LOCUS       CP000410                7450 bp    DNA     linear   BCT 02-MAY-2018
DEFINITION  Streptococcus pneumoniae D39, complete genome.
ACCESSION   CP000410
VERSION     CP000410.2
DBLINK      BioProject: PRJNA16374
            BioSample: SAMN02604051
KEYWORDS    .
SOURCE      Streptococcus pneumoniae D39
  ORGANISM  Streptococcus pneumoniae D39
            Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7450)
  AUTHORS   Lanie,J.A., Ng,W.L., Kazmierczak,K.M., Andrzejewski,T.M.,
            Davidsen,T.M., Wayne,K.J., Tettelin,H., Glass,J.I. and Winkler,M.E.
  TITLE     Genome Sequence of Avery's Virulent Serotype 2 Strain D39 of
            Streptococcus pneumoniae and Comparison with That of Unencapsulated
            Laboratory Strain R6
  JOURNAL   J. Bacteriol. 189 (1), 38-51 (2007)
   PUBMED   17041037
REFERENCE   2  (bases 1 to 7450)
  AUTHORS   Lanie,J.A., Ng,W.-L., Kazmierczak,K.M., Andrzejewski,T.M.,
            Davidsen,T.M., Wayne,K.J., Tettelin,H., Glass,J.I. and Winkler,M.E.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-JUL-2006) The Institute for Genomic Research, 9712
            Medical Center Dr, Rockville, MD 20850, USA
REFERENCE   3  (bases 1 to 7450)
  AUTHORS   Lanie,J.A., Ng,W.-L., Kazmierczak,K.M., Andrzejewski,T.M.,
            Davidsen,T.M., Wayne,K.J., Tettelin,H., Glass,J.I., Rusch,D.,
            Podicherti,R., Tsui,H.-C.T. and Winkler,M.E.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-MAY-2018) The Institute for Genomic Research, 9712
            Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Sequence update by submitter
COMMENT     On May 2, 2018 this sequence version replaced CP000410.1.
            Source bacterial stock (NCTC 7466) is available from the National
            Collection of Type Cultures, London, UK.
FEATURES             Location/Qualifiers
     source          1..7450
                     /organism="Streptococcus pneumoniae D39"
                     /mol_type="genomic DNA"
                     /strain="D39"
                     /culture_collection="NCTC:7466"
                     /db_xref="taxon:373153"
     gene            complement(1..1320)
                     /locus_tag="SPD_1582"
     CDS             complement(1..1320)
                     /locus_tag="SPD_1582"
                     /EC_number="3.2.1.26"
                     /note="equivalent gene in S.pneumoniae TIGR4 = SP1795;
                     equivalent gene in S.pneumoniae R6 = spr1617; identified by
                     match to protein family HMM PF00251; match to protein
                     family HMM TIGR01322"
                     /codon_start=1
                     /transl_table=11
                     /product="GH32"
                     /protein_id="ABJ55502.1"
                     /translation="MINKTFTVEKANRFIAENKHLVNTQYKPEEHFSAEIGWINDPNGF
                     VYFRGEYHLFYQFYPYDSVWGPMHWGHAKSKDLVTWEHLPVALAPDQDYDRNGCFSGSA
                     IVKDDRLWLMYTGHIEEKTGVRQVQNMAFSDDGIHFEKISQNPVATGSDLPDELIAADF
                     RDPKLFEKDGRYYSVVAAKHKNNVGCIVLLGSDNLVEWQFESIFLKGVEHQGFMWECPD
