LOCUS       CP028460                6234 bp    DNA     linear   BCT 22-OCT-2018
DEFINITION  Bifidobacterium animalis subsp. animalis strain CNCM I-4602
            chromosome, complete genome.
ACCESSION   CP028460
VERSION     CP028460.1
DBLINK      BioProject: PRJNA445301
            BioSample: SAMN08774047
KEYWORDS    .
SOURCE      Bifidobacterium animalis subsp. animalis
  ORGANISM  Bifidobacterium animalis subsp. animalis
            Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae;
            Bifidobacterium.
REFERENCE   1  (bases 1 to 6234)
  AUTHORS   Egan,M., Bottacini,F., O'Connell Motherway,M., Casey,P.G.,
            Morrissey,R., Melga,S., Faurie,J.-M., Chervaux,C., Smokvina,T. and
            van Sinderen,D.
  TITLE     Staying alive: Growth and survival of Bifidobacterium animalis
            subsp. animalis under in vitro and in vivo conditions
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6234)
  AUTHORS   van Sinderen,D., Chervaux,C. and Smokvina,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-APR-2018) School of Microbiology, University College
            Cork, Western Road, Cork ND, Ireland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method        :: SMRT Analysis v. 2.3
            Expected Final Version :: yes
            Genome Coverage        :: 400.0x
            Sequencing Technology  :: Pacbio SMRT sequencing
            ##Genome-Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..6234
                     /organism="Bifidobacterium animalis subsp. animalis"
                     /mol_type="genomic DNA"
                     /strain="CNCM I-4602"
                     /host="Homo sapiens"
                     /sub_species="animalis"
                     /db_xref="taxon:302912"
                     /country="France"
                     /collection_date="01-Oct-2014"
     gene            complement(1..1518)
                     /locus_tag="CNCMI4602_0490"
     CDS             complement(1..1518)
                     /locus_tag="CNCMI4602_0490"
                     /codon_start=1
                     /transl_table=11
                     /product="gnl|TC-DB|Q9X761|2.A.2.2.3"
                     /protein_id="AYN23350.1"
                     /translation="MTSNKFQAGAGQTASSAASSDMLRSTTPKTARHGLIRQRAAFAFG
                     NLGQAAFYNAMSTFFMTYVTTALFARTDKAVAARMIALITGLVVAIRIAEIFLDPILGN
                     IVDNTRTKWGRFRVWQFIGGIVPSVLLVVVFTGLFGLVNVNTTWFITLFIVTFILLGVF
                     YSARDISYWGMIPALSSDSHERSVYTSLGTLTGSLGYNGITVVVIPIVSYFTFKFTGEQ
                     GEGQPGWTAFAIIVALLGLITAWTVAFGTRESSSELRKQDSHCGPLDAFKAIAHNDQLL
                     WTALSYLLYAIANVATTGVLFYQFTYVLGMPQRFAIAGVIPVITGLVTTPLYPLLNRVI
