LOCUS       PJDT01000028            7431 bp    DNA     linear   BCT 11-DEC-2017
DEFINITION  Bifidobacterium longum strain APC1503 contig0028, whole genome
            shotgun sequence.
ACCESSION   PJDT01000028
VERSION     PJDT01000028.1
DBLINK      BioProject: PRJNA394834
            BioSample: SAMN07958360
KEYWORDS    WGS.
SOURCE      Bifidobacterium longum
  ORGANISM  Bifidobacterium longum
            Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae;
            Bifidobacterium.
REFERENCE   1  (bases 1 to 7431)
  AUTHORS   Arboleya,S.
  TITLE     Bifidobacterium longum APC/DPC strains
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 7431)
  AUTHORS   Arboleya,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2017) Microbiology, UCC, Western Road, Cork,
            Ireland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-SEP-2016
            Assembly Method        :: Velvet v. 1.2.10
            Expected Final Version :: yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            Bacteria available from APC Microbiome.
FEATURES             Location/Qualifiers
     source          1..7431
                     /organism="Bifidobacterium longum"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig0028"
                     /strain="APC1503"
                     /isolation_source="fecal sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:216816"
                     /country="Ireland"
                     /collection_date="30-Oct-2015"
     gene            1..1476
                     /locus_tag="APC1503_1956"
     CDS             1..1476
                     /locus_tag="APC1503_1956"
                     /codon_start=1
                     /transl_table=11
                     /product="gnl|TC-DB|P15993|2.A.3.1.3"
                     /protein_id="PKC87186.1"
                     /translation="MSTADAPKKPRETDDVPVPATLRKSLKNRHIQLIALGGAIGTGLF
                     YGSSESIALAGPSILLAYLVGGLAIFAIVRALSEMSVEDPKAGAFSYYATRYWSKRAGF
                     ISGWNYWFNYILVSMVELSVVGSFVNYWFPAIPTWVSAAVFLVIICAANLLGVSKFGEF
                     EFWFAIIKIVAVIAMIIGGLAVIIFVLPTASGVRASFANWFTVGNGFFPNGLMGQNSDG
                     SWTGLLMALVVVMFSFGGTELIGITAGETEDPKTTIPRATNDIIWRILVFYIGALGVIM
                     AVVPWNTIDGKSSPFVQIFDSVGIHAAAGILNFVCLTAVMSVYNSGLYANSRMLYSLAK
                     QGNAPAYLGKLNSRGVPVAGVLTSAAITAIAVVVVFVWPEFAFNYLMSIATIAGIINWT
                     MIMLTEMKFRKVVAAGGAPEDSELAGLSGQEALDAIHFKLPFAKVTPWVVLAFLALVVV
                     LMCFSTSYRIAVIAGVIWLAILFAAYQLTQAKK"
     gene            complement(1539..2951)
                     /locus_tag="APC1503_1957"
     CDS             complement(1539..2951)
                     /locus_tag="APC1503_1957"
                     /codon_start=1
                     /transl_table=11
                     /product="DBD-Pfam|HTH_5,DBD-SUPERFAMILY|0043095"
                     /protein_id="PKC87267.1"
                     /translation="MAFIGRDDDLKQLQECFTERRAQLVFVYGRRRVGKTETLIQLAKD
                     KETLFFAAQNATKDEQLASFSRLMFEAGAPGKDYLSQYPSWERALTELTRLPEPSDGGR
                     RLVIFDEFPYLVKSDPSLPSVLQNLWDHTLRHANLMIVICGSAMSFIEKELLGEKSPLY