                     YFELDGKDCLIMSPMRYQREGDSYHNINSSLLFTGKVDWGEKCFIPESVQEIDHGQDFY
                     APQTLLDDQNRRILIAWMQTWGRTLPTHDQEHKWACAMTLPRILRLEDGKLRQFPVKKG
                     QYQIQIDKDCHYHLGNDTDYLEFGYDSNVQQVYIDRSHLIQKILGEEEQDTSRRYVDIE
                     AKELEVVLDKNSIEIFVNQGEASLTATYYLTVPAELSRID"
     gene            complement(1330..2175)
                     /locus_tag="SPD_1583"
     CDS             complement(1330..2175)
                     /locus_tag="SPD_1583"
                     /note="equivalent gene in S.pneumoniae R6 = spr1618;
                     identified by match to protein family HMM PF00528"
                     /codon_start=1
                     /transl_table=11
                     /product="gnl|TC-DB|Q7WWQ8|3.A.1.1.20"
                     /protein_id="ABJ54402.1"
                     /translation="MKRFKPTTILEYILLTLLAGLFLFPMVWMVVSAMKPEADVYKNLT
                     SWQAFLPSLNPADWFKPYQEVFERFSIFTYLGNSIFYAGTFAIGSIIVNALAGFAFAKV
                     NFSGKKILFGFLLALLIIPVETVLIPQFTIINSLGLVNNRLAVIIPGLASVFNIYLFRN
                     FFIAIPEEILESAKMDGASIVRIFFRIMLPMSKPAVATVGVLSFISSWNDYIWPLMVLT
                     DSSKFSMQVAITTINTTQPVYINQVMAVLTISTIPLILVYVVAQKYIVQGLGGSGTGIK
                     "
     gene            complement(2177..3079)
                     /locus_tag="SPD_1584"
     CDS             complement(2177..3079)
                     /locus_tag="SPD_1584"
                     /note="equivalent gene in S.pneumoniae R6 = spr1619;
                     identified by match to protein family HMM PF00528"
                     /codon_start=1
                     /transl_table=11
                     /product="gnl|TC-DB|Q7WWQ9|3.A.1.1.20"
                     /protein_id="ABJ53998.1"
                     /translation="MSKETVVDTKRREKIKDNILGYSFLAPALILLGIFLVIPVGMVIY
                     YAFTDYYLLTPDERKFVGLENFIRLTKDPIFLKSFLNTLKFVVWIIPVQLGAALGMALI
                     VNKKRKGNMFFKVAFFAPVVMSLVVISILWLYLLNPNSGLLNAILNKVGIASQPFLTSP
                     KQAMYAIVFVSAWQGAGYQMLLFLGGMQNIPQDVYEAAELDGFSKWAQFRYITMPLLKP
                     TALFVLLTTLISAFKLIVQPMVMTQGGPLNSTITMVYYIYQQGFTDRLVGYSSSIALVF
                     TTLIGMISLVQRRVLKEDD"
     gene            complement(3175..4485)
                     /locus_tag="SPD_1585"
     CDS             complement(3175..4485)
                     /locus_tag="SPD_1585"
                     /note="equivalent gene in S.pneumoniae R6 = spr1620;
                     identified by match to protein family HMM PF01547"
                     /codon_start=1
                     /transl_table=11
                     /product="gnl|TC-DB|Q7WWR0|3.A.1.1.20"
                     /protein_id="ABJ55241.1"
                     /translation="MRKGTMLSVVAGLSLAILAGCSGGTNSKQASSSNDIKVWVQFSDE
                     TNEGKAWQKVVDNFNQSGKSKYKVVTEYIPRSGSGGGYEDKVNAAITTNSLPDVITLDG
                     PNTAAYAKSKVITPLDDYLKDNNMDDVLDSIKQQGTYNGKFYAFGFSESNVGVYYNKKM
                     FKEAGIAESELPTLEKPWTWDEFNTIAKKLKDHYNKPTIDFRINSNDEMLPYAYMPLIW