                     PRRWLFAGGMGLMILGYALFIAAPRNLSVVLVALILFYLPAQTIQMTAILTMTDSIEYG
                     QLKTGQRNEAVTLSVRPMLDKIAGAFSNGIVGFVAVAAGMVGSASAADMTSANIHTFTT
                     WAYIVPSAGIVLSLIVFLLTVRIDEKRHAQIVRELETQLADSANTER"
     gene            1828..5031
                     /locus_tag="CNCMI4602_0491"
     CDS             1828..5031
                     /locus_tag="CNCMI4602_0491"
                     /codon_start=1
                     /transl_table=11
                     /product="GH2"
                     /protein_id="AYN23351.1"
                     /translation="MNEETLQEVAEEKATEPPRNDVPSTDGALQSEEPTAAWLTDPRVF
                     AVNRLPGHTDHNCADDQSGALKQHLDGEWAVKVVPSHLDRLPTESLDEHWQHAHLPPAF
                     ASRSFADGDFTRVQVPGCLEMQGLMRPQYVNIQYPWDGHENPQAPSVPTDNLVALYRRA
                     FTADDRVGEALSRGERVSLTFHGAVTAIYVWLNGVFVGYAEDSYTPSEFDVTEALHAGE
                     NLLAVACFQYSSASWLEDQDSWRFHGLFRDVELEVRPHAHVRDMLAHADWNVDAQCGEL
                     AVELDLDGAWCAANVELRLSTWEEHADGAALLWSATVESAPKIRYATTCEQVLPWSAEQ
                     PNLYVLEAVVRNANGRVLETARTRIGFRHVEIRDGVLELNGERIVFHGVNRHEFDARRG
                     RSVTEEDMLWDVRFMKRHNINAVRTSHYPNQTRWMELCDEYGLYVIDEANLETHGSWNL
                     PGDTADGVSIPGDDVRWQPACVDRVESMVRRDRNHACVVAWSLGNESYAGDVIRAMGNR
                     CRELDPTRPVHYEGVTWNREYDDISDFESRMYAKPDEIREYLESDPAKPYISCEFMHAM
                     GNSVGGLGEYVALERYPQYQGGFIWDFIDQALWQRLDDGTERLAYGGDFGDRPSDYEFS
                     GDGIVFADRTVSAKAQEVKAQYAGVRLEPDGRGVRVTNTNAFQGTSSTVFVARMLLDGR
                     EAWSKSYEFEVAAGSARSFDIGFPDVHSLPDGGVMHEVVYEVSQQLAHDTAWAEAGYEI
                     AWGQAVVRPHASGRSGSKMNDAFDDDNLQIVTLGRWNAGVRVGRREILLSRTHGGVISL
                     RDGEREYVIRVPKLLTFRPLTDNDRGMSSGFDRVQWFGAGRYARVVTGVGQVYHDELTG
                     DLCGEYWYELADGAQTQVPIRYRIDSQLRMHIELEYTGCAGAPSLPAFGLEWMLPKQYE
                     NLEFYGRGPAETYRDRKRAKLGIWNTTAQEDMAPYLVPQETGNHEDVRWAYVFDADCHG
                     LLVEADDSLALSLLPHSSLEIENATHQNELAQPRHMFLRLLAGQMGVGGDDSWGAPVHD
                     RYLLPADEPLKLAVTISML"
     gene            complement(5239..6234)
                     /locus_tag="CNCMI4602_0492"
     CDS             complement(5239..6234)
                     /locus_tag="CNCMI4602_0492"
                     /codon_start=1
                     /transl_table=11
                     /product="DBD-Pfam|LacI,DBD-SUPERFAMILY|0044558"
                     /protein_id="AYN23352.1"
                     /translation="MVTRKDIAEQAGVSQSTVSRLLNGDPTLKVKADTRRKIMRTAAEL
                     GYRAFTSRSIAVLNVPPQFDELQDAYFQSLQTELRKVADEQGTTLTFFGSIDSLIAHAD
                     DYDGFVATGPTSFQRTDLAHLRDALRYGVFIDTNPAPDWFDSVRPDLSQTMLDALDTLL
