LOCUS       NC_008618               6814 bp    DNA     linear   CON 01-AUG-2019
DEFINITION  Bifidobacterium adolescentis ATCC 15703 DNA, complete genome.
ACCESSION   NC_008618
VERSION     NC_008618.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00061080
            Assembly: GCF_000010425.1
KEYWORDS    RefSeq.
SOURCE      Bifidobacterium adolescentis ATCC 15703
  ORGANISM  Bifidobacterium adolescentis ATCC 15703
            Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae;
            Bifidobacterium.
REFERENCE   1
  AUTHORS   Suzuki,T., Tsuda,Y., Kanou,N., Inoue,T., Kumazaki,K., Nagano,S.,
            Hirai,S., Tanaka,K. and Watanabe,K.
  TITLE     Bifidobacterium adolescentis complete genome sequence
  JOURNAL   Published Only in Database (2006)
REFERENCE   2  (bases 1 to 6814)
  AUTHORS   Suzuki,T., Tsuda,Y., Kanou,N., Inoue,T., Kumazaki,K., Nagano,S.,
            Hirai,S., Tanaka,K. and Watanabe,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-DEC-2006) Contact:Tohru Suzuki Gifu University, Life
            Science Research Center; 1-1 Yanagido, Gifu, Gifu 501-1193, Japan
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 07/29/2019 20:29:45
            Annotation Pipeline               :: NCBI Prokaryotic Genome
            Annotation Method                 :: Best-placed reference protein
            Annotation Software revision      :: 4.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
            Genes (total)                     :: 1,755
            CDSs (total)                      :: 1,682
            Genes (coding)                    :: 1,619
            CDSs (with protein)               :: 1,619
            Genes (RNA)                       :: 73
            rRNAs                             :: 6, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 54
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 63
            CDSs (without protein)            :: 63
            Pseudo Genes (ambiguous residues) :: 0 of 63
            Pseudo Genes (frameshifted)       :: 29 of 63
            Pseudo Genes (incomplete)         :: 42 of 63
            Pseudo Genes (internal stop)      :: 10 of 63
            Pseudo Genes (multiple problems)  :: 16 of 63
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence was derived from
            AP009256.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Annotation Pipeline (PGAP)
            set; GeneMarkS-2+
            repeat_region
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..6814
                     /organism="Bifidobacterium adolescentis ATCC 15703"
                     /mol_type="genomic DNA"
                     /strain="ATCC 15703"
                     /type_material="type strain of Bifidobacterium
                     adolescentis"
                     /db_xref="taxon:367928"
     gene            complement(1..1527)
                     /locus_tag="BAD_RS08450"
                     /old_locus_tag="BAD_1604"
                     /db_xref="GeneID:4556274"
     CDS             complement(1..1527)
                     /locus_tag="BAD_RS08450"
                     /old_locus_tag="BAD_1604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003806584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gnl|TC-DB|Q9X761|2.A.2.2.3"
                     /protein_id="WP_011743896.1"