                     GRATGILKMLPMPYWDAAQFFPNYSGEDKALAYAILGGIPRYLEEFDPDETIDANVKRH
                     ILRRIAPLYSEVEFLLHEELRETAKYNSVIRAIALGATSLNEIATHTMMANATVSSYLA
                     NLMELGIVEREFPVTAKPKERAKGSRGLYQLSDNFFRFWYSFVFPYRSELERGDVEGVY
                     ERHIKPVLHDFAGKPFEGLCREWMWRESAAGRLPFRARAVGRWWDRQDEIDVMAVDNAS
                     DAAIVGECKFRNAPVDRSVLNLLRDRAARTGIGQRTYLLFSLGGFDQSLVDDAAASQSD
                     VQLVGIDELFHE"
     gene            complement(3294..6491)
                     /locus_tag="APC1503_1958"
     CDS             complement(3294..6491)
                     /locus_tag="APC1503_1958"
                     /codon_start=1
                     /transl_table=11
                     /product="GH43|GH43_22"
                     /protein_id="PKC87268.1"
                     /translation="MKHWKKMAASLVAISTMMAVVPTTYAMESEDSQPQTTDTATVQTT
                     KAAEPTLLASWDFTGKNGTTNSAIADSTGKYNLTLKDNAKIEQYGDRSNNEALSLRGGG
                     QYAQIDDQLFKDAGDSFTLEFASKTRHDDSGKFFSFIVGKDGSNDANTTDQSNANKYLM
                     FYNSKTAIKGVISNNNWGNEQGSKVTVSGNDNSWADYKIVVDGTNLAVFRDNALIIFKA
                     NTGIKMSDLGATTAYIGKSFYSVDEYWNGAMDDIKVYRGADLTMPTAVAISGTGVVNNK
                     LTLIEKDSTKLTATVTPDDAVSKNVTWSSSDESVAKVAADGTVTGVKAGTATITATTEL
                     GGVKAELPVTVEPMNAQNAAAADLDAAIAALKVPAAENLPLVAKGTKNGSAITWKSSDE
                     KLITSTNEKYENKTTGADDPYRGAGIINRPAYGDGDSKPVTLTATASYNGGEKVTKTIE
                     VTVKEKTRIAPDTGYAAVTFESDSNGGEKAWVASTEKNDFFTFKTRNNGQAVLTNDADT
                     GGLRDMFVLRSHEGDKYYLIATDLKVSSMGWSQNQVNGSRKVEVYESTDMMNWTRTNGD
                     GNGGITINTPNAGMTWAPEAYWDDDLNAYVVFFSSRMFTDDTRTTPVKNDKTGNSSYAQ
                     VRYAITRDFVNFTEPQMWQDTGYSRIDSTVRKIGGYYYRFTKNEQGGAAGDYITTGKSI
                     FLERSKVLTAPTTEASPGQDPNTGWQLLEQALLPFEGPETIKLNKDDELNTKDDDGYIL
                     LSDNFAYRAFMTTGAELSKTTWDNPMTKRYPDFNNEKKPVKAEPGAQGYITQGANGGLP
                     DKVRHGAFVNVPESVLKVTKSWTAANPTHIEAVDSTTKAVYNAGTRELTATVTAADKGT
                     LAGSVKFSAGDWSKTVKLDAEGKATVTLPASVSGTVAVAYDGYTDGLVNPSDTTVDGIE
                     QGKVDLAELNKQIAAAEALKESDYTADSWAALAKALQAAKAALASSDQAVVDKAAADLS
                     AAIAALQKAETPTKPDTGDGDNKGDNAGDKTDNKTDDTKSDGKLPATGAAVYGVSGAMV
                     LLAAAGTALSIWRKRRA"
     gene            complement(6826..7431)
                     /locus_tag="APC1503_1959"
     CDS             complement(6826..7431)
                     /locus_tag="APC1503_1959"
                     /codon_start=1
                     /transl_table=11
                     /product="gnl|TC-DB|E4R229|9.B.28.1.3"
                     /protein_id="PKC87269.1"
                     /translation="MNWLAPDSKFMRAWSNLVDGVWINILMLVTSIPIITIGAALTAGH
                     DACRRSIEGEGKGVTSNYFKSFKTNFIKATLLWLPFLVALIALVWSWIVLQITPLLIIK
                     FALTILWLIGFEWVFALQARFENTVAGTLKNAFIFGISHIAMTVALVIVDAVFVALLAA
                     SWFHMPGGLFLLVILGYGTMLMLHIPVAERVFKPYLID"
ORIGIN
        1 atgagtactg ctgatgcgcc taagaagccg cgcgaaaccg acgacgtgcc ggtgccggcc