                     VDGYTCIGYIGGVGSIMGLHNHTEDIRSLAFSDWSKRLGLPNEQYIYADGPFTVSNGRA
                     LAARLLTDHPDDLPNALVIGSDPMAVGVLQAFAEAGVRVPTDIAVVSVDNLPIAQYTAP
                     PLSSYAIDLHELVYAALTTLTDAIARDRHVRRHVLLSTELVRRESLPSKS"
ORIGIN
        1 tcaccgttcc gtgttcgcag agtcagcaag ctgcgtctcg agctcgcgaa caatctgcgc
       61 atggcgcttc tcgtcgatgc gcaccgtgag caggaacacg atcaggctga gcacaatgcc
      121 ggcggacggc acaatgtacg cccaagtggt gaacgtatgg atgttcgcac tcgtcatatc
      181 cgcggcggaa gccgatccca ccatgccagc agccactgcg acgaagccga cgatgccgtt
      241 cgagaaggcg cctgcgatct tgtcgagcat cggtcgcacg ctcagcgtca ccgcctcgtt
      301 gcgctgcccg gttttgagct gtccgtattc gatcgaatcg gtcatcgtga gaatcgcggt
      361 catctgaatc gtttgcgcag gcagatagaa cagaatgagc gccacgagca cgaccgatag
      421 attgcgcggg gccgcaatga acaatgcata cccgagaatc atgagcccca tgcccccggc
      481 gaacaaccat cgacgtggga tcacacggtt gagcaacgga tacagcggcg tggtgaccag
      541 gccggtgatc acgggaatca cgcccgcgat ggcgaaacgc tgcggcatgc cgagcacata
      601 ggtgaactgg tagaacagca cgccggtggt cgccacgttc gcaatggcat acagcaggta
      661 gctcaatgcg gtccacagca gttggtcgtt gtgggcgatg gccttgaacg cgtcaagtgg
      721 gccgcaatgg gagtcctgtt tgcgtagctc gctcgagctc tcacgtgtac cgaatgcgac
      781 ggtccacgcg gtgatgagcc ccagcagtgc gacgatgatg gcaaatgcag tccaccccgg
      841 ttggccttcg ccctgctcgc cggtgaattt gaaggtgaag tagctgacga tgggaatgac
      901 gacgacggtg atgccgttat agccaagcga accggtgagc gtgccgagtg aagtgtagac
      961 gctgcgttca tgcgaatcgc tggagagtgc cggaatcatg ccccaatagg agatgtcgcg
     1021 cgccgagtag aacacgccga gcagaatgaa cgtgacaatg aacagcgtga tgaaccaggt
     1081 ggtgttcacg ttgacgagtc caaacaggcc ggtgaacacc accacgagca gcacggaggg
     1141 cacaatgccg ccgatgaact gccagacgcg gaaacggccc cacttggtgc gcgtgttgtc
     1201 gacgatattg cccaagatcg ggtcgaggaa gatctccgcg atgcggatgg caacgaccag
     1261 tccggtgatc agggctatca tgcgcgcggc cacggccttg tcggtgcgcg cgaacaacgc
     1321 cgtggtcacg taggtcatga agaacgtgct catggcgttg tagaacgccg cctgaccaag
     1381 attgccgaag gcgaaggccg cgcgctggcg gattaaaccg tgtcgtgcgg tcttcggggt
     1441 ggtcgaacgg agcatgtcgg aggatgcggc agacgacgct gtctgcccgg cacccgcttg
     1501 gaatttgttg ctggtcatgt gacctaacct ccttcattgg cgattacagt tcacatacta
     1561 tacacgattt actaaatttg tttaccgcgt gttggtgtcg atctgtctaa ttatcgattg
     1621 ctgcagtatt tgaaaatcgg ctcaagatat atgtttcatg gatatatact ctttctatgt
     1681 gaatgtctgt ctatgaagag attgcgcaat atgctgaatt cttgttgcgt gatattggta
     1741 aatagtttac tattgcgtag tacaccgaag tacagagccg acggtaccag cgttggtacc
     1801 gcggtcaaat gcgagtcagg agcaacgatg aacgaggaga ccttgcagga agtcgcagag
     1861 gagaaggcga ccgagccccc gcgcaatgat gtgccgtcca ctgatggagc tctgcaatcc
     1921 gaagagccga cggcggcgtg gctgaccgat ccccgtgtgt tcgcggtcaa ccggctgccg
