LOCUS       CP001655                5910 bp    DNA     linear   BCT 25-OCT-2017
DEFINITION  Dickeya chrysanthemi Ech1591 chromosome, complete genome.
ACCESSION   CP001655
VERSION     CP001655.1
DBLINK      BioProject: PRJNA31295
            BioSample: SAMN02598480
KEYWORDS    .
SOURCE      Dickeya chrysanthemi Ech1591
  ORGANISM  Dickeya chrysanthemi Ech1591
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Pectobacteriaceae; Dickeya.
REFERENCE   1  (bases 1 to 5910)
  AUTHORS   Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Tice,H.,
            Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T.,
            Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
            Ovchinnikova,G., Balakrishnan,V., Glasner,J. and Perna,N.T.
  CONSRTM   US DOE Joint Genome Institute
  TITLE     Complete sequence of Dickeya zeae Ech1591
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5910)
  AUTHORS   Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Tice,H.,
            Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T.,
            Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
            Ovchinnikova,G., Balakrishnan,V., Glasner,J. and Perna,N.T.
  CONSRTM   US DOE Joint Genome Institute
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JUN-2009) US DOE Joint Genome Institute, 2800 Mitchell
            Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT     ##Metadata-START##
            Organism Display Name :: Dickeya zeae Ech1591
            GOLD Stamp ID         :: Gi03523
            Temperature Range     :: Mesophile
            Biotic Relationship   :: Free living
            ##Metadata-END##
            CP001655 was submitted as Dickeya zeae Ech1591, but it is 99.9988%
            identical to the genome from Dickeya chrysanthemi NCPPB 3533 (WGS
            entry AOOJ00000000.1)
            URL -- http://www.jgi.doe.gov
            JGI Project ID: 4085668
            Source DNA and bacteria available from Nicole T. Perna
            (ntperna@wisc.edu)
            Contacts: Nicole T. Perna (ntperna@wisc.edu)
            David Bruce (microbe@cuba.jgi-psf.org)
            Annotation done by JGI-ORNL and JGI-PGF
            Finishing done by JGI-LANL
            Finished microbial genomes have been curated to close all gaps with
            greater than 98% coverage of at least two independent clones. Each
            base pair has a minimum q (quality) value of 30 and the total error
            rate is less than one per 50000.
            The JGI and collaborators endorse the principles for the
            distribution and use of large scale sequencing data adopted by the
            larger genome sequencing community and urge users of this data to
            follow them. it is our intention to publish the work of this
            project in a timely fashion and we welcome collaborative
            interaction on the project and analysis.
            (http://www.genome.gov/page.cfm?pageID=10506376).
FEATURES             Location/Qualifiers
     source          1..5910
                     /organism="Dickeya chrysanthemi Ech1591"
                     /mol_type="genomic DNA"
                     /strain="Ech1591"
                     /db_xref="taxon:561229"
     gene            complement(1..1293)
                     /locus_tag="Dd1591_1966"