       61 acgctgcgca agtcactgaa gaaccgtcat atccagctga ttgcactggg cggcgccatc
      121 ggaaccggcc tgttctatgg ttccagtgaa tccatcgcgc tggccggacc ctcgattctg
      181 ctcgcctact tggttggcgg cctcgcgatt ttcgcgattg tgcgtgcact gtctgaaatg
      241 tccgttgagg atccgaaggc gggcgcgttc agctactatg ccacccgcta ctggtccaag
      301 cgcgccggct ttatttccgg ctggaactac tggttcaact acatcctcgt ctcgatggtg
      361 gagctatcag tggtgggttc gtttgtgaac tactggttcc cggcgattcc gacatgggtg
      421 tcggcggccg tgttcttggt gatcatctgc gccgccaacc tgctgggcgt ctctaaattc
      481 ggtgagttcg agttctggtt cgccatcatc aagattgtgg ccgtgatcgc catgattatc
      541 ggcggcctgg ccgtcatcat ctttgtcctg cccaccgcat ccggcgtgcg cgcaagcttc
      601 gcgaactggt tcaccgtggg taacggcttc ttcccgaacg gcctgatggg gcagaattcc
      661 gacggttcct ggaccggcct gctgatggca ctggttgtgg tgatgttcag cttcggcggc
      721 accgagctca tcggcatcac cgccggcgaa accgaggatc cgaagaccac gattccgcgc
      781 gccaccaatg atattatttg gcgaatcctc gtgttctaca tcggcgctct gggtgtgatc
      841 atggccgtag tgccgtggaa caccatcgat ggcaagtcca gcccgttcgt gcagatcttc
      901 gattccgtgg gcattcacgc ggctgccggt attttgaact tcgtgtgcct gaccgctgtg
      961 atgagcgtct acaactccgg cctgtacgcc aactcccgca tgttgtactc gctggccaag
     1021 cagggcaatg cgcccgctta cttgggcaag ctcaactcgc gcggcgtgcc agtggccggc
     1081 gtgctgacgt ccgccgcgat caccgccatc gccgtggtcg tggtgttcgt gtggcctgag
     1141 ttcgcgttca actacctgat gtcgattgcc accattgccg gcatcatcaa ctggacgatg
     1201 atcatgctca ccgaaatgaa gttccgtaag gtggtcgccg cgggcggcgc tcccgaggat
     1261 tccgagctgg ccggtctgag cggccaggag gcactggacg cgattcactt caaactgccg
     1321 tttgccaagg tgaccccgtg ggtggtgctg gcgttcctgg cgctggtcgt ggtgctgatg
     1381 tgcttctcca ccagctaccg catcgccgtc atcgccggcg tgatctggct ggccatcctc
     1441 ttcgccgcct accagctcac tcaggcgaag aagtaaggct ccatttgcga atagctctca
     1501 ctgatgagca ctcagtgaga gctattcgca aatgggattt attcatgaaa cagctcatcg
     1561 atgccgacga gctgaacgtc ggattgagac gccgcagcat cgtcgaccag tgattgatcg
     1621 aaaccgccga gcgaaaacag caggtatgtt cgctggccga taccggttcg cgcagcacgg
     1681 tctcgcagta gattcagcac ggaacggtcc accggcgcat tgcggaattt gcactcgccc
     1741 acaatggcag catcagacgc attgtcaacg gccatcacgt ctatctcatc ctgacgatcc
     1801 caccaacggc caaccgcacg cgcacggaag ggcaaccgtc cagcagcact ctcacgccac
     1861 atccattcac ggcacagacc ctcgaacggt ttgccggcaa aatcatgtaa taccggcttg
     1921 atatgacgct cgtatacgcc ttccacatcg ccccgctcca attccgaacg atacggaaag
     1981 acaaacgaat accagaatcg gaagaaattg tcgctcagct gatacagccc acgcgaacct
     2041 ttcgcccgct ccttaggctt cgccgtgact gggaactcac gttccacaat ccccagttcc
     2101 ataagattgg cgagatacga cgatactgtt gcgtttgcca tcatcgtgtg tgtcgcgatc
     2161 tcattcagcg aagttgcgcc gagcgcgatc gcccgtatca cgctgttata tttcgcagtt
     2221 tcccgcagtt cttcgtgcaa caaaaattca acctcgctgt atagcggagc aatgcgtctc
     2281 agaatatgcc gcttgacatt tgcgtctatg gtctcatctg ggtcaaattc ctctaggtaa
     2341 cgcgggatac cgcccagtat tgcgtaggcc agcgccttat cctcgccact atagttgggg
     2401 aagaattgcg ctgcatccca atatggcatc ggcagcatct tcaggatgcc ggtcgcacga
     2461 ccatatagcg gcgatttttc tcccaacagc tccttttcga tgaagctcat ggcactgccg