                     /db_xref="GeneID:4556274"
                     /translation="MSNETTTADGGVRKKGKLGQRIAYACGNLGQAAFYNAMSTYFIVY
                     VTGCLFSGVDKALAAKLIGVITSLVVIIRIAEIFIDPLLGNLIDNTNTKWGRFRPWQFF
                     GGLISAVLLAVIFSGMFGLVNVNTTLFIVLFVITFVVLDVFYSLRDISYWGMIPALSSD
                     SHERSTYTALGSFTGSIGYNGITVVVIPIVSYFTWTLTGAKGEGQAGWTSFGIIVGLLG
                     ILTAWTVAFGTKESTNALRAKAQKNGNPLEAFKALFQNDQLLWVALSYLLYAIANVATT
                     GVLLFLFKFVLDNQAAYSMTGVIALVSGLIMAPLYPILNKRIPRRVLYIVGMTSMIVAY
                     ILLGLFSTNMTVVFIALVLFYIPGTLIQMTAILSLTDSIEYGQLKNGKRNEAVTLSVRP
                     MLDKIGGALSNGITGFIAVAAGMTGNATAADMTPSNIHTFEICAFYVPLILIVLSLLVF
                     MFKVKIDEKMHAKIVKELEAKLASGEIVDDEAQTAETVEAIDEEAKTLTE"
     gene            1853..4924
                     /locus_tag="BAD_RS08455"
                     /old_locus_tag="BAD_1605"
                     /db_xref="GeneID:4557038"
     CDS             1853..4924
                     /locus_tag="BAD_RS08455"
                     /old_locus_tag="BAD_1605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_696150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GH2"
                     /protein_id="WP_011743897.1"
                     /db_xref="GeneID:4557038"
                     /translation="MANETRIEHASETWLADSTVFEVNRVPAHSDHKCYAHDPQTNEWS
                     DLRQSLDGEWRVEVVQASDIEFNEEPFVRENFDDSAFERIQVPGHLQMAGLMNNKYVNI
                     QYPWDGHENPAEPNIPENNHVALYRKTFTMANRLADTKNAGGTVSIVFHGMATAIYVWV
                     NGMFVGYGEDGFTPNEFDITEMLHDGENVVAVACYEYSSASWLEDQDFWRLHGLFRSVE
                     LAAQPHVHIENMQIESDWDPESGSASLDAALTVRNAADAATISATLKDSDGNVVWETAN
                     CADPDTSISTGLLNGIRPWSAEDPVLYEFEVTVIDHAGNIAEVAVQKVGFRRFRIEDGI
                     MTINGKRIVFKGADRHEFDPKRGRAITEQDMIDDVVFCKRHNLNAIRTSHYPNQERWYE
                     LCDEYGIYLIDETNLETHGSWCLPGDVLTEETAVPGSKAHWEGACVDRVNSMVRRDYNH
                     PSVLIWSLGNESYTGDVFRAMYKRVHDIDPNRPVHYEGVTHNRDYNDVTDIETRMYAHA
                     DAIEEYLKNDPQKPYISCEYMHAMGNSCGNMDEYTALERYPKYQGGFIWDFIDQAIYAT
                     QPDGTTSLRYGGDFGDRPSDYEFSGNGLVFADRKPTPKAQEVKQLYSNVHIDVAEDSVT
                     IKNDNLFTSTGEYTFVLRVLADGEPVWQSERRFDVPAGSTEKLDVDWPLDLYRDGASEL
                     VLEVSQRLAKATNWAVAGYELAFGQTVVAGSKKASAPVKPVDGIVTVGRWNVGVQGSGR
                     EVLLSRTQGGLVSYTFNNREFVLRRPAVTTFRALTDNDRGAGHGFERAQWLGAGRYARC
                     IGNEIEQIDENTVKASYTYELATPQRTKVTVSYTADTTGRVNLHVEYPGEPGDLPTIPA
                     FGIEWTLPVQYSNLRFFGAGPEETYQDRKHAKLGVWSTDAFKDHAPYLMPQETGNHEDV
                     RWAEITDEKGHGLRISRAEGAEPFAMSLQPYSSFMLEEAQHQDELPAPKHMFLRVLAEQ
                     MGVGGDDSWMSPVHPQYHIPADQPISLDVDLDLI"
     gene            complement(5219..6238)
                     /locus_tag="BAD_RS08460"
                     /old_locus_tag="BAD_1606"
                     /db_xref="GeneID:4557039"
     CDS             complement(5219..6238)
                     /locus_tag="BAD_RS08460"
                     /old_locus_tag="BAD_1606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011743898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DBD-Pfam|LacI,DBD-SUPERFAMILY|0044558"
                     /protein_id="WP_011743898.1"
                     /db_xref="GeneID:4557039"
                     /translation="MATIREIAEKAGFSQATVSRILNDDPSFSVKEATRQKILSTSIEM
