LOCUS       CP028460                6979 bp    DNA     linear   BCT 22-OCT-2018
DEFINITION  Bifidobacterium animalis subsp. animalis strain CNCM I-4602
            chromosome, complete genome.
ACCESSION   CP028460
VERSION     CP028460.1
DBLINK      BioProject: PRJNA445301
            BioSample: SAMN08774047
KEYWORDS    .
SOURCE      Bifidobacterium animalis subsp. animalis
  ORGANISM  Bifidobacterium animalis subsp. animalis
            Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae;
            Bifidobacterium.
REFERENCE   1  (bases 1 to 6979)
  AUTHORS   Egan,M., Bottacini,F., O'Connell Motherway,M., Casey,P.G.,
            Morrissey,R., Melga,S., Faurie,J.-M., Chervaux,C., Smokvina,T. and
            van Sinderen,D.
  TITLE     Staying alive: Growth and survival of Bifidobacterium animalis
            subsp. animalis under in vitro and in vivo conditions
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6979)
  AUTHORS   van Sinderen,D., Chervaux,C. and Smokvina,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-APR-2018) School of Microbiology, University College
            Cork, Western Road, Cork ND, Ireland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method        :: SMRT Analysis v. 2.3
            Expected Final Version :: yes
            Genome Coverage        :: 400.0x
            Sequencing Technology  :: Pacbio SMRT sequencing
            ##Genome-Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..6979
                     /organism="Bifidobacterium animalis subsp. animalis"
                     /mol_type="genomic DNA"
                     /strain="CNCM I-4602"
                     /host="Homo sapiens"
                     /sub_species="animalis"
                     /db_xref="taxon:302912"
                     /country="France"
                     /collection_date="01-Oct-2014"
     gene            complement(1..837)
                     /locus_tag="CNCMI4602_1497"
     CDS             complement(1..837)
                     /locus_tag="CNCMI4602_1497"
                     /codon_start=1
                     /transl_table=11
                     /product="gnl|TC-DB|Q8NMV5|3.A.1.1.45"
                     /protein_id="AYN24330.1"
                     /translation="MQEKPKHGALWTIFFSMISIAWVFPIFLVLLNSFKGKAYISRNAF
                     AFPVGDTFVGLENYKRGIESTNFFASFGWTVLITVGSVCLILVCTSMCAWWIVRVNNWA
                     AKLLYTLFLFNMIVPFQMVMFTLSKLADMLKLNTPWGLCFIYLGFGAGLAVFIFTGVVK
                     GIPQSLEESAMIDGASVPRIFFQVVVPIMKPSIVSVAILEAMWVWNDYLLPYLTLDLGK
                     YKTISVAVQYLKGGYGSVDMGAMMACLVLAIIPIIVFYLICQKYIVKGVMAGAVKG"
     gene            complement(837..1691)
                     /locus_tag="CNCMI4602_1498"
     CDS             complement(837..1691)
                     /locus_tag="CNCMI4602_1498"
                     /codon_start=1
                     /transl_table=11
                     /product="gnl|TC-DB|Q8NMV4|3.A.1.1.45"
                     /protein_id="AYN24331.1"
                     /translation="MISMAGKAIRRWWALFVLPTFVAFFIGFLVPFIYGIYLSFCSFTT