     2521 caaatcacaa tcatcagatt tgcatgacgc aacgtgtggt cccaaagatt ctgtagcact
     2581 gacggcaatg acggatcaga tttgaccaga taaggaaact catcgaatat cacaagcctg
     2641 cggccgccat cgctcggctc cggcagccgg gttaactcgg ttaacgccct ttcccaagaa
     2701 ggatattgac tcagataatc cttgcccggg gcacccgcct cgaacatgag acgggagaac
     2761 gatgccagct gttcatcttt agtggcattc tgcgccgcga agaataaggt ttccttgtct
     2821 tttgcgagtt gaataagcgt ctctgttttt cccacgcgcc tgcggccgta gacgaacaca
     2881 agctgtgccc tacgctcagt gaaacattcc tgcagttgct tgaggtcatc gtctcgtccg
     2941 atgaatgcca tgctgcccgc ctcctttatg ccatacgccg gcgtatttct atcgcatcac
     3001 gatttattgt atcacgatta gtataatcgt gattatacaa gctgtgacga ggtgcgggta
     3061 cgggccaatt tgcaaaaact ctcactgagg gggaggtggt gacggctttg aggtcgagct
     3121 tgccgcaggt caggtagact cgacctcaaa gccgtcacca ccacttgacc atcacccacc
     3181 acaaacagcg aatagccaaa aaaatgacgc atgtgctgtt atacattaaa acgcacagaa
     3241 aatcacacat atactgtgcg attttctgtg cgttgcagtg agcagctact cagttatgcg
     3301 cggcgcttgc gccagatgga cagcgcagtg ccggcagcgg cgagcagcac catggcaccg
     3361 ctcacgccat atacggcggc accggtggcc ggcaacttgc cgtcagactt ggtgtcatcg
     3421 gtcttgttgt cggtcttgtc gcctgcgtta tcgcccttgt tgtcaccatc gccggtgtcc
     3481 ggcttggtgg gcgtttccgc cttctgcaat gctgcgatgg cggcgctcag atcagcggcg
     3541 gccttgtcaa ccacagcctg gtcggaggaa gcgagcgcag ccttggcggc ctgcagtgcc
     3601 ttggcgagcg cagcccagga atcagccgtg taatcggatt ccttgagcgc ttcggcagcg
     3661 gcgatctgct tgttgagctc agccaaatcg accttgccct gttcaatgcc gtcaaccgta
     3721 gtatcggatg gattgaccaa accatcggtg tagccgtcgt aagcaaccgc aacagtgcca
     3781 gagacgctgg ccgggagggt cacagtggcc ttgccttcgg cgtcgagctt cacggtcttg
     3841 gaccagtcgc cagcagagaa cttcaccgaa ccggcgagcg tgcccttatc ggcggcggtc
     3901 accgtggctg tgagctcgcg ggtgccggcg ttgtacacgg ccttggtggt ggagtcaaca
     3961 gcctcgatgt gcgtcgggtt ggcagcggtc caggacttcg tcaccttgag cacagactca
     4021 ggcacgttca cgaacgcacc gtgacgcacc ttgtccggca gaccgccgtt agcaccctga
     4081 gtgatgtagc cctgagcgcc cggctcggct ttgaccggct tcttttcgtt gttgaagtcc
     4141 gggtaacgct tggtcatcgg gttgtcccac gtggtcttgg aaagctcggc acccgtggtc
     4201 ataaatgcac ggtaggcgaa gttgtcggac agcagaatgt agccgtcgtc gtccttcgtg
     4261 ttgagttcgt catccttgtt gagcttgatg gtctctggtc cttcgaacgg cagcaacgcc
     4321 tgctcgagca gctgccaacc ggtgttcggg tcctgacccg gagatgcctc ggtggtcggt
     4381 gcagtcagca ccttggaacg ctcaaggaag atgctcttac cagtggtgat gtaatcgcca
     4441 gcggcaccgc cctgctcatt cttggtgaat cggtagtagt agccaccgat cttacgcacg
     4501 gtggaatcaa tgcgcgagta gccggtgtcc tgccacatct gcggctcggt gaagttcacg
     4561 aagtcgcggg tgatggcgta acgcacctga gcataggagc tattgccggt tttgtcgttc
     4621 ttgaccggag tggtacgggt gtcatcagtg aacatgcggg aagagaagaa caccacgtaa
     4681 gcgttcaggt catcatccca gtaagcttcc ggcgcccagg tcataccggc gttcggcgtg
     4741 ttgatggtga tgccgccgtt gccgtcgccg ttggtacggg tccagttcat catatcggtg
     4801 gactcgtaga cctcaacttt ccgagaaccg ttaacctggt tctggctcca gcccattgac
     4861 gagaccttga gatcagtggc aatcaggtag tacttgtcgc cttcgtggga acgcagcacg
     4921 aacatgtcac gcaagccacc cgtgtctgca tcattggtaa gtaccgcctg gccattgttg