     CDS             complement(1..1293)
                     /locus_tag="Dd1591_1966"
                     /inference="protein motif:PFAM:PF01547"
                     /note="PFAM: extracellular solute-binding protein family 1;
                     KEGG: eca:ECA2406 periplasmic pectic oligomers binding
                     protein"
                     /codon_start=1
                     /transl_table=11
                     /product="gnl|TC-DB|Q93KB7|3.A.1.1.11"
                     /protein_id="ACT06815.1"
                     /db_xref="InterPro:IPR006059"
                     /translation="MKKVILRTLIASSLALMAHQSFAAEQVDLRMSWWGGNGRHQVTLK
                     AIEEFQKKYPDIKVKAEYTGWDGHLSRLTTQIAGNTEPDVMQTNWNWLPIFSRTGDGFY
                     DLNKVKDVLDLSQFDAKELQATTVDGKLNGIPISVTARVFYYNTETWKKSGLTAPKNWD
                     ELVNAGKVFKEKLGDQFYPLVLEHQDSLALLNSYMVQKYNIPAVDEKNKKFSYTDAQWV
                     EFFEMYKKLVDGHVMPSAKYYASFGKSNMYEMKPWIAGDWGGTYMWNSTITKYSDNLQP
                     PAKLELGAYPMLPGAKEAGLFFKPAQMLSIGKSSKHPKEAAMLINYLLNSKEGIQALGL
                     ERGVPLSKAAVAQLRADGVIKDNDPSVAGLNQALSLPHETKTSPYFDDPQIVALFGDAI
                     QYIDYGQKSVEETAKYFQRQADRILKRAMKE"
     sig_peptide     complement(1222..1293)
                     /locus_tag="Dd1591_1966"
                     /note="Signal predicted by SignalP 3.0 HMM (Signal peptide
                     probability 1.000) with cleavage site probability 1.000 at
                     residue 24"
     gene            complement(1308..2435)
                     /locus_tag="Dd1591_1967"
     CDS             complement(1308..2435)
                     /locus_tag="Dd1591_1967"
                     /inference="protein motif:PFAM:PF00005"
                     /note="PFAM: ABC transporter related; Transport-associated
                     OB domain protein; SMART: AAA ATPase; KEGG: eca:ECA2405 ABC
                     transporter, ATP-binding component"
                     /codon_start=1
                     /transl_table=11
                     /product="gnl|TC-DB|Q93KB8|3.A.1.1.11"
                     /protein_id="ACT06816.1"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR013611"
                     /db_xref="InterPro:IPR017871"
                     /translation="MAEVIFNKLEKVYSNGFKAVHGIDLTIKDGEFMVIVGPSGCAKST
                     TLRMLAGLETISGGEVRIGERIVNNLAPKDRGIAMVFQNYALYPHMTVRENLAFGLKLS
                     KMPKDKIEAQVNEAAKILELEELMDRLPRQLSGGQAQRVAVGRAIVKKPDVFLFDEPLS
                     NLDAKLRASMRIRISDLHKQLKKSGHPATSVYVTHDQTEAMTMGDRICVMKLGHIMQVD
                     TPDNLYHFPKNMFVAGFIGAPEMNIKPGKLLEDNGQISLQVGKYTMGLNQSKQDKVRGY
                     IGKDICFGVRPEYVTVSESPFDGGHFQGELVRAENMGHEFFMYIKVDGFELTSRMPSDE
                     ARVIINNGLNRQVYFKFDMDKCHIFDAKTEQNISL"
     gene            complement(2449..3351)
                     /locus_tag="Dd1591_1968"
     CDS             complement(2449..3351)
                     /locus_tag="Dd1591_1968"
                     /inference="protein motif:PFAM:PF00528"
                     /note="PFAM: binding-protein-dependent transport systems
                     inner membrane component; KEGG: ent:Ent638_3290
                     binding-protein-dependent transport systems inner membrane
                     component"
                     /codon_start=1