                     VTDAKFIGWQNYARAIKDKEFLHALGFSTLMTIVTTIVINVVAFAIAYLLTKSIRGSNL
                     FRSVFFMPNLIGGIILGYIWMLLLNGVLAHWERSLTYSAKYGFWGLVILVCWQQIGYMM
                     IIYIAGMQSLPTDVLEAAQVDGASGRQIMFRIIIPLMMPSITVCSFLTVTNGFKLYDQN
                     LALTNGAPQNMSEGLALNITRTFYGRIGWEGVGQAKAVLFFILVAIVALIQNKITTSKE
                     VDA"
     gene            2155..3165
                     /locus_tag="CNCMI4602_1499"
     CDS             2155..3165
                     /locus_tag="CNCMI4602_1499"
                     /codon_start=1
                     /transl_table=11
                     /product="STP|LacI,STP|Peripla_BP_3"
                     /protein_id="AYN24332.1"
                     /translation="MNASIQDVAKAAHVSISTVSRSFTRPELVSAATREKVLRIAEELN
                     FSTSRSAAALKTGRAMRVALLMSDHIRLWFSASVIEGLNQVLHAEGYDISIFQISSIEE
                     RRDFFEMLPVRRNADAVIVASFDADETEIAQLASANVPIIGINSVMPRELGFTAAVNID
                     DTQGSILAARHLINLGHRDIAYVRTNRDVSLHFSVQQRFDSFMECCAGSGISPTVIVAQ
                     EGPDRIRRVLTDLMSLERMPTAIACQEDGIAVPLIFQLERSGYEVPNDISVIGYDNSFY
                     ANDIGLTTIAQDPIEMAKMAAEMTVKLIEGEKPEHLFRMIPAELVVRSSTAKYIA"
     gene            complement(3515..4846)
                     /locus_tag="CNCMI4602_1501"
     CDS             complement(3515..4846)
                     /locus_tag="CNCMI4602_1501"
                     /codon_start=1
                     /transl_table=11
                     /product="gnl|TC-DB|Q8NMV3|3.A.1.1.45"
                     /protein_id="AYN24333.1"
                     /translation="MNRTVKATVGLVAIAAMSLTGLAACGGSSADDGKGKVYFLNFKPE
                     AADQWVALAKKYTDKTGVQVKVQTAASGTYEQTLKSELAKSDAPTIFQVNGPVGYQNWK
                     GYTADLKDTGIYNELNNKDIALKDGDKVVGIPYVMETYGIIYNKDLLKKYTELPGAKIK
                     DAKEINSFDKLKEVSDDMQAKKDQLGIKGAFTSAGFDSSSDWRFKTHLANIPLSYEFKE
                     DGVTTQPETIKGTYLPNFKNIFDLYLKDSTTAPSQLSSKTGDDANSEFALGEAAFYQNG
                     TWAWTDLQKAGMKADQVGMLPIYIGAKGEENQGLATGSENYLCVNAKASEADQKASKDF
                     LNWVVTSDEGIKALSEDMGFTTPFKTFDKVKSDNPLVEEAVEDSNSGKQQVAWNFTMMP
                     SEEWKNQLGQAMLAYAQGNGSWDDVQKAFVDNWKTEYGNAHANQ"
     gene            5204..6979
                     /locus_tag="CNCMI4602_1502"
     CDS             5204..6979
                     /locus_tag="CNCMI4602_1502"
                     /codon_start=1
                     /transl_table=11
                     /product="GH13_30"
                     /protein_id="AYN24334.1"
                     /translation="MTANNMHDDWWKQAVVYQVYPRSFRDANGDGLGDIAGITKQVPYL
                     KHLGVDAIWLSPFYPSELADGGYDVIDYRNVDPRLGTLEDFDELVTALHAHGMKIVVDI
                     VPNHTSNMHEWFQAALAAEPGSPERDRYIFREGRGEHGELPPNDWQSLFGGPAWQRVAD
                     GQWYLHIFTVEQPDLNWKNPEVHEDFKKTLRFWSDRGVDGFRIDVAHGLAKDLDSKPLA
                     EMDADCVFNTDNRDEDNPLWDRPEVHDIYREWNAVFNEYQPARFAVGEAWVIPEHQHLY
                     AREGELGQVFNFEFAKANWNAAAFKAAIEDGIRSAHDAESTTTWVMSNHDVVRHASRYG
                     LPQVPTTGYHELPNDWLLRDGTTYIEDRDLGTRRARAAILMELGLPGSVYVYQGEELGL