                     GYENVPRYQRVTIPQDIALLNNSIHDKGLQDAYFDELEVSLRRHAKDERMRVTEYNDVK
                     SLMKDASKYAGFISIGPAPFKRNMLKRLHAVLPHGVFIDINPAPSLFDSVQPDLEQTIL
                     DALDELMDAGNKRIGFIGGFGNIMGDHEYPEDPRAFAFRNWTVRLGLDVDGLVFDEGPF
                     TVENGRALGERFVAECGDRLPDALIVAADPIAVGVLQAFAASGILVPRDMRLVSINNQE
                     IANYTSPTLSSYDINKDELAKAAVFMLSEAISMGRSVNQHMRISTKLVARDSFTPKAR"
     gene            6320..6814
                     /locus_tag="BAD_RS08465"
                     /old_locus_tag="BAD_1607"
                     /db_xref="GeneID:4557040"
     CDS             6320..6814
                     /locus_tag="BAD_RS08465"
                     /old_locus_tag="BAD_1607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003806587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DBD-Pfam|HTH_AraC,DBD-Pfam|HTH_AraC,DBD-Pfam|HTH_
                     AraC,DBD-SUPERFAMILY|0036286,DBD-SUPERFAMILY|0035607"
                     /protein_id="WP_003806587.1"
                     /db_xref="GeneID:4557040"
                     /translation="MSEISFSMKMDWLQCIGQSDEAIRGFKLNMLLYELLSLLYSRFVS
                     GVRRPELVRSGRNITMQIIGYMTSHRKQHLEATDVAREFGYGREHFCRLFRKATGKTFK
                     EFLTDLRLDDACRKLSGSSASIASIARECGFPDTRALQTAVQRKYGIRAQEYRERYENR
                     N"
ORIGIN
        1 ttattcggtc agggttttgg cctcctcatc gatggcttcg acggtctcgg cggtctgagc
       61 ttcgtcatcg acgatttcgc cggaggcaag cttggcttcg agctctttga caatcttagc
      121 atgcatcttc tcgtcgatct tgaccttgaa catgaacacc agcaggctga gcacgatcag
      181 aataagcggc acatagaagg cgcagatttc gaaggtgtgg atgttggagg gggtcatatc
      241 ggccgcggtg gcgttgccgg tcatgccagc agcgacggcg atgaagccgg tgatgccgtt
      301 ggacagcgcg ccgccaatct tatcaagcat cggacgtacg gacagggtga cggcctcgtt
      361 gcgcttgccg ttcttcagct ggccgtattc gatggagtcg gtcagggaga ggatggcggt
      421 catctggatg agggtgcccg ggatgtagaa gagcacgagg gcgatgaaca ccacggtcat
      481 gttggtggag aagagaccca gcaggatgta ggccacgatc atggaggtca tgccgacgat
      541 gtacaggact cggcgtggga tgcgcttgtt caggatcggg tacagcggag ccatgatgag
      601 gcctgacacc aaggcgatga cgccggtcat ggagtaggcg gcctggttgt cgagcacgaa
      661 cttgaacagg aagaggagta cgccggtggt ggccacgttg gcgatggcgt acagcaggta
      721 ggacagggcg acccacagga gctggtcgtt ctggaacagg gccttgaatg cctcgagcgg
      781 gttgccgttc ttctgggcct tggcgcgcag tgcgttggtg ctttccttgg tgccgaacgc
      841 gacggtccat gcggtcagga tgccgaggag tccgacgatg atgccgaagg aggtccagcc
      901 ggcctgtcct tcgcccttgg caccggtgag cgtccaagtg aagtagctga cgatcgggat
      961 gaccacgacg gtgatgccgt tgtagccgat ggagccggtg aaggagccga gggcggtgta
     1021 ggtggagcgc tcgtgggagt cggaggacag cgccgggatc atgccccagt aggagatgtc
     1081 acgcagggag tagaacacgt cgagcacgac gaaggtgatg acgaacagca cgatgaacag
     1141 cgtggtgttg acgttcacca ggccgaacat gccgctgaag atcacggcga gcaggacggc
     1201 ggagatcagg ccgccgaaga actgccatgg gcggaagcgt ccccacttgg tgttggtgtt
     1261 gtcgatgagg ttgcccagca gcgggtcgat gaagatctcg gcgatacgga tgatcaccac
     1321 gaggctggtg atgacaccga taagcttggc cgcaagcgcc ttgtcaacgc ccgagaacag
     1381 gcagccggtg acatagacga tgaaatatgt gctcatcgcg ttgtagaagg cggcctgacc
     1441 gaggttgccg caggcgtagg cgatacgctg gccgagcttg cccttcttgc ggacgccacc
     1501 gtccgcggtt gtcgtttcgt tgctcatttt ttcttctcct taagattccg gagttgaaga