                     /transl_table=11
                     /product="gnl|TC-DB|Q93KB9|3.A.1.1.11"
                     /protein_id="ACT06817.1"
                     /db_xref="InterPro:IPR000515"
                     /translation="MADIHSPLSAQSIAAAEVRRTLRREKINAAIRYIILLFVGILMLY
                     PLAWMFSASFKPNHEIFTTLSLWPAHATWDGFINGWKTGTEYNFGHYMINTFQYVIPKV
                     VLTVISSTIVAYGFARFEIPWKNFWFATLIATMLLPSTVLLIPQYIMFREMGMLNSYLP
                     LYVPVAFATHGFFVFMLIQFLRGVPRDMEEAAQIDGCNSWQVLWYVVVPILKPAIISVA
                     LFQFMWSMNDFIGPLIYVYSVDKYPIALALKMSIDVTEGAPWNEILAMASISILPSIII
                     FFMAQRYFVQGVTSSGIKG"
     gene            complement(3344..4234)
                     /locus_tag="Dd1591_1969"
     CDS             complement(3344..4234)
                     /locus_tag="Dd1591_1969"
                     /inference="protein motif:PFAM:PF00528"
                     /note="PFAM: binding-protein-dependent transport systems
                     inner membrane component; KEGG: eca:ECA2403
                     binding-protein-dependent transport system, inner membrane
                     component"
                     /codon_start=1
                     /transl_table=11
                     /product="gnl|TC-DB|Q93KC0|3.A.1.1.11"
                     /protein_id="ACT06818.1"
                     /db_xref="InterPro:IPR000515"
                     /translation="MNENRMLGLAYISPYIIGLIVFTAFPFLSSFVLSFTEYDLMSPPT
                     FTGLENYHRMFMEDDLFWKSMGVTFAYVFLTIPLKLIFALLIAFVLNFKLRGIGFFRTA
                     YYVPSILGSSVAIAVLWRALFAIDGLLNSFIGVFGLDPVNWLGEPSLALMSVTLLRVWQ
                     FGSAMVIFLAALQNVPQSQYEAAMIDGASKWQMFLKVTVPLITPVIFFNFIMQTTQAFQ
                     EFTAPYVITGGGPTHYTYLFSLYIYDTAFKYFDMGYGAALAWVLFLVVAVFAAISFKSS
                     KYWVFYSADKGGKNG"
     gene            complement(4279..5910)
                     /locus_tag="Dd1591_1970"
     CDS             complement(4279..5910)
                     /locus_tag="Dd1591_1970"
                     /EC_number="4.2.2.9"
                     /inference="protein motif:PRIAM:4.2.2.9"
                     /note="PFAM: periplasmic pectate lyase; KEGG: eca:ECA2402
                     pectate disaccharide-lyase"
                     /codon_start=1
                     /transl_table=11
                     /product="PL2_2"
                     /protein_id="ACT06819.1"
                     /db_xref="InterPro:IPR010702"
                     /translation="MSIFTDLNTSRKWQIDQWLSAINSHIEKIQQCGHSQINPTPLLVD
                     GFEIKTQSPVVWQFPDGHDAPISNFASQQNWLKLLVSMSVVTETEKYRQSAFSQCEYFL
                     DHFVDDNSGLFYWGGHRFINLDTLTTEGPESKSLVHELKHHLPYYEFLYQVNPEKTHHF
                     IQGFWNAHVENWDCLDLGRHGDYARPRDPHVFLHTRHDVVDPAKWPELPLTKGLTFVNA
                     GTDLIYAAFVYARHNDDVHAANWGKHLYRQYVLARNPETGMPVYQFSSPLQRQPVPADD
                     NQTQSWFGDRAQRQFGPEFGAIAREANVLFRDMRPLLIDNPLAMLDILQHHPDTDMLTW
                     VITGLKNYYQYAYDVDSNSLRPMWNDGQDMTGYCFKRDGYYGKAGTILQPFPLEGDYLL
                     PLVRAWCLSDDDDLYTLIVTMLSRLEKQGIHQSASPFLLLAITELAQAKQSAQWAEYAW
                     QMAEILFKRYFHHGLFVRSEHHRYVRLDDPFPVILLTLIAACRNKWSEIPAILTQGGYI
                     HGDYRINGESRVIYDTEFIYPEKLIQ"
ORIGIN
        1 ttattctttc atggcgcgtt tcagaatacg atcagcctga cgttggaagt atttggcggt
       61 ttcttccact gatttctgac cataatcgat atattgaatg gcatcaccaa acagggcgac