     4981 cgagtcttaa acgtgaagaa atcgttcttc tcagtggaag ccacccaggc cttttctcca
     5041 ccgttgctgt cgctctcaaa agtgacggcc gcatagccgg tgtcaggcgc gatgcgggtc
     5101 ttctccttga cagtgacctc gatggtcttg gtgaccttct caccgccgtt gtaggaagcg
     5161 gtggcggtca gcgtaaccgg cttggaatca ccgtcgccgt aggccggacg attgatgatg
     5221 ccagcaccac gatacgggtc atcggcacca gtggtcttgt tttcgtactt ctcgttagtg
     5281 gacgtaatga gcttctcgtc cgaggacttc cacgtaatcg ccgagccgtt cttggtgccc
     5341 ttggcgacta gcggcagatt ctcggccgcc ggaactttca gcgcagcaat cgcggcatcg
     5401 aggtcggctg cggcggcgtt ctgggcgttc atcggctcaa cggtgacggg cagttcggcc
     5461 ttcacaccac ccagctcagt ggtggcggtg atggtggcag taccagcctt gacgccggtt
     5521 acagtaccgt ctgcggcgac cttggccacg gactcatcgg aggaggacca ggtgacgttc
     5581 ttgctcacgg cgtcgtccgg agtgacggtg gcggtgagct tggtggagtc cttctcaatc
     5641 agggtgagct tgttgttcac cacaccggta ccggaaatcg caacggcggt cggcatggtc
     5701 aggtcagcgc ccctgtagac cttgatatca tccattgcac cattccagta ctcatcgacg
     5761 gagtagaacg acttgccgat gtaggcggtg gtcgcaccga gatcgctcat cttgatgccg
     5821 gtgttggcct tgaaaatgat cagggcattg tcgcggaaca cggcaaggtt ggtgccgtcc
     5881 acgacaatct tgtaatcggc ccagctgttg tcgttgccgg aaacggtgac cttggatccc
     5941 tgttcgttac cccagttgtt gttggagata acgcccttga tggcggtctt gctgttgtag
     6001 aacatcaggt acttgttggc gttggactga tcggtggtgt tggcgtcgtt cgaaccgtcc
     6061 ttgccgacga tgaacgagaa gaacttgccg ctgtcgtcgt gacgagtctt ggacgcgaac
     6121 tccagagtga aggagtcgcc ggcgtccttg aacagctggt catcgatctg ggcatactgg
     6181 ccaccgccgc gcagtgagag cgcctcattg ttgctgcggt caccgtactg ttcgatcttg
     6241 gcgttgtctt tcagcgtcag gttgtacttg ccggtcgaat cggcaatcgc gctgttcgtg
     6301 gtgccgtttt tgcccgtgaa gtcccagctg gcgagcagcg tcggttcagc agccttagta
     6361 gtctgcactg tcgcggtatc ggttgtctgt ggttgggaat cttccgattc catggcatac
     6421 gtcgtcggaa ctactgccat catcgttgat attgcaacca acgatgctgc catcttcttc
     6481 caatgcttca ccgcatctct ccttgtcctt tgcctcgacc cacttgtcga gtgtctcgtt
     6541 cgcctctacg tgaacgcaaa cattatttgc gatgatacca ttacggcact gagactcagt
     6601 gtgccagatt ccttatgtat ataagcactt acggggggca accgcccagc ccgaacactc
     6661 cccgtatgcc aaaagccccc ttccaagcca atcactaata cccctcaatc ggcaccccgc
     6721 tccgccagcc gccccaaact gttattaatt tgttatcttt accgcgcttg cgtggacaga
     6781 gagcgctcag acctcgaaga tcgccgcata ttcgtgagaa cccgcctagt caatgagata
     6841 tggcttgaag acacgctcgg cgacggggat atggagcatc agcatggtgc cgtaaccaag
     6901 gatcaccagc aggaacagtc caccgggcat gtggaaccag ctggccgcca gcagtgccac
     6961 gaacacggca tccacgatga ccagggccac ggtcatcgcg atgtgggaga tgccgaagat
     7021 gaaggcgttc ttcaaggtgc cggccacggt gttctcgaag cgtgcctgaa gcgcgaacac
     7081 ccattcgaaa ccgataagcc agaggatggt cagcgcgaat ttgatgatga gcagcggcgt
     7141 gatctgcagg acgatccatg accagaccag tgcaatcagc gccaccaaga acggcagcca
     7201 cagcagtgtg gctttgatga agttggtttt gaatgacttg aagtagttgg aggttacgcc
     7261 tttgccctcg ccctcgatgg agcggcggca agcatcatgg ccggcagtca gggccgcacc
     7321 gatggtgatg atcggaatcg aagtgaccag catcagaatg ttgatccata cgccgtcaac
     7381 aagattgctc cacgcgcgca tgaatttcga gtccggtgcc agccagttca t
//