     1561 tcacccattg atcttgcatg tcgagtatac gctctttaca agaaaaagta aaaaccatta
     1621 gcaaaatata gggtttggcg gcgtgttgaa ttaggtaaac cgtgtaccag cactgtcata
     1681 tcggtatcaa tcagatgcct gatacgttac aacatatacc gctgatacga aggaattaag
     1741 acgtcaagta aaaccgattt gctttttttg taaacaacat ttattatctg gtaaaggaag
     1801 ttcatcttct ctccatcatt cacaaagatg taatgaacga aagcaggaaa acatggcaaa
     1861 cgaaacccgc atcgaacacg catccgagac ctggctcgcc gattcgaccg tattcgaggt
     1921 caaccgcgtc ccggcgcatt ccgaccacaa atgctacgcg cacgatccgc agaccaacga
     1981 atggtccgat ctgaggcaga gcctcgacgg cgaatggagg gtcgaggtcg ttcaggcatc
     2041 cgacatcgaa ttcaacgagg agcccttcgt aagggagaac ttcgacgatt ccgccttcga
     2101 acgcatccag gttcccggac acctgcagat ggcgggattg atgaacaaca agtacgtgaa
     2161 cattcaatac ccgtgggatg gccacgagaa tccggcggaa ccgaatattc cggagaacaa
     2221 ccatgtcgcc ctctaccgta agaccttcac gatggcgaac cgtctggccg acaccaagaa
     2281 cgccggcgga accgtctcca tcgtgttcca cggcatggcc accgcaatct acgtgtgggt
     2341 caacggcatg ttcgtcggct atggcgagga cggcttcacc cccaacgaat tcgacatcac
     2401 cgagatgctg cacgacggcg agaacgtcgt tgccgtcgca tgctacgaat actccagcgc
     2461 ctcatggctc gaggaccagg acttctggcg tctgcacgga ctgttccgct cggtcgagct
     2521 ggccgcgcag ccgcatgtgc atatcgagaa catgcagatc gaatccgatt gggatccgga
     2581 gtccggcagc gcctctttgg acgcggcgct caccgtgcgc aacgcagccg acgcggccac
     2641 gatctcggcg acgttgaagg attccgatgg taacgtcgtc tgggagaccg cgaactgcgc
     2701 tgaccccgat acctccatct ccaccggatt gttgaacggc atccgcccgt ggagcgcgga
     2761 ggatccggtc ctctacgagt tcgaggtcac ggtcatcgac catgccggca acatcgccga
     2821 ggtcgccgtc cagaaggtcg gattccgccg cttccgcatc gaggacggca tcatgacgat
     2881 taatggcaag cgcatcgtat tcaagggcgc cgaccgccac gagttcgatc ccaagcgcgg
     2941 acgcgcgatc accgagcagg acatgatcga cgatgtggtc ttctgcaaga ggcacaacct
     3001 caacgccatc aggacctccc actatccgaa ccaggagcgc tggtacgagc tgtgcgacga
     3061 gtacggcatc tacctgatcg acgagaccaa cctcgaaacc catggcagct ggtgcctgcc
     3121 cggtgacgtc ctcaccgagg agaccgccgt cccgggaagc aaggcgcatt gggagggcgc
     3181 gtgcgtcgac cgtgtcaaca gcatggtgcg ccgcgactac aaccatccga gcgtcctgat
     3241 ctggtctctc ggcaacgaat cctacacggg cgacgtgttc cgcgccatgt acaagcgcgt
     3301 gcacgacatc gacccgaacc gtcccgtgca ctatgagggc gtgacccaca accgcgacta
     3361 caacgacgtg accgacatcg agacccgcat gtatgcgcac gccgacgcca tcgaggaata
     3421 cctgaagaat gatccgcaga agccttacat ctcctgcgag tacatgcacg ccatgggcaa
     3481 ttcgtgcggc aacatggacg aatacaccgc gctcgaacgc tatccgaagt accagggcgg
     3541 cttcatctgg gacttcatcg accaggcgat ctacgccacc cagcccgatg gaaccacgag
     3601 ccttcgctat ggcggcgact tcggcgacag gccgagcgac tacgagttct ccggcaacgg
     3661 cctggtgttt gcggaccgta agcccacgcc gaaggcccag gaggtcaagc agctgtattc
     3721 caacgtgcat atcgatgtcg ccgaggattc cgtgaccatc aagaacgata atctgttcac
     3781 ctccactggc gaatacacgt tcgtgttgcg tgtccttgcg gatggcgaac cggtatggca
     3841 gtccgaacgc cgtttcgacg tgccggccgg ttcgacggag aagctcgatg tcgactggcc
     3901 gttggatctg taccgcgacg gcgcgtccga actggtgctg gaggtatccc agcgtctcgc
     3961 caaggcgacc aattgggcgg tagccggcta tgagctggca ttcggccaga ccgtcgtcgc
     4021 cggctccaag aaggcctctg ctccggtgaa gccggtcgac ggcatcgtca ccgttggccg
     4081 ttggaacgtc ggcgtgcagg gatccggccg cgaggtactg ctttcccgca cccaaggcgg
     4141 actggtctcc tacacgttca acaatcgaga attcgtgctg cgccgtccgg cggtcaccac