      121 gatttgcgga tcgtcgaaat aaggcgatgt cttggtttca tgcggtaagg acaatgcctg
      181 gttcaggccc gctaccgatg ggtcgttgtc tttgatgacg ccatcggcac gcaactgagc
      241 aacggctgct ttgcttaacg gcacgccgcg ttccagtccc agcgcctgaa tgccttcttt
      301 actgttcaac aggtagttga tcaacatagc ggcttctttc gggtgcttgc tggacttgcc
      361 gatagacaac atctgagctg gtttaaagaa taatcccgct tctttggcac ccggcagcat
      421 ggggtaggca cccagttcca gtttggccgg cggctgcagg ttatcggagt acttggtgat
      481 ggtggagttc cacatgtacg tgccacccca gtcaccggca atccacggct tcatttcata
      541 catgttgctc ttgccgaacg aagcgtagta tttcgcagac ggcatgacgt ggccatcaac
      601 cagcttcttg tacatctcga agaactctac ccattgcgcg tcggtataag agaatttctt
      661 gtttttctcg tccaccgccg gaatgttgta cttctgtacc atgtaagaat tcagcaacgc
      721 caacgagtcc tgatgctcca gcaccagcgg atagaattgg tcgcccagtt tttctttgaa
      781 gactttgccg gcattcacca gttcatccca gtttttcggg gcggtcaggc cggatttctt
      841 ccaggtttcg gtgttgtaat agaagacgcg cgccgtcacg gaaatcggaa tcccgttcag
      901 tttgccgtca accgtcgtcg cctgcagttc tttcgcatca aactgcgaca ggtccagcac
      961 gtctttcact ttgttcaggt cgtagaagcc atcaccggta cgggagaata taggcagcca
     1021 gttccagttg gtctgcatta catcaggctc ggtattaccc gcgatctgcg tggtcaaacg
     1081 agacagatgt ccatcccaac cggtgtattc tgctttaacc ttgatatccg gatatttttt
     1141 ctggaattcc tcaatggctt tcagtgtcac ctggtggcga ccgttgccac cccaccatga
     1201 catacgtaag tcaacctgct cagccgcaaa ggactgatgc gccatcagtg caagagaaga
     1261 ggcaatcaat gtgcgtagga tcactttttt catcggttat actcctgtta aagagagata
     1321 ttttgttctg ttttggcatc aaagatatgg catttatcca tatcgaactt gaaatacacc
     1381 tgacgattca atccattgtt gataatcacc cgtgcttcgt ctgacggcat acggctggtc
     1441 agttcaaatc catcaacctt gatgtacatg aagaactcat ggcccatgtt ttcggcacgc
     1501 accaattcac cctggaaatg accgccgtcg aacggcgatt cagataccgt gacatactct
     1561 gggcgaacgc cgaagcagat atctttacca atgtaaccgc gaactttgtc ttgcttcgac
     1621 tggttaagac ccatggtgta tttgcctacc tgcagcgaga tctgtccatt atcttccagc
     1681 agcttgccgg gtttgatatt catttccggc gcgccgataa acccggcgac aaacatgttt
     1741 ttcgggaagt ggtacagatt atccggcgta tcgacctgca taatgtggcc cagtttcatg
     1801 acgcaaatac ggtcacccat cgtcatggcc tcggtctggt catgggtcac gtagacgctg
     1861 gtggccggat ggccgctctt cttcaactgt ttgtgcagat ccgagatacg gatacgcatt
     1921 gaggcgcgca atttcgcgtc caggttggag agcggttcgt caaacaggaa cacatccggt
     1981 tttttgacga tggcgcgccc aaccgcaacg cgctgcgcct gaccgccgga caactggcgc
     2041 ggcaagcgat ccatcaattc ttccagttcc agaatcttag ccgcttcgtt aacttgcgct
     2101 tcgatcttgt ctttcggcat cttgctgagt ttcaggccga aggccaggtt ttcgcgaacc
     2161 gtcatgtgcg ggtagagcgc atagttctgg aacaccatcg cgatgccacg atctttcggc
     2221 gccagattgt tgacgattct ttcgccgatg cgaacttcgc cgccgctgat ggtttccagc
     2281 ccggccaaca tgcgcagggt ggtggatttc gcacaaccag acggccctac gataaccatg
     2341 aattcgccgt ctttgatcgt caggtcgata ccgtgaactg ctttgaaacc gttggagtaa
     2401 actttttcca gtttgttgaa aatgacttca gccatgataa atcctcaatt aacctttaat
     2461 tccgctgctg gtaacgccct gaacgaagta gcgctgagcc atgaagaaaa taatgatgga
     2521 cggcagaatg gagatactcg ccattgccag aatttcgttc cacggtgcgc cttctgttac
     2581 gtcgatagac attttcagag ccagcgcaat cgggtatttg tccacgctgt aaacgtaaat
     2641 cagcgggccg ataaagtcgt tcattgacca catgaactgg aacagcgcaa ccgaaatgat