                     SNNGSVVNEDGTKAEGYFNSKESVEAVQFIQNLVKEGYTTVSPVEKGFETGEYPMLLSG
                     SWTIADMNTNYKDIDFGILPYPVSSKTKKLVSPSGSWQLAVTTKSDKKEAASEFVKFAT
                     NTESSEIISLGNSVLPIRKSTIENIKDKVSEPMRFLMEQNSKTAHARPVVVAYPQVSRA
                     FQQAMQDISYYEENPNVQKVLDTRTKEMQTAIDQSLK"
     gene            complement(4612..5607)
                     /locus_tag="SPD_1586"
     CDS             complement(4612..5607)
                     /locus_tag="SPD_1586"
                     /note="equivalent gene in S.pneumoniae R6 = spr1621;
                     identified by match to protein family HMM PF00356; match to
                     protein family HMM PF00532"
                     /codon_start=1
                     /transl_table=11
                     /product="DBD-Pfam|LacI,DBD-SUPERFAMILY|0036955"
                     /protein_id="ABJ53841.1"
                     /translation="MVEQRKSITMKDVALEAGVSVGTVSRVINKEKGIKEVTLRKVQRA
                     IKTLDYIPDNYARGMKKNRTETIALIIPSIWHPFFSEFAYHVEKELLKYNYKLFICNAD
                     SDSQNEIEYIEMLKQNKVDGIIGITYSDIDKYILSDLPFVSIDRHFSENVCYVTSANYK
                     GGQTAAEELVRRDNKHLAFIGSINMYENETILRSKGFREKAKELGVDVYNFEMKEPLIN
                     PEDQIRIFLQSHKEIDGIFTINDMMALRVISVMKELGKIAPDDYQIIGFDGLKTSVDQS
                     YLVSTIVQDIGMMAKESVAMILKMIKREEILEKRIVIPTYFWGDKTTKKI"
     gene            complement(5969..7450)
                     /locus_tag="SPD_1587"
     CDS             complement(5969..7450)
                     /locus_tag="SPD_1587"
                     /note="equivalent gene in S.pneumoniae TIGR4 = SP1800;
                     equivalent gene in S.pneumoniae R6 = spr1622; identified by
                     match to protein family HMM PF05043"
                     /codon_start=1
                     /transl_table=11
                     /product="DBD-Pfam|HTH_Mga,DBD-Pfam|Mga,DBD-Pfam|PRD_Mga,DB
                     D-SUPERFAMILY|0039384,DBD-SUPERFAMILY|0040266"
                     /protein_id="ABJ54596.1"
                     /translation="MRDLLSKKSHRQLELLELLFEHKRWFHRSELAELLNCTERAVKDD
                     LSHVKSAFPDLIFHSSTNGIRIINTDDSDIEMVYHHFFKHSTHFSILEFIFFNEGCQAE
                     SICKEFYISSSSLYRIISQINKVIKRQFQFEVSLTPVQIIGNERDIRYFFAQYFSEKYY
                     FLEWPFENFSSEPLSQLLELVYKETSFPMNLSTHRMLKLLLVTNLYRIKFGHFMEVDKD
                     SFNDQSLDFLMQAEGIEGVAQSFESEYNISLDEEVVCQLFVSYFQKMFFIDESLFMKCV
                     KKDSYVEKSYHLLSDFIDQISVKYQIEIENKDNLIWHLHNTAHLYRQELFTEFILFDQK
                     GNTIRNFQNIFPKFVSDVKKELSHYLETLEVCSSSMMVNHLSYTFITHTKHLVINLLQN
                     QPKLKVLVMSNFDQYHAKFVAETLSYYCSNNFELEVWTELELSKESLEDSPYDIIISNF
                     IIPPIENKRLIYSNNINTVSLIYLLNAMMFIRLDE"
ORIGIN
        1 ttaatcaatt cgtgatagct cagctggcac cgttaagtaa taagttgcag tcaagcttgc
       61 ttcaccttga ttaacaaaaa tctcgatgga atttttatct agaacaactt ccaattcttt
      121 agcttcaata tctacatacc gtcgactagt gtcctgttct tcttcaccta gaattttttg
      181 aataagatgg ctacgatcaa tgtaaacttg ctgcacatta ctgtcataac caaattcaag