     1981 gggcataccg accacaattg cgccgacgat cagtccggcg cgttgaagca gcacctcgac
     2041 ggcgaatggg cggtgaaggt ggtgccctcg cacttggatc ggctccccac ggagagcttg
     2101 gatgagcatt ggcagcacgc ccaccttccg ccggcattcg catcgcgcag cttcgccgat
     2161 ggcgacttca cccgtgtgca ggtgccgggg tgtctggaga tgcaggggct catgcgtccg
     2221 caatatgtga acatccaata tccgtgggat ggccatgaaa atccgcaggc accctccgtt
     2281 cccacagaca atctggtcgc actgtaccgg cgtgcgttca ctgccgatga tcgcgtgggc
     2341 gaggcgctgt cccgcgggga gcgcgtgagt ctgaccttcc acggtgcggt gacggcgatc
     2401 tacgtgtggc tcaacggcgt gttcgtgggg tacgcagagg attcctacac ccccagcgag
     2461 ttcgatgtga ccgaggcgct gcatgcgggg gagaatctgc ttgccgtggc gtgcttccaa
     2521 tactcgagtg cgagttggct ggaagaccag gattcctggc gtttccacgg attgttccgc
     2581 gacgtggagc tggaggtgcg acctcacgcc catgttcgcg acatgcttgc gcatgcggat
     2641 tggaatgtgg atgcgcagtg cggtgagctc gccgtcgaac tcgatctcga cggggcgtgg
     2701 tgtgcggcca atgtggagct gcggctcagc acatgggaag agcacgcaga cggcgcggcc
     2761 ctgctgtgga gcgcgacggt ggagtctgcc ccgaagatcc gctacgccac gacatgcgaa
     2821 caggtgctgc cgtggagcgc ggagcagccg aatctgtacg ttctcgaggc tgtggtgcgc
     2881 aatgcgaatg gtcgtgtgct ggaaaccgcg cgcacgcgca tcggattccg ccatgtggag
     2941 attcgcgatg gcgtgctcga gctcaacggc gaacgcattg tgttccatgg cgtcaaccgg
     3001 cacgaattcg acgcgcggcg cggacgcagc gtcaccgagg aggacatgct gtgggatgtg
     3061 cggttcatga agcggcacaa catcaatgcc gtgcgcacct cgcattaccc gaatcagacg
     3121 cggtggatgg aactgtgcga cgaatacgga ctctatgtga tcgacgaggc caatctggag
     3181 acgcatggca gctggaatct gcccggtgac acggccgatg gcgtctcgat accgggggac
     3241 gacgtgcgtt ggcagccggc ttgcgtggac cgtgtggaga gcatggtgcg ccgagaccga
     3301 aaccatgcgt gcgtggtcgc gtggtcgctc ggcaacgaat cgtacgcggg cgatgtgatc
     3361 cgcgcgatgg ggaatcgctg ccgagagctc gaccccaccc ggccggtgca ctacgagggc
     3421 gtgacctgga accgtgaata cgacgacatc agcgatttcg aatcgcgtat gtatgcgaag
     3481 cccgatgaga ttcgcgaata cctggaaagt gatccggcga aaccgtacat ctcctgcgaa
     3541 ttcatgcatg cgatgggcaa ttcggtggga ggactgggtg aatacgtcgc cttggagcgc
     3601 tacccgcaat accaaggcgg cttcatctgg gacttcatag atcaggcact atggcagcgg
     3661 ctcgacgacg gcacggaacg cctggcctat ggcggcgatt tcggcgacag gccgagtgat
     3721 tacgagttca gcggcgatgg cattgtgttc gccgaccgga ccgtgtcggc gaaggcgcaa
     3781 gaggtgaagg cacaatatgc cggcgtgcgt ctcgaaccgg atgggcgcgg tgtgcgcgtg
     3841 accaatacga atgcgttcca aggcacctcg agcaccgtgt ttgtggcgcg gatgcttctg
     3901 gacggacgtg aggcatggtc gaagagctat gagttcgagg tggcggccgg aagcgcccga
     3961 agcttcgaca tcggcttccc tgacgtgcat agtctgcccg acggtggcgt catgcatgag
     4021 gtggtgtatg aggtgagtca gcagttggcg catgacaccg cctgggcgga agcggggtat