                     PEVANIPWDHLEDPIAFHTDHAGAQKGRDGCRVPLPWRADDEPRPADWNPLFGTGASFG
                     FSDAPADGSAPADPHLPQPLWYKQYAADKQMADDTSMFNLYRQAMQFRQEHLTPSDDTD
                     DITWLPGTDFNAHNAEVVAYTRPCTGEGDGTFACIVNFGPDPIDLPAGTVVLSSEPLDE
                     PHKLSADTAVWMLLP"
ORIGIN
        1 tcagcccttt acggcaccag ccatgacacc cttgacgatg tacttctggc agatgaggta
       61 gaacacgatg atcggaatga tcgcgagcac gaggcaggcc atcatcgcac ccatgtcgac
      121 ggagccatag ccgcccttca ggtactgcac agccaccgag atggtcttgt acttgcccag
      181 atcgagcgtc aggtatggca gcaggtagtc gttccacacc cacatggcct caaggatggc
      241 cacggagacg atggacggct tcatgatcgg cacgaccacc tggaagaaga tgcgcggcac
      301 cgaggcaccg tcgatcatgg cggactcctc cagcgactgc gggatgccct tgaccacgcc
      361 ggtgaaaatg aacaccgcca gaccggcgcc gaagcccagg tagatgaagc acaggcccca
      421 cggggtgttg agcttcagca tgtcggcgag cttcgacagc gtgaacatga ccatctggaa
      481 cggcacgatc atgttgaaca ggaacaacgt gtagagcagc ttggcagccc agttgttcac
      541 gcgcacgatc caccacgcac acatcgacgt gcacacgaga atgaggcaca ccgagccgac
      601 ggtgatgagc accgtccagc cgaagctggc gaagaagttc gtggattcaa tgccgcgctt
      661 gtagttctcg agtccgacga acgtgtcgcc caccgggaac gcgaaggcgt tgcgcgagat
      721 gtatgccttg cctttgaacg agttgagcag caccaggaag atggggaaca cccaggcaat
      781 ggagatcatc gagaagaaga tcgtccacaa tgctccgtgc tttggtttct cctgcatcac
      841 gcatcaacct ccttggaagt ggtgatcttg ttctggatga gcgccacaat ggccaccagg
      901 atgaagaaca ggacggcctt ggcctgaccc acaccctccc agccgatgcg gccatagaat
      961 gtacgggtga tgttgagcgc cagaccttcc gacatgttct gcggagcgcc gttggtgagc
     1021 gcgaggttct ggtcgtacag cttgaatccg ttggtcacgg tgaggaacga gcacacggtg
     1081 atgctcggca tcatgagcgg gatgatgatg cggaacatga tctggcgtcc gctggcgcca
     1141 tccacctgcg ctgcttcgag gacgtcagtg ggcagcgact gcatgccggc gatgtagatg
     1201 atcatcatgt agccgatctg ctgccagcac acgaggatca cgagacccca gaacccgtac
     1261 ttcgccgaat aggtgagcga acgctcccag tgggcgagca cgccgttgag cagcagcatc
     1321 cagatgtagc ccagaatgat gccgccgatg aggttcggca tgaagaacac cgagcggaac
     1381 agattggatc cacggatcga cttcgtcagc aaatacgcaa tggcgaacgc gacgacgttg
     1441 atcactatgg tggtcacgat cgtcatgagc gtggagaatc cgagcgcgtg caggaactct
     1501 ttgtctttaa tggcgcgcgc gtaattctgc cagccaatga acttggcgtc ggtgaccgtg
     1561 gtgaacgagc agaagctcag gtagatgccg tagatgaacg gcaccaggaa gccgatgaaa
     1621 aacgcgacga atgtcggcag cacgaacagt gcccaccatc gtctgattgc cttaccagcc
     1681 atgctgatca tagcatgcct actttctcct cttcgagttc gccctacacc actgtggggc
     1741 gatgccatgt tccgcgtcat ctgcagtcat tgcaaacgat tacagaaccg ttgtactcat
     1801 acgatagcaa catcatcgca ttctgtcaaa cgtttgcatt cccgccgtgt tgaatgtaat
     1861 gcttattttc acaaatcaca gatttttact gcatttccag cgtttttcgc aatcgcatag
     1921 cgtagacttg atattgaaaa cgtttgcgca aaatgtctaa gcaaatcgta gatcatgccg
     1981 ctggggccac cgacgtccgc ccatgtgcga ccgcgcaccg aaccgacagt cagccatatg
     2041 gaatgcaaca tgcttgcaat gcggtatgca tacacggcat cgacgggcgc aatcgtatgc
     2101 tgtatagagt cgagcgaagc gaggcgaccc gcttcccgaa caaggagggc agaggtgaac
