LOCUS       CP028460                5228 bp    DNA     linear   BCT 22-OCT-2018
DEFINITION  Bifidobacterium animalis subsp. animalis strain CNCM I-4602
            chromosome, complete genome.
ACCESSION   CP028460
VERSION     CP028460.1
DBLINK      BioProject: PRJNA445301
            BioSample: SAMN08774047
KEYWORDS    .
SOURCE      Bifidobacterium animalis subsp. animalis
  ORGANISM  Bifidobacterium animalis subsp. animalis
            Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae;
            Bifidobacterium.
REFERENCE   1  (bases 1 to 5228)
  AUTHORS   Egan,M., Bottacini,F., O'Connell Motherway,M., Casey,P.G.,
            Morrissey,R., Melga,S., Faurie,J.-M., Chervaux,C., Smokvina,T. and
            van Sinderen,D.
  TITLE     Staying alive: Growth and survival of Bifidobacterium animalis
            subsp. animalis under in vitro and in vivo conditions
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5228)
  AUTHORS   van Sinderen,D., Chervaux,C. and Smokvina,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-APR-2018) School of Microbiology, University College
            Cork, Western Road, Cork ND, Ireland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method        :: SMRT Analysis v. 2.3
            Expected Final Version :: yes
            Genome Coverage        :: 400.0x
            Sequencing Technology  :: Pacbio SMRT sequencing
            ##Genome-Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..5228
                     /organism="Bifidobacterium animalis subsp. animalis"
                     /mol_type="genomic DNA"
                     /strain="CNCM I-4602"
                     /host="Homo sapiens"
                     /sub_species="animalis"
                     /db_xref="taxon:302912"
                     /country="France"
                     /collection_date="01-Oct-2014"
     gene            complement(1..1032)
                     /locus_tag="CNCMI4602_0135"
     CDS             complement(1..1032)
                     /locus_tag="CNCMI4602_0135"
                     /codon_start=1
                     /transl_table=11
                     /product="DBD-Pfam|LacI,DBD-SUPERFAMILY|0036955"
                     /protein_id="AYN23004.1"
                     /translation="MVGMRDVAKRAGVSVSSVSLVINGTGYVSRDMREKVEQAMRELDY
                     VPNELARNFYHGKTGIIGVIVPTIQHPFFATLTAHLQHEFAGRGLQTMLCSTADSANGE
                     AQYVDMLRRHSLDALVVAAHTTHDPQQYWRAIDRPVVAFDRNLGAGITQVSSDHVHGGE
                     LIAELLVRTGAHHVVMVGGPRAQFTDLGDRSTFPTVRYVQTLEDRLSQARIAHTYIESG
                     EVFDIAGVQRAVREAFDEHPDMDAFVGADLAAAFAVQEAVSRSIAVPGDVQIVAYDGTL
                     AADCAGMPLTTVAQDFGQIAHTIAACVEHGIEASPQRPDATDGDANTTIIPVTLHERAT
                     TRR"
     gene            1158..1856
                     /locus_tag="CNCMI4602_0136"
     CDS             1158..1856
                     /locus_tag="CNCMI4602_0136"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="AYN23005.1"
                     /translation="MACCSSASLCRIAYFGHWGVRFGGHSVPCGAFWPLRGVVRWSDCA