      241 ataatctgta tcatttccta agtggtaatg acaatcttta tctatttgga tttgatattg
      301 gcctttttta acagggaatt gtcttagttt gccatcttcc aatcttagaa ttctaggtaa
      361 agtcatggca catgcccact tgtgttcttg gtcatgggtt ggaagggtac gcccccatgt
      421 ctgcatccaa gcaatcagga tacgacgatt ttgatcgtcc aacaatgttt gaggcgcata
      481 gaagtcttgg ccatgatcaa tttcttgaac tgattctggg ataaaacatt tttctcccca
      541 atctacctta cccgtgaaca aaagcgatga gttgatgtta tgatatgagt ctccctcacg
      601 ctgataacgc atgggtgaca taataaggca atctttccca tctaactcga agtaatctgg
      661 gcattcccac ataaagcctt ggtgttctac cccttttaaa aagatggatt cgaactgcca
      721 ttctactagg ttatcggacc ctagtagaac gatacagccc acattattct tgtgtttggc
      781 agctactacg gagtaatagc gtccatcttt ttcaaagagt tttggatcac ggaaatcagc
      841 agcaatcaac tcatctggca agtctgatcc agttgcaact ggattttggg aaatcttttc
      901 aaagtgaatc ccgtcatctg aaaatgccat attttgcact tggcggacac cggttttttc
      961 ttcgatatgc ccagtgtaca tgagccagag gcgatcatcc ttgacaatgg cagagcctga
     1021 gaaacaacca tttcggtcat aatcttgatc aggagcaagt gccactggca agtgctccca
     1081 agtcaccaag tccttacttt tagcatgtcc ccagtgcata ggcccccaaa cactatcata
     1141 tggatagaat tgataaaaga gatggtattc tccacgaaaa tagacaaatc catttggatc
     1201 attgatccaa ccaatctcag ctgaaaaatg ttcttcaggc ttatattgag tattaacgag
     1261 atgtttattt tctgctataa aacgattggc tttttctact gtaaatgttt tatttatcat
     1321 aagtatatcc tattttattc cagttccgga accacccaga ccttgaacaa tatatttctg
     1381 agcgactaca tagaccaaaa tcaacggaat cgttgaaata gttaatacag ccattacctg
     1441 attgatataa actggttgag ttgtattaat agttgtaatt gcaacctgca ttgaaaattt
     1501 agaagaatct gtcaaaacca tcaatggcca gatataatca ttccagcttg aaataaatga
     1561 taaaacacca actgtagcaa ctgcaggttt agacattgga agcataattc taaagaaaat
     1621 tctaacgata cttgctccgt ccatctttgc agactcaaga atctcttctg gaattgcaat
     1681 aaagaaattc ctaaataagt aaatattaaa tacactcgcc aatcctggaa taataactgc
     1741 aagacgatta ttgaccaaac ctaaggaatt gataatggta aattgtggaa ttaacacagt
     1801 ttccactgga ataataagta aagcaagtaa gaaaccaaat aaaattttct tacctgaaaa
     1861 attgactttt gcaaaagcga aaccggccag tgcattgaca ataatagaac caatagcaaa
     1921 cgttccagca taaaaaatgc tgttccctag atatgtaaaa atactaaagc gctcaaatac
     1981 ttcctgataa ggtttaaacc aatcagcggg atttaaactt ggtaagaagg cttgccaact
     2041 agtcaaattt ttataaacat ccgcttctgg cttcatagct gaaactacca tccaaaccat
     2101 aggaaaaagg aagagtcctg ccaataaagt taacagaata tattctaaga ttgttgttgg
     2161 tttaaatcgt ttcatcttag tcatcctcct tcagaacgcg acgttgtact aagctaatca
     2221 taccaattaa cgttgtaaat actaaagcga ttgagctaga atatcctaca agacgatcag
     2281 taaaaccttg ttgataaata tagtacacca tagtaattgt tgagtttaat ggcccacctt
     2341 gcgtcataac cattggttgt acaatcagct taaaagcaga aattaaagtt gttaacaata
     2401 caaacagggc tgttggtttt agtaggggca tcgtgatata acgaaactga gcccattttg
     2461 agaatccatc taattcagca gcttcataga catcttgtgg aatattctgc attcctccta
     2521 aaaataaaag catctgataa cctgcaccct gccaagcaga aacaaaaaca attgcataca
     2581 tagcttgttt aggactagtc aagaaaggtt gagaagcaat acctacctta tttaaaatag
