                     HINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSNDLG
                     VSHANYVNAVKTPASRTKFAQSCVRIMKDYGFDGVDIDWEYPQAAEVDGFIAALQEIRT
                     LLNQQTVTDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEK
                     VTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVP
                     SAKIVMGVPFYGRAFKGVSGSNGGQYSSHSTPGEDPYPNTDYWLVGCEECVRDKDPRIA
                     SYRQLEQMLLGNYGYQRLWNDKTKTPYLYHAQKGLFVTYDDAESFKYKAKYIKQQQLGG
                     VMFWHLGQDNRNGDLLAALDRYFNAADYDDSQLDMGTGLRYTGVGPGNLPIMTAPAYVP
                     GTTYAQGALVSYQGYVWQTKWGYITSAPGSDSAWLKVGRVA"
     gene            complement(2597..3538)
                     /locus_tag="SMDB11_RS14225"
                     /old_locus_tag="SMDB11_2876"
                     /db_xref="GeneID:23389260"
     CDS             complement(2597..3538)
                     /locus_tag="SMDB11_RS14225"
                     /old_locus_tag="SMDB11_2876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004947759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DBD-Pfam|HTH_1"
                     /protein_id="WP_025303805.1"
                     /db_xref="GeneID:23389260"
                     /translation="MTRLSLDAIKIISTIKSTGSFSMAAEALHKTPSAISYRVSNIESK
                     LCVKLFHRNGPMITLTDEGEFLLQEGSWILNAVQDLESRVRNIPKLDNNIRLAVDTFFP
                     LETLTQDIRDYIQHCPNASISVQREALNGTWDALKNNRADLIIAIGQIPDSVQAKTLML
                     GKLNFVLCVSPSHPFAAQRKPVCKKQRLNDIVVVIADSSHELPKRNHGTLPLQRQLVVC
                     DVESNLALLKRGIGHAFLPPALIEKELASGELVTVPVEMQKGDEMIWLAWHPASKGAGF
                     NWWHERLTRKSDVYSLMGREVVRDGGYPWCHN"
     gene            3943..4536
                     /locus_tag="SMDB11_RS14230"
                     /old_locus_tag="SMDB11_2877"
                     /db_xref="GeneID:23389261"
     CDS             3943..4536
                     /locus_tag="SMDB11_RS14230"
                     /old_locus_tag="SMDB11_2877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013814029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AA10"
                     /protein_id="WP_025303806.1"
                     /db_xref="GeneID:23389261"
                     /translation="MNKTSRTLLSLGLLSAAMFGVSQQANAHGYVESPASRAYQCKLQL
                     NTQCGSVQYEPQSVEGLKGFPQAGPADGHIASADKSTFFELDQQTPTRWNKLNLKTGPN
                     SFTWKLTARHSTTSWRYFITKPNWDASQPLTRASFDLTPFCQFNDGGAIPVAQVTHQCN
                     IPADRSGSHVILAVWDIADTANAFYQAIDVNLSK"
ORIGIN
        1 tcatgccggg tagtcccgga acgtcagctg gaagtgcgga ccatccttga gggttttcca
       61 ttcgccgccc cattcgacga tgatgccgca ttcacgcgcc gcgcgccgca ccgccaccgc
      121 aatctgcgcg tagtaatccc actcccagga gaccacaccc gccggcatcg ccaccacatc