                     VVRRMADGDGGGEARGVLCRPLLAVLRRGARFGRRGVSFGGRIVLWCAEWPMKIVAGGE
                     LVGNWRGIGGRLGFPLLLWRSLRAGLRVLTVEGCCLSVESCDCTKNGRWMHRGALGEGV
                     THSQAHGNGRGRSEVRAEGATHSHSLPRACTGRTGGCGRRPWGEGVPVAAICARGGVVP
                     SWSTRFGRAR"
     gene            2038..3558
                     /locus_tag="CNCMI4602_0137"
     CDS             2038..3558
                     /locus_tag="CNCMI4602_0137"
                     /codon_start=1
                     /transl_table=11
                     /product="GH13_18|GH13"
                     /protein_id="AYN23006.1"
                     /translation="MKNKVQLITYADRLGDGNLASMTDILRTRFDGVYEGVHILPFFTP
                     FDGADAGFDPIDHTKVDARLGDWDDIAELAKTHDIMVDAIVNHMSWQSKQFQDVLANGE
                     DSEYYPMFLTMSSVFPDGATEEELAGIYRPRPGLPFTHYSFAGKTRLVWVTFTPQQVDI
                     DTDSAKGWEYLMSIFDQMSKSHVKYIRLDAVGYGAKEAGTSCFMTPKTFELISRLREEG
                     AKRGLEILIEVHSYYKKQVEIAAKVDRVYDFALPPLLLHSLFTGKVDALAHWTEIRPNN
                     AVTVLDTHDGIGVIDIGSDQLDRSLKGLVPDADVDNMVETIAKNTHGESKAATGAAASN
                     LDLYQVNSTYYSALGCNDQHYIAARAVQFFLPGVPQVYYVGALAGENDMELLKRTNVGR
                     DINRHYYTTSEIDKNLERPVVRALNALARFRNELPAFDGDFSYSVGNDESIAFSWNGFG
                     SSATLTFTPSKGMGVENPQSVATLVWTDSTGEHRTDDLIANPPVMQAS"
     gene            3615..5228
                     /locus_tag="CNCMI4602_0138"
     CDS             3615..5228
                     /locus_tag="CNCMI4602_0138"
                     /codon_start=1
                     /transl_table=11
                     /product="gnl|TC-DB|J9W1F3|2.A.1.2.93"
                     /protein_id="AYN23007.1"
                     /translation="MVDEQDTHGGSAPSTGSNGYIRPGIDDRPDFDKALSQKDKENISR
                     LTAPMPKKRAADSSVGDEQVQGTKLATDSQAVGSGMAALAAVDTAVPDEASAFMDMRDP
                     MVSADGHRPTRAELVRLGIGFTVSAVACAIPWVALSTVILPRVFELIDNSSKEAMLGLV
                     NSIGAIVALLANIIFGTLSDMTRSRFGKRTPWIVGGGIITGLAIGAIAFTRNEALIIFL
                     WCVAQMGYNMMLAPYVAVMSDRVPDKVRGTISGFYGAGIAVGQTLGSVVGAAFLRQGQS
                     GLLSAWMMGLGIFSLTGIFVVAMWPREKSSCFEEQSEHVTVKSVLLNFRPPRHAPDFYY
                     ALVGRTLMMGGYWMITTYQLYIAQDYIYAGDPNAKDKAATIIATMGVITLVVSLIAAVT
                     AGPITDRLGRRKLPVALASCLFAVGAAMPLFFRSPMGIYLFAAVAGLGYGVYNAIDQAL
                     NVAVLPNPKEAGKDLGILNLANTLSTVIGTAMTSLVVSIVKSSMHVSTTPAVAYAWVFG
                     VAIVIVLAAAALIMRIRNVK"
ORIGIN
        1 tcagcgacgg gtggtggcgc gctcgtgcag cgtcaccggg atgatcgtcg tgttggcatc
       61 gccgtccgtg gcatctgggc gttgcggcga agcctcgatc ccgtgttcca cgcacgcggc
      121 gatggtgtgt gcgatctgcc cgaaatcctg ggcgaccgtg gtgagcggca tgccggcgca
      181 atccgcggcg agcgtgccgt cgtaggcgac gatctgcaca tcgccgggca ctgcgatcga
      241 gcgcgagacc gcctcctgca cggcgaatgc ggcggcgagg tcggccccca cgaacgcatc
      301 catgtccggg tgttcgtcga acgcctcgcg cactgcccgc tgcacgccgg cgatgtcgaa
      361 cacctcgccc gactcgatgt acgtgtgcgc aatccgcgct tgggaaaggc ggtcttccaa
      421 cgtttgcaca taccggacgg tggggaaggt ggagcggtcg ccgaggtcgg tgaactgcgc