     2641 catttaataa gccactattt ggatttaaaa gataaagcca aagaatagaa ataactacca
     2701 aggacatgac aactggagca aaaaaagcca ctttaaaaaa catatttcct tttcgctttt
     2761 tattgacaat caaagccatt cctaaggccg ctcccaattg aactggaata atccaaacaa
     2821 caaatttcaa agtattcaag aagctcttta agaaaatcgg atcttttgtt aatcgaataa
     2881 aattttcaag tccaacaaat tttctttcat ctggtgtcaa caaataataa tctgtaaaag
     2941 cgtaataaat gaccattcca actggaatta ctaaaaagat acctaataaa attaaagctg
     3001 gagctaaaaa actataacct aatatgttat cctttatttt ttcacgtctt tttgtatcca
     3061 caacagtttc tttactcata tccatctcct ttaatcatat atatcaaact aggctattaa
     3121 caagaaaggg gaaggtagtt ccaaacattt tccttccacc ttctttttta cagattattt
     3181 gagtgactga tcaatagcag tttgcatttc ttttgtacga gtatccaaga ctttttgcac
     3241 atttggattt tcttcataat agctaatatc ttgcattgct tgttgaaaag ctcgagaaac
     3301 ctgaggatat gctacaacaa ctgggcgagc atgagctgtt tttgaatttt gttccatcaa
     3361 gaaacgcatt ggttcggata ctttatcttt gatattttca attgtagatt tacgaattgg
     3421 aaggaccgaa ttccccaagc taataatttc acttgattct gtatttgtag caaatttaac
     3481 aaattcagat gcggcctctt ttttatcaga ttttgtcgtc acagctaatt gccaactacc
     3541 tgaaggggat actaattttt tcgtcttact agatactggg taaggaagga taccaaaatc
     3601 aatatctttg tagtttgtat tcatgtcagc aatcgtccaa gaaccactca aaagcattgg
     3661 atactctcct gtttcaaaac ctttttcgac tggactaaca gttgtatagc cttcttttac
     3721 aagattttga atgaattgaa ctgcttctac actctctttg gagttgaagt atccttctgc
     3781 ctttgttcca tcttcgttta cgacagaacc attatttgac caaatcaacg gcatataagc
     3841 atatggcaac atttcatcgt ttgaattaat acgaaaatca attgttggtt tgttataatg
     3901 atctttcaat tttttagcaa tcgtattaaa ttcgtcccat gtccatggct tttctagcgt
     3961 tggaagctct gattccgcaa ttccggcctc tttgaacatt tttttattgt aataaacacc
     4021 aacattcgat tcagaaaatc caaatgcata gaatttccca ttataagttc cctgttgttt
     4081 aatactgtcc aaaacatcat ccatattatt atcttttaga taatcatcta gcggagtaat
     4141 tactttagat tttgcataag ctgccgtatt tggtccatca agggtaataa catctggaag
     4201 actattagtc gtaatagcag cattaacctt gtcttcatat cctccaccac taccactacg
     4261 aggaatatac tcagttacaa ccttgtactt actttttcct gattgattaa agttatcaac
     4321 aactttttgc caagcttttc cttcatttgt ttcgtcagag aattgtaccc agactttaat
     4381 atcatttgaa gaactcgctt gttttgagtt agttcctcca ctacaacctg caagtatagc
     4441 taacgatagc cccgcaacaa cagataacat tgtaccttta cgcatcattt tcctcctttt
     4501 tgaaacgttt cattttttat ttatttttta aacaagcttc tagcctattt ttgaaacgtt
     4561 tcatttgttg attatattat aacagcgctt tcattaattg tcaagcgctt tttaaatttt
     4621 ttttgttgtt ttatctcccc aaaaatatgt gggaattacg attcgttttt ctagaatctc
     4681 ttctcgctta atcattttca gtatcattgc aacagattct tttgccatca taccaatatc
     4741 ttgaactatt gtagacacta gataagattg atcgacagaa gtttttaaac catcaaaccc
     4801 aattatctgg taatcatcag gtgctatttt ccccagttct ttcataacac taataactct
     4861 cagagccatc atatcattta ttgtaaatat accatcaatt tctttatgag attgcaaaaa
     4921 aattcttatc tgatcttcag gatttattaa aggttctttc atttcaaaat tatagacatc
     4981 tactcctaat tccttagctt tttctctgaa tcctttactt ctgagtatag tctcattctc