     4201 gttccgcgcg ctgaccgaca acgatcgcgg cgcaggccac ggcttcgaac gcgcccagtg
     4261 gctgggagca ggccgttacg cccgctgcat cggcaacgag atcgaacaga tcgacgagaa
     4321 caccgtcaag gcctcctaca cgtacgagct cgccaccccg cagcgcacca aggtgaccgt
     4381 cagctacacc gccgacacca ccggacgagt gaatctgcac gtcgaatacc cgggcgagcc
     4441 gggcgacctg cccaccatcc ccgcgttcgg catcgaatgg acccttccgg tccagtactc
     4501 gaacctgcgt ttcttcggcg ctggtccgga ggagacctac caggatcgca agcatgccaa
     4561 gctcggtgtg tggagcaccg acgcgttcaa ggaccacgcc ccgtatctca tgccgcagga
     4621 aaccggcaac catgaggacg tgcgttgggc cgagatcacg gacgagaagg gccatggcct
     4681 tcgcataagc cgcgccgaag gcgccgaacc gttcgcgatg agcctgcagc cgtactccag
     4741 cttcatgctt gaggaagccc agcatcagga cgagctcccc gccccgaagc acatgttcct
     4801 gcgtgtgctt gccgagcaga tgggtgtcgg aggagatgac tcctggatgt ccccggtcca
     4861 cccccagtac catatcccgg cggaccagcc gatcagcctc gacgtcgatc tcgacctgat
     4921 ctgaccggcg cgccccggcg gaaaccggga cttggctttc ctttcgccat acgcggaaac
     4981 gtatggcgaa aggacggtgc cgtcgtcaag ggtggacctt gacatcaaac cggagacggc
     5041 gccttgaaag ggtacggcac gtcttccatg ttttccccgt gccgtgccct cgtttccata
     5101 tcgggaacag ggcttgacag actttccttc gaaaacacct cacagatgta aaagggttcg
     5161 gtcctcgttg gcacgtatta agcgtgtcaa cgaggaccga accctttctt cttaaaccct
     5221 acctagcttt cggggtgaaa ctgtcccggg cgaccagctt ggttgaaatc ctcatatgct
     5281 ggttgacgga gcgccccatg gaaatggcct ccgacagcat gaataccgcg gccttggcca
     5341 attcgtcctt gttgatgtca tacgacgaaa gcgtcggcga agtgtaattc gcgatctcct
     5401 ggttgttgat gctcaccagt cgcatgtcgc gtggaaccag aatgccggac gccgcgaacg
     5461 cctgcaagac gcctacggcg atggggtccg ccgccacaat cagagcatcc gggagcctgt
     5521 cgccacattc ggccacgaac ctctctccca aggcacggcc gttctccacg gtgaaaggcc
     5581 cctcatcgaa caccaggccg tcgacgtcaa gaccgagacg gacggtccag ttgcggaacg
     5641 cgaacgcacg cggatcctcg ggatactcat ggtcgcccat gatgttgccg aaccctccga
     5701 tgaacccgat tcgcttgttg ccggcgtcca tcaattcgtc caaggcgtcc agaatggtct
     5761 gctccagatc cggctgcacc gaatcgaaca ggctcggcgc gggattgatg tcgatgaaca
     5821 ctccatgcgg aaggaccgcg tgcagacgct tcaacatgtt ccttttgaac ggcgccggac
     5881 ctattgagat gaatccggcg tatttggacg cgtccttcat cagggatttg acatcgttgt
     5941 attccgtcac tctcatgcgc tcgtccttgg catggcgacg taatgaaact tcaagctcgt
     6001 caaaataggc gtcctgaagc cccttgtcgt ggatggagtt gttcagcaac gcgatgtctt
     6061 gcggaatggt gacacgttgg tagcggggga cgttctcgta ccccatctca atgctggtgc
     6121 tcagaatctt ctgacgggtg gcctccttca ccgagaacga ggggtcgtca ttgagtattc
     6181 tcgatacggt cgcctgggag aagcccgcct tttccgcgat ctccctgatc gtggccatgg
     6241 aaacctacct ccttggaaat tcagcaacta aacgtgttta gtaacgagtt tatcatgttt
     6301 gaaagcgtaa ttgccatcaa tgtcggaaat ttcgttttca atgaaaatgg attggctaca
     6361 atgtattgga cagtccgatg aggccattcg tggattcaag ctcaatatgc tgctgtacga
     6421 attgctatcg ctgctgtatt cgaggttcgt ttccggggta cggcggccgg aattggtcag
     6481 atccggaaga aacatcacca tgcagatcat cggatacatg acatcgcacc gcaaacagca
     6541 tctcgaagcg accgacgtcg cacgggaatt tggatacggc agggaacatt tctgccgcct
     6601 attccgcaag gcgaccggca aaacgttcaa agaatttctg accgacctgc gattggacga
     6661 cgcctgcaga aaactgtcag gttcctctgc gtcgatagcc agcatcgcaa gggaatgcgg
     6721 tttccccgat acgcgcgcgc tgcagacggc cgtgcaacgc aaatacggca tacgcgcgca
     6781 ggaatatcgc gaacgatacg aaaatcgaaa ctaa
//