      481 gcgcgggcca cccaccatga ccacatggtg cgcgccggtg cgcacgagga gttcggcgat
      541 gagctcgccg ccatgcacgt ggtctgaact cacctgggtg attcccgccc ccagattgcg
      601 gtcgaaggcg accaccgggc ggtcgattgc gcgccaatac tgctgcgggt cgtgggtggt
      661 gtgcgcggcg acgaccagcg cgtccaggct gtgccgacgc aacatgtcga catactgcgc
      721 ctcgccgttc gcggagtcgg cggtggagca cagcatcgtc tgcagaccgc ggccggcgaa
      781 ctcgtgctgc aggtgcgcgg tgagcgtggc gaagaacggg tgctggatgg tgggcacgat
      841 gacgccgatg atgccggttt tgccgtggta gaaattgcgt gcgagctcgt tgggcacata
      901 gtcgagctcg cgcatggcct gctcgacctt ctcgcgcatg tcgcgtgaga catagccggt
      961 gccgttgatc accagcgaga cactgctcac cgagacgcct gcccgtttcg cgacgtcgcg
     1021 catgccgacc atgttcgcct cctcatttcc tgctccgtgt gttgccgtct gcggtatcga
     1081 accggtttga cgaccactat cgattgtatg tgcagatttc gtcctccggc aaccgcgttt
     1141 cggcagaggc cggcggtttg gcgtgctgct cctcggcctc tttgtgtcgg attgcatatt
     1201 tcggccattg gggagtgcgg tttggtggcc attctgtgcc gtgtggcgcg ttttggccgt
     1261 tgaggggcgt tgttcggtgg tcggattgtg ctgtcgtgcg cagaatggcc gacggggatg
     1321 gtggcggtga ggctcggggg gtgttgtgtc gtcccttgtt ggctgttctg cgccggggtg
     1381 cgcgttttgg ccgtcgggga gtgtcgttcg gtggccggat tgtgctgtgg tgcgcggagt
     1441 ggccgatgaa gatagtggcc ggcggggagc tggtagggaa ttggcgggga attggtggaa
     1501 gattgggatt cccgctgctc ctttggcggt cacttcgtgc tgggctgcgc gttttgaccg
     1561 ttgaggggtg ctgtctgtcg gtggaatcgt gtgattgtac gaaaaatggc cgttggatgc
     1621 atcggggtgc attgggggag ggcgtcacac actcgcaagc acacggcaat ggacgaggcc
     1681 gatctgaggt tcgtgcggag ggtgccacgc actcgcactc gctgccgcgc gcttgcactg
     1741 ggcgaacggg tgggtgtggc cgccggccgt ggggcgaggg tgtgccggtc gccgcgatct
     1801 gtgctcgagg gggcgttgtg ccgtcatggt cgacgcgttt tggcagagcg cggtgaatcg
     1861 tcgaatatcg aaccggttcg acacgccgag agcagagcgc ttgcgtgcgc gtgaaaaatg
     1921 aggtaaaaca atactcgaac cggttcgata cggcagctcg cgcaacgatg aagcttcagg
     1981 cagacgcatc gccccggaga tatcccgaag acgtgataga cgaatccagg aggagccatg
     2041 aagaacaaag ttcagctgat cacctatgcg gatcgcttgg gtgacggcaa tcttgcttcg
     2101 atgaccgaca ttctgcgcac gcgattcgac ggcgtatacg agggcgtgca cattctgccg
     2161 ttcttcaccc cgttcgatgg cgcggacgca ggcttcgacc cgatcgacca caccaaggtc
     2221 gacgcccgcc tcggcgactg ggatgacatc gccgagctcg ccaagacgca tgacatcatg
     2281 gtcgatgcca tcgtcaacca catgagttgg cagtccaagc agttccagga tgtgctcgcg
     2341 aatggcgagg attcggagta ctacccgatg ttcctcacga tgagctccgt gtttcccgac
     2401 ggcgcgaccg aggaggagct cgccggcatc taccgcccgc gcccgggcct gccgttcacc
     2461 cactacagct tcgccggcaa gacccgcttg gtgtgggtca cgttcacgcc gcagcaggtc
     2521 gacattgaca ccgactccgc caagggctgg gaatacctga tgtcgatctt cgaccagatg
     2581 agcaagtcgc acgtcaagta catccgtctc gacgccgtcg gctacggcgc caaggaggcc
     2641 ggcaccagct gcttcatgac tcccaagacc ttcgaactca tctcgcgact gcgcgaggag
     2701 ggcgccaagc gcggtctgga gattctcatc gaggtacact cgtactacaa gaagcaggtg
     2761 gagatcgccg ccaaggtgga tcgcgtctat gacttcgcat tgcctccgct gctgctgcac