     2161 gcaagcattc aggacgtggc caaagcggcc cacgtctcca tttccacggt ctcccggtca
     2221 ttcacacgac ccgagctggt gtcggcggcc acacgcgaga aagtgctgcg cattgccgag
     2281 gagctcaatt tctccacatc gcgctcggcg gccgcgctca aaaccggccg tgccatgcgc
     2341 gtcgcgctgc tcatgagcga ccatattcgc ctctggttct cggcctccgt gatcgagggc
     2401 ctcaatcagg tgcttcacgc cgaagggtat gacatctcca ttttccagat ttccagcatt
     2461 gaggagcgcc gcgatttctt cgagatgctg ccggtacgcc gcaatgccga cgccgtgatc
     2521 gtcgcctcct tcgacgccga tgagaccgag atcgcccagc tggcgagcgc caatgtgccg
     2581 atcatcggca tcaactcggt gatgccgcgc gaactcggat tcaccgcggc cgtgaacatc
     2641 gacgacacgc agggctccat tctcgccgcg cgccacctga tcaatctggg gcaccgcgac
     2701 atcgcctacg tgcgcacgaa ccgtgacgtc tcactgcact tctccgtgca gcagcgcttc
     2761 gattcgttca tggaatgctg cgcgggctca ggcatctccc ccacggtgat cgtggcgcag
     2821 gaaggccccg atcgcattcg ccgcgtactc accgatctca tgagcctcga gcgcatgccc
     2881 accgccattg cctgccagga ggacggcatt gcggtgccgc tcatcttcca gctcgagcgc
     2941 agcggatacg aggtgccgaa cgacatttcg gtgatcggct acgacaacag cttctacgca
     3001 aacgacatcg gcctgaccac cattgcacag gatccgatcg agatggcgaa gatggccgct
     3061 gaaatgaccg tcaagctcat cgagggcgaa aagcccgagc atctgttccg catgattccg
     3121 gcggaacttg tcgtgcgttc gagcaccgcc aagtacatcg cctgacgttt ctcaacaccc
     3181 cgcctcttac gcacagggag taagcgatcc aagataaacg gcgtgaaagg ggacagaatt
     3241 agcgtaattc tgtccccttt tacgcatctt tatgccccgc cagcgaacga tcccggcact
     3301 ttctgcgtaa aaagacaaaa ctgcaccgga atatgtcccc gtttacgcag ggaggaagct
     3361 ttttaatgca agagaaggaa cgtgtccata tacacaaagt ccatatacac aaagaggagg
     3421 gccaccccat tggggtggcc ctcctctcgc tagttattca gcatgggttc cacgtggaag
     3481 aagtggacgc ggaatccacg tccccattca gcgctcactg gttggcgtgg gcgttgccgt
     3541 actcggtctt ccagttgtcg acgaaggcct tctgcacgtc atcccagctg ccgttgccct
     3601 gcgcgtaggc gagcatggcc tggccgagct ggttcttcca ctcctccgac ggcatcatcg
     3661 tgaagttcca ggcgacctgc tgcttgccgg agttggagtc ctcgacggcc tcctcgacga
     3721 gcgggttgtc gctcttcacc ttgtcgaagg tcttgaacgg cgtggtgaag cccatgtctt
     3781 ccgacagcgc cttgatgccc tcatcggagg tgacgaccca gttcaggaag tccttcgagg
     3841 ccttctggtc ggcttcggag gccttcgcat tgacgcacag gtagttctcg gaaccggtgg
     3901 ccaggccttg gttctcctcg cccttggcgc cgatgtagat cgggagcata cccacctgat
     3961 ccgccttcat gccggccttc tgcaggtcgg tccatgccca ggtgccgttc tggtagaacg
     4021 cggcctcgcc gagtgcgaac tcggagttcg cgtcgtcacc ggtcttcgag ctcaactgcg
     4081 acggagcggt ggtggaatcc ttgaggtaca ggtcgaagat gttcttgaag ttcggcaggt
     4141 aggtgccctt gatcgtctcc ggctgcgtgg tcacaccgtc ctccttgaac tcataggaga
     4201 gcgggatatt cgccaggtgg gtcttgaaac gccagtcgga gctggagtcg aagcctgcgg
     4261 aggtgaaggc gcccttgatg ccgagctggt ccttcttggc ctgcatgtcg tcagagactt
     4321 ccttgagctt gtcgaaggag ttgatctcct tggcgtcctt gatcttggca cccggcagct
     4381 cggtgtactt cttgagcagg tccttgttgt agatgatgcc gtaggtctcc atgacgtacg
     4441 gaatgcccac gaccttgtcg ccgtccttca gcgcgatgtc cttgttgttg agctcgttgt
     4501 agatgccggt gtccttgaga tcggcggtgt agcccttcca gttctggtag cccaccgggc