     5041 atacatatta attgaaccaa taaaagcaag gtgcttatta tcccttctaa ccagttcctc
     5101 tgctgcagtt tgtcctcctt tgtaatttgc tgaagtaaca tagcatacat tttccgaaaa
     5161 atgtctatct atacttacaa acggtaaatc agataaaata tatttgtcaa tatcagaata
     5221 tgtaatacca ataattccat ccactttatt ttgtttcaac atttcgatat attcgatttc
     5281 attttgtgaa tcgctatcag cgttacaaat aaataattta taattatatt ttaataactc
     5341 tttctcaaca tgataggcaa actccgaaaa aaatggatgc catatgctcg gaataatcaa
     5401 agcgatagtt tctgttctat tctttttcat acctcgagca taattatcag ggatatagtc
     5461 caatgttttt atagcccttt gaactttcct taaagttact tctttaatgc ctttttcttt
     5521 attaattaca cgtgaaacag ttccaacact aactcctgct tctaaagcaa catctttcat
     5581 ggtaattgat tttctttgtt ctaccatatt atcaactcct ttcaatatat agtatcatgc
     5641 aaatgctttt taagcaacta tttctcaatc atttttggcc agatcattta tcccatcatg
     5701 aataaaatca ctccaattag cttttgaaaa tacttcaatt ttcatgtgta aacatctaca
     5761 taaaacagga aaagccttgg tttcatggct tttttcatat cttctacaaa aaaagcaaga
     5821 gttttagagg gctataaatc tagatgtaca tttttcttaa atgattgaag gtcttttctt
     5881 aacaaaaaca ccctaaaaat tagacttttt ctgtctaact tttgaggtac agttcaaacg
     5941 cgaaatagcg tttttttgtt atttttggtt actcatctaa tcgaataaac atcatggcat
     6001 ttaacaagta tatgagtgag accgtgttta tattatttga atagatgagt ctcttatttt
     6061 caataggagg aataataaaa ttagaaataa tgatatcata aggtgaatct tctaaagatt
     6121 cctttgataa ttctaattca gtccaaactt ccagttcaaa attattgcta cagtaataag
     6181 aaagtgtctc tgcaacgaat tttgcatgat actgatcaaa attactcata accaaaacct
     6241 ttagtttagg ctgattttgt agcaaattaa tcaccaaatg tttggtatga gtgatgaagg
     6301 tataagatag atgatttacc atcattgaac tagaacaaac ctcaagagtc tctaaatagt
     6361 gagaaagctc tttttttaca tctgaaacaa attttggaaa aatattttga aagttcctga
     6421 ttgtattccc tttttgatca aataaaataa actcagtaaa caactcttga cgatacagat
     6481 gtgcggtatt atgcagatgc caaatcagat tatccttatt ctcaatttca atctgatact
     6541 tgactgaaat ctgatcaata aaatcactca atagatggta agatttttca acataactat
     6601 ccttttttac gcatttcata aagagacttt catctatgaa aaacattttt tgaaagtaag
     6661 acacaaataa ttggcaaaca acttcttcat ctaaagagat attgtattct gattcaaaac
     6721 tctgagcaac accttctatt ccttctgcct gcattaaaaa atccaaactt tggtcgttaa
     6781 aagaatcttt atctacttcc ataaaatgac caaactttat tctatatagg ttcgtaacta
     6841 ggagcaactt tagcattcta tgcgttgaca aattcattgg aaagcttgtt tccttataaa
     6901 ccaattctaa caattgagat agtggctctg atgaaaaatt ttcaaacggc cattctagga
     6961 aataatattt ttctgaaaaa tattgtgcaa aaaagtaacg aatgtctctc tcgtttccaa
     7021 tgatttgaac aggggtcaga ctgacttcaa attgaaattg ccttttaatc actttattga
     7081 tttggctaat aatacgatag agcgaagatg aactgatata aaattcttta caaatactct
     7141 cagcttgaca accttcatta aagaagatga attctaaaat cgaaaaatga gttgaatgtt
     7201 taaagaaatg atggtaaacc atttcaatat cactatcatc ggtattaata atgcgtatac
     7261 cattagtaga agaatgaaaa atcaagtcag gaaaagcaga tttaacatgg gatagatcat
     7321 ctttgactgc acgttctgta caatttaata actctgctag ttcagaacga tgaaaccaac
     7381 gtttatgttc aaataataat tctaataatt ctaattgcct atgacttttt ttagataata
     7441 aatctctcat
//