     2821 tcgctgttca ccggcaaggt ggacgcgctc gcgcactgga ctgagattcg cccgaacaac
     2881 gccgtcaccg tgctcgacac gcacgacggc atcggcgtca tcgacatcgg ctccgaccag
     2941 ctcgaccgtt cgctcaaggg tctggtgccc gacgcggacg ttgacaacat ggtcgagacg
     3001 atcgcgaaga acacccatgg cgagtcgaag gccgcaaccg gcgccgccgc ttcgaacctc
     3061 gacctctacc aggtgaactc cacatactat tcggcgctcg gctgcaacga ccagcattac
     3121 attgccgcgc gcgccgtgca gttcttcctg ccgggcgttc cgcaggtgta ctacgtgggc
     3181 gcgctcgccg gcgagaacga catggagctg ctcaagcgca cgaatgtggg ccgcgacatc
     3241 aaccgccact attacacgac ctccgagatc gacaagaacc tcgaacgtcc ggtggtcagg
     3301 gccctgaacg cgctcgccag attccgcaac gagctgccgg cgttcgacgg cgacttcagc
     3361 tactcggtgg gcaatgacga gtcgattgcg ttctcctgga acgggttcgg ctcctccgcc
     3421 acgctcacgt tcacgccgtc caagggcatg ggtgtcgaga acccacagtc cgtcgccacg
     3481 ctcgtctgga cggattccac cggcgagcac cgcaccgacg acctcattgc gaacccgccc
     3541 gtcatgcagg cgagctgatg cgcggttccc gatagagatt tcagatattt gcagattctc
     3601 ggaaaagaga aaccatggtt gacgaacaag acacccacgg agggagcgcg ccgtcgacgg
     3661 gctcgaacgg ctacattcgc ccgggcatcg acgaccgccc cgacttcgat aaggcattga
     3721 gccagaaaga caaggagaac atctcccgtc tcaccgcgcc gatgccgaag aagcgagccg
     3781 ccgacagcag tgtgggcgac gagcaggtgc agggcaccaa actcgccacc gattcgcagg
     3841 ccgtcggttc gggcatggcc gcactcgccg ccgtcgacac cgcggtgccg gacgaggcgt
     3901 ccgcgttcat ggacatgcgc gatccgatgg tctcggccga cggccaccgc cccaccaggg
     3961 ccgaactcgt gcgcttgggc atcggcttca ccgtctccgc agtcgcctgc gcgattccgt
     4021 gggtggcgct gagcaccgtc attctgccgc gcgtgttcga gctgatcgac aactcgagca
     4081 aggaggccat gctcggcttg gtcaactcga tcggtgcgat tgtggcgttg ctggcgaaca
     4141 tcatcttcgg cacgctgtct gacatgacgc gctcccgctt cggcaagcgc acgccgtgga
     4201 tcgtgggcgg cggtatcatc accggtcttg ccatcggagc catcgcattc acgcgcaacg
     4261 aggcgttgat catcttcctg tggtgcgtcg cccagatggg ctacaacatg atgctcgcgc
     4321 catacgtggc cgtgatgtcc gaccgtgtgc ccgacaaggt gcgcggtacg atctccggct
     4381 tctacggcgc cggcatcgcc gtcggccaga cgctcggctc ggtcgtgggt gccgcgttcc
     4441 tgcgccaggg gcagtcggga ctcctctccg catggatgat gggtctgggc atcttcagcc
     4501 tcaccggcat cttcgtcgtc gccatgtggc cgcgtgagaa gtcgagctgc ttcgaggagc
     4561 agagcgagca tgtgaccgtg aagtccgtgc tcctgaactt ccggccgccg cgccacgcgc
     4621 ccgacttcta ctacgcgctc gtcggccgca cgctcatgat gggcggttac tggatgatca
     4681 cgacctacca gctctacatt gcgcaggact acatctacgc cggcgatccg aatgcgaagg
     4741 acaaggcggc tacgatcatc gccaccatgg gcgtgatcac actcgtcgtc tcgctgatcg
     4801 ccgctgtcac ggcaggtccg atcaccgacc gtctcggcag gcgcaagctg ccggtggcgc
     4861 tcgcgagctg cctgttcgcc gtcggtgccg cgatgccgct gttcttccgc tcgccgatgg
     4921 gcatatatct gttcgccgcc gtcgccggcc tcggttacgg cgtctacaac gcgatcgacc
     4981 aggcgctcaa cgtggccgtg ctgccgaatc cgaaggaagc tggcaaggat ctgggtattc
     5041 tcaacctcgc caacacgctt tccacagtga tcggcacggc gatgacctcg ctcgtcgttt
     5101 ccatcgtcaa gagctcgatg cacgtctcca ccacccccgc cgtcgcctac gcatgggtgt
     5161 tcggcgtcgc gatcgtgatc gtgctcgccg cggccgcgct catcatgcgc atccgcaacg
     5221 tcaagtaa
//