      181 caccgcgtga ccggtcagat ggcggctgcg cagcgtttgg ctgctgccgg cgcgcaccat
      241 ttcccgctgg cgcgccatac tgcgcagccc ctcgctgacg gaaaacggca ccagggaata
      301 acgcagcgcc agacgaataa cgcgcaccag atccgggtgc acgccgcgca ggttttcttc
      361 gctgcgggca gtaaagcgaa tctcttcgat gtcatttaac atttttaaac cccgtctttt
      421 tgccgatgaa ttttttaatt aaggcgttga tgtaatccgc ccccataaaa ccaatcagta
      481 cgctggccaa attcgcccac tttaattcca ggcccatcaa cgccagcgca tcgcgcaccg
      541 tccaggccaa taacgcgcac atcgccgcat tcaataaacg gcgccgaata cccacgttgc
      601 gataggcacc gtgcaatagc gccatcacgc cggccagaat ggcgttcaat accggctgaa
      661 gatattcaca tactcgctgg actattaagc caacagcgtc aggctctatg ctggacatag
      721 ctcatctcct tttttatttt taattaaatg ccaatcacgg ccggtgggac atcggatatt
      781 cagaatctaa ttaaggatgc tattacaaag caaatgaata aatacagccc ctatggtcga
      841 attcattcat gctgagcgct ggcacaactc atcagcgcca atttgtgcag cagtgaataa
      901 aaattcattg tcattgtgat ttatttcgac ttttgttttc actaaaaata aacattaatg
      961 gcaacgggaa atatttcccc atcataaaaa catccactct ggagaaatgc catgtccaca
     1021 cgtaaagcgg ttattgggta ttattttatt ccgaccaacc aaatcaataa ttacaccgag
     1081 accgatacgt ctgtcgtgcc gttcccggtt tccaacatca cgccggccaa agccaaacag
     1141 ctgacgcaca tcaacttctc gttcctggat atcaacagca atctggaatg cgcctgggat
     1201 ccggccacca acgacgccaa ggcgcgcgat gtggtcaatc gtctgaccgc gctcaaagcg
     1261 cacaacccca gcctgcgcat catgttctcc atcggcggct ggtactactc caacgatttg
     1321 ggtgtgtcgc acgccaacta cgtcaacgcg gtgaagaccc cggcgtcgcg caccaagttt
     1381 gcccaatcct gcgtgcgcat catgaaggat tacggcttcg acggcgtgga catcgactgg
     1441 gagtatccgc aggcggcgga agtagacggt ttcatcgccg cgctgcagga gatccgcacc
     1501 ctgctgaacc agcaaaccgt caccgacggc cgccaggcgc tgccgtatca attgaccatc
     1561 gccggcgccg gcggcgcttt cttcctgtca cgctattaca gcaagctggc gcagatcgtc
     1621 gcgccgctcg attacattaa cctgatgacc tacgatctgg ccggcccttg ggagaaggta
     1681 accaaccacc aggcggcgct gttcggcgac gcggccgggc cgaccttcta caacgcgctg
     1741 cgcgaagcca atctgggctg gagctgggaa gagctgaccc gcgccttccc cagcccgttc
     1801 agcctgacgg tcgacgctgc ggtgcagcaa cacctgatga tggaaggcgt gccgagcgcc
     1861 aaaatcgtga tgggcgtccc cttctacggc cgcgccttca agggcgtcag cggcagcaac
     1921 ggcggccagt acagcagcca cagcacgccg ggtgaagatc cgtatccgaa taccgattac
     1981 tggctggtgg gttgcgaaga gtgcgtacgc gacaaggatc cgcgtatcgc ttcctatcgc
     2041 cagctggagc agatgctgct gggcaactac ggctatcagc ggctgtggaa cgacaagacc
     2101 aaaacccctt acctgtatca tgcgcagaaa gggctgttcg tcacctatga cgatgccgag
     2161 agcttcaaat acaaagcgaa atacatcaag cagcagcagc tgggcggcgt gatgttctgg
     2221 catctggggc aagacaaccg caacggcgat ctgctggccg cactggatcg ctatttcaac
     2281 gccgcggact acgacgacag ccagctagat atgggcaccg ggctgcgcta caccggcgtc
     2341 ggccccggta acctgccgat catgaccgcg ccggcctacg tgccgggcac cacttacgcg