     4561 cgttgacctg gaagatcgtc ggcgcatcgc tcttggcgag ctcggacttg agcgtctgct
     4621 cataggtgcc cgaggcggcg gtctgcacct tcacctgcac gccggtcttg tcggtgtact
     4681 tcttggcgag cgcgacccac tggtcggcgg cctccggctt gaagttcagg aagtagacct
     4741 tgcccttgcc gtcgtccgcg ctgcttccgc cacacgccgc caagccggtc agagacattg
     4801 cggcgatcgc cacgagaccc actgttgctt tcactgtgcg attcatcttc gaacctttcc
     4861 tcatcccact tcagtcacgc accggagtgg taccgaagta ttttcctgaa gccgcgccct
     4921 cgcgaacttc gtagcccctt cattatgcat cattctcaag cagattgcaa acgtgggcat
     4981 ctcgtttgcg cacaaattgt ggagattacc gcgcagatca gctcaaaaat actttatttt
     5041 caacactttt catcgcgaca cgcaatatga aagcgtttgc ggacaatctg caatatgggc
     5101 attttgccca gcattacgtc tccggacgac acggcggagc gaccgggcaa acggtattac
     5161 aatggttcct gaatttgttt ctaagaacaa gaaaagagct tccatgactg cgaacaatat
     5221 gcacgacgac tggtggaaac aagccgtcgt ctaccaggtg tacccgcgca gcttccgcga
     5281 cgcgaacggc gacggactcg gagacatcgc cggcatcacc aagcaggtgc cgtatctcaa
     5341 gcaccttggc gtggatgcca tctggctctc cccgttctac ccttccgagc ttgcagatgg
     5401 cggctatgac gtgatcgact accgcaacgt cgacccacgc ctgggcacgc ttgaggattt
     5461 cgacgaactc gtgacggcac tccacgcgca tggcatgaag atcgtcgtcg acatcgtgcc
     5521 gaaccacacc tcgaacatgc acgagtggtt ccaggctgca ctggccgcgg agcccggctc
     5581 gccggaacgc gaccgctaca tcttccgtga agggcgcggt gaacacggcg aactgccgcc
     5641 aaacgactgg cagtcgctgt tcgggggccc ggcctggcaa cgcgtggccg acggccaatg
     5701 gtatttgcac atcttcacag tggaacagcc ggacctcaac tggaagaacc ccgaggtgca
     5761 tgaggacttc aagaagacac tgcgcttctg gtccgaccgc ggtgtggacg gattccgcat
     5821 cgacgtggcg catggcctcg ccaaggatct cgacagcaaa cccctcgccg agatggacgc
     5881 ggactgcgtg ttcaacaccg acaatcgcga tgaggacaac cctttgtggg accgccctga
     5941 agtgcacgac atctaccgcg aatggaacgc cgtgttcaac gaataccagc cggcacgctt
     6001 cgccgtcggc gaggcatggg tgattccgga gcaccagcac ctctacgcgc gcgaaggcga
     6061 gctcgggcag gtgttcaact tcgaattcgc caaggcgaac tggaatgcgg cggcgttcaa
     6121 ggcggccatc gaagacggca tccggtcggc acacgacgcg gaatcgacca ccacctgggt
     6181 gatgagcaac cacgatgtgg tgcgccacgc cagccgctac ggcctgccgc aggtgcccac
     6241 caccggctat cacgagctgc cgaatgactg gctgctgcgc gacggcacca catacatcga
     6301 ggaccgcgat ctcggcacac gacgcgcccg tgcggcgatc ctgatggaac tcggcctacc
     6361 gggctcggtg tacgtgtatc agggcgagga gctcggcctt cctgaagtgg cgaacattcc
     6421 gtgggatcat ctcgaggacc cgatcgcgtt ccacaccgac catgccggcg cgcagaaggg
     6481 ccgcgacggc tgccgcgtgc cgctgccatg gcgtgccgac gacgagcccc ggcctgcgga
     6541 ttggaacccg ctgttcggca ccggagcctc cttcggcttc tccgacgccc cggccgacgg
     6601 ttcggcgccg gccgatccgc atctgccgca gccgttgtgg tacaagcagt atgccgcaga
     6661 caagcagatg gccgacgaca cctcgatgtt caacctgtac cggcaggcga tgcaattccg
     6721 ccaggaacac ctgacgccga gcgacgacac cgacgacatc acatggctac ccggcaccga
     6781 tttcaacgcc cacaacgccg aagtggtcgc ctatacgcgc ccctgcacgg gtgagggcga
     6841 tggcaccttc gcgtgcatcg tcaacttcgg ccccgatccg atcgacctgc ccgcaggcac
     6901 ggtggttttg agctccgagc cgctcgacga accgcacaag ctgtctgccg acactgccgt
     6961 ctggatgctg ctcccatga
//