     4081 gagatcgcat ggggacaggc cgtggtgcgt ccccatgcga gtggccgcag cgggtcgaag
     4141 atgaatgatg cgttcgatga cgacaatctg cagatcgtca ctctcgggcg atggaacgcc
     4201 ggagtgcgtg ttgggcggcg tgagatcctg ctgtcgcgca cgcatggcgg agtcatctcg
     4261 ttgcgcgacg gtgagcgtga atatgtgatt cgtgtgccga aactgctcac gttccgcccg
     4321 ctcaccgaca acgaccgtgg catgagctcc ggtttcgacc gcgtgcagtg gttcggtgcc
     4381 gggcggtatg cgcgcgtcgt caccggcgtg ggccaggtgt accacgacga gctcaccgga
     4441 gatctgtgcg gcgagtactg gtatgagttg gcagatggcg cgcagacgca ggtgccgatt
     4501 cgttatcgta tcgattcgca gttgcgcatg catatcgaac ttgagtatac ggggtgtgcg
     4561 ggtgcgccga gcctgccggc tttcggattg gagtggatgc tgccgaaaca gtatgagaat
     4621 ctggaattct atggtcgggg gcctgccgag acctaccgtg accgcaagcg cgccaagctc
     4681 ggcatctgga acaccacggc gcaggaggac atggcgccgt atctggtgcc tcaggaaacc
     4741 ggcaatcacg aggatgtgcg ttgggcctat gtgtttgacg ccgattgcca tgggctgctc
     4801 gtggaggccg acgactcgct cgcgctcagc ctgctgccgc acagttcgtt ggagatcgaa
     4861 aatgccacac accagaacga gttggcgcaa ccacgtcata tgttcctgcg cctgctcgca
     4921 gggcagatgg gtgtgggcgg cgacgactcg tggggcgctc ctgttcacga tcggtatctg
     4981 ctgccggcag acgaaccgct caagctggcc gtgacaatca gcatgctctg attcatgcat
     5041 tccgaacatg acgaacccgt gtctgtgtgc acgggttcgt cgcgttggaa acctgtagat
     5101 atgacaaacc agtgcgtggg tgtgcagatt ggtcgcgttg ggggtctgca gatgtgacga
     5161 acacgtgcag ggtgtgcggg ttcgtcatgc ggaggagtct gtgaatatga ccaaccagtg
     5221 cgcatgcgca cgtatgagtc atgatttgct tggcagactt tcgcggcgaa caagctcggt
     5281 gctcagcaga acatgccggc gcacgtgcct atcgcgcgcg atggcgtcgg tgagtgtggt
     5341 gagcgccgca tagacgagtt cgtgcaggtc gatggcgtag gaactcagcg gcggtgcggt
     5401 gtactgcgcg atcggcagat tgtcgacgct cacgacggcg atgtccgtgg gcacgcgcac
     5461 gccggcctct gcgaaggctt gcagcacgcc gacggccata gggtcggagc cgatcacgag
     5521 cgcgttggga agatcgtcgg ggtggtcggt gaggagacga gcggcgagtg cgcgtccgtt
     5581 gctcacggtg aacgggccgt cggcgtagat atactgctcg ttcggcaagc ccaggcgctt
     5641 gctccagtcg ctgaatgcga gcgagcgaat gtcttcggtg tggttgtgca ggcccatgat
     5701 cgagccgacg ccaccgatgt agccgatgca cgtgtaaccg tcgacgagaa gtgtatcgag
     5761 ggcatcgagc atcgtttggc tcaggtcggg gcgtaccgaa tcgaaccagt ccggcgccgg
     5821 attcgtgtca atgaacacgc cgtagcggag tgcgtcgcgc aggtgggcca gatcggtgcg
     5881 ctggaaagag gtgggtccgg tggcgacgaa gccgtcgtag tcgtcggcgt gtgcgatgag
     5941 actgtctatc gagccgaaga aagtgagcgt tgtgccctgc tcgtccgcga ccttgcgtaa
     6001 ctcggtttgc agcgactgga aataggcgtc ctgcaattcg tcgaattgtg gcggcacgtt
     6061 gagcacggct atcgaacggc tcgtgaacgc ccggtagcca agttccgcag ccgtgcgcat
     6121 gattttgcgg cgtgtatccg ccttcacctt gagggtgggg tcaccgttga gcagacggga
     6181 gacagtgctt tgcgagacgc cggcctgctc ggcgatgtct ttgcgagtga ccat
//