     2401 cagggggcac tggtgtccta tcagggttac gtctggcaga ccaagtgggg ttacatcacc
     2461 tcggcgcccg gctcagacag cgcctggctg aaggtgggcc gcgtggcgta agccgtaaaa
     2521 aaaccccgta gccgaatgct gcggggtttt cattgagtta accgtttgat tttcgcgtcc
     2581 cttcgtctct attccatcag ttgtggcacc acggatagcc gccatcccgt accacttcgc
     2641 ggcccatcag gctgtagaca tcgcttttgc gcgtcagccg ctcatgccac cagttaaacc
     2701 cggcgccctt gctggccggg tgccacgcca gccaaatcat ttcgtcgccc ttttgcattt
     2761 ccaccggcac cgtcaccagt tcgccgctgg ccaattcctt ttcgatcaaa gcaggcggca
     2821 gaaaagcgtg gccgatgccg cgtttgagca gcgccaggtt gctttccacg tcgcatacca
     2881 ccaactgacg ctgcaagggc agcgtgccgt gattgcgctt gggcagctcg tggctgctgt
     2941 cggcgatcac caccacgatg tcgttcaacc gctgtttctt acacaccggt tttctctgcg
     3001 ccgcgaacgg gtgcgaaggc gacacgcata gcacaaagtt gagcttgccg agcatcaggg
     3061 ttttggcctg tacactgtcg ggaatttggc cgatggcgat gatcagatcc gcccggttgt
     3121 tcttcagcgc atcccaggta ccgttcaacg cttcccgctg caccgagata ctggcgttcg
     3181 ggcaatgctg aatatagtcg cggatatcct gcgtcagggt ttccaacggg aagaaggtgt
     3241 ctaccgccaa gcggatatta ttgtccagct tggggatgtt gcgcacccgg ctttccagat
     3301 cctgcaccgc atttaatatc cagctgccct cctgcaggag aaactcccct tcatccgtca
     3361 gggtaatcat ggggccattg cgatgaaaaa gtttcacgca gagtttgctt tcaatattgg
     3421 aaacccgata agaaatcgcc gaaggcgttt tatgcagtgc ctccgccgcc atagagaaag
     3481 atccggtgct cttgatggtg ctgattattt taatcgcgtc cagggataat ctagtcatac
     3541 aaattcctct ttaaaataaa ataagaaaaa tgacactaaa ttcccaaggt ggtggcgcac
     3601 aaaaatcgat caaatcgaac aagggtactc atagcaacaa gcaatatact tcataaatga
     3661 gagcgctatc ttaaatacta ttcatcacga cctgatataa aattcatcat agcgccctac
     3721 ttttacacag cgacagttaa ataaattcag cctaacgatc aaagatcgtc atcataataa
     3781 ttttcgttaa tagccgttaa aacattccgc tctatcgcat gaccagaatg ataaaaataa
     3841 aacaagccga caagaagggt tatttccaat tgcgttatta ctctctcatt ttgtcggtga
     3901 aatacgctca acttacaaca ttatttcagt caggagtgac ttatgaacaa aacttcccgt
     3961 accctgctct ctctgggcct gctgagcgcg gccatgttcg gcgtttcgca acaggcgaat
     4021 gctcacggtt atgtcgagtc gccggccagc cgcgcctacc agtgcaaact gcagctcaac
     4081 acgcagtgcg gcagcgtgca gtacgaaccg cagagcgtcg aaggcctgaa aggcttcccg
     4141 caggccggtc cggctgacgg ccacatcgcc agcgccgaca agtccacctt cttcgaactg
     4201 gatcagcaaa cgccgacgcg ctggaacaag ctcaacctga aaaccggccc gaactccttt
     4261 acctggaagc tgaccgcgcg tcacagcacc accagttggc gctatttcat caccaagccg
     4321 aactgggacg cttcgcagcc gctgacccgc gcttcctttg acctgacacc gttctgccag
     4381 ttcaacgacg gcggtgccat ccctgtcgcg caggtcaccc accagtgcaa cataccggca
     4441 gatcgcagcg gttcgcacgt gatccttgcc gtgtgggaca tagccgacac cgccaacgcc
     4501 ttctatcagg cgatcgacgt caacctgagc aaataa
//