     2701 ggccggtttc agaataggca cgacgacgta ccacaatacc tgccaggagt tacaaccatc
     2761 gatctgtgcg gcttcttcca tatcacgcgg tacgccgcgc aggaactgga tcagcatgaa
     2821 tacaaagaac ccatgcgtag cgaatgcgac cggcacatac aacggcagat agctgttcaa
     2881 catgcccatt tcacggaaca tgatgtactg cggaatcagt aaaacggtac ttggcagcaa
     2941 catggtggcg atcagggtcg cgaaccaaaa gtttttccac ggaatttcaa accgggcaaa
     3001 accataagcc acgatggtgg aagagataac cgtcagtacc actttcggaa tcacatactg
     3061 gaaggtattg atcatgtagt gaccgaagtt gtactcagtg ccggttttcc agccgttgat
     3121 aaagccatcc caggtggcgt gtgccggcca caggctgagg gtcgtgaaaa tctcatggtt
     3181 cggtttgaac gatgcagaga acatccacgc caacggatag agcatcagaa tgccgacgaa
     3241 cagcaaaata atgtagcgga tggccgcatt gattttttca cggcgcagcg tgcggcgaac
     3301 ttctgccgca gcgatactct gcgcagacag tggggaatga atatcagcca ttttttcctc
     3361 ctttatcggc ggaatagaac acccagtatt tagacgattt aaaggagata gcggcgaata
     3421 cggctaccac caggaacagc acccatgcca gggccgcgcc gtaccccata tcgaaatact
     3481 tgaaggccgt atcatagata tagagcgaga acagataggt gtagtgggtt gggccaccac
     3541 cggtaatgac gtagggcgcg gtaaattcct gaaacgcttg cgtcgtctgc ataataaagt
     3601 tgaagaaaat aaccggtgta atcagcggta cggtgacttt caggaacatc tgccatttcg
     3661 atgcgccatc gatcatcgcc gcttcatact gcgattgcgg tacgttttgc aaggcagcca
     3721 ggaagatcac catcgcggag ccgaactgcc agacacgcag taaggtaacc gacatcagcg
     3781 ccagcgacgg ttcacccagc cagttgaccg gatctaaacc aaagacgccg ataaaactgt
     3841 tcagcaaccc gtcgatggcg aacaaggcgc gccacagtac ggcgatagcc acgctgctgc
     3901 cgagaatcga cggtacgtaa taagcggtac ggaaaaaacc gattccgcgt aacttgaaat
     3961 tcagcacgaa cgcaataagc agtgcaaaaa tcagtttcag cgggatagtc aaaaagacat
     4021 aagcaaatgt tactcccatg gatttccaga aaagatcgtc ctccataaac atccggtggt
     4081 aattttccag accggtgaat gtggggggac tcattaaatc gtactcagta aaactgagca
     4141 caaatgatga aagaaagggg aaagcagtga aaactatcaa ccctattata tagggagaga
     4201 tataagctaa ccccagcatt ctgttttcat tcataatgcc tacctacttt agtaatggtg
     4261 agtctgtaaa aaataaaatt attggattaa tttttccggg taaataaatt ccgtgtcata
     4321 aataactcgg ctttctccat taatacggta gtcgccatga atatatcccc cctgagttaa
     4381 aatagcaggt atctctgacc atttatttct gcaggcggct atcagcgtca gcagaatgac
     4441 cgggaaagga tcgtcaagtc gtacatagcg atgatgttct gatcgtacga ataaaccgtg
     4501 atggaaatag cgtttgaata aaatttccgc catctgccag gcgtattccg cccactgcgc
     4561 cgattgtttg gcctgcgcca actcggtaat cgccaacagc aagaacggcg aggcggattg
     4621 atgaatacct tgtttctcca gccgcgagag catcgtgacg atcagcgtgt acaggtcgtc
     4681 atcatcgctc aggcaccaag cgcgtaccaa tggcagcagg taatcgcctt ccagtgggaa
     4741 aggttgcaga atggtgcctg ctttaccgta gtagccatca cgtttgaagc agtagccggt
     4801 catgtcctga ccgtcgttcc acattggccg caggctgtta ctatcgacat cgtaagcata
     4861 ctgataatag tttttcaggc cggtgatcac ccaggtcagc atgtccgtgt cgggatgatg
     4921 ctgtaaaata tccaacatag ctaacgggtt atcgatcagt agcgggcgca tatcgcgaaa
     4981 cagtacgttg gcctcacggg ctatcgcgcc aaattccggg ccgaactgcc gctgtgcgcg
     5041 gtcgccaaac caggattggg tttgattatc atcggcgggt acaggctggc gctgtaatgg
     5101 cgagctgaat tgataaaccg gcataccggt ttccgggttg cgcgccaaca catactggcg
     5161 atagagatgc ttaccccagt ttgccgcatg tacatcatcg ttgtgacgag cataaacgaa
     5221 tgcggcgtag atcagatcgg ttccggcatt aacaaaggtt aagcccttgg ttaacggcag
     5281 ttcaggccac ttggcagggt ctaccacatc atggcgagta tgcagaaaga catgcggatc
     5341 gcgcggtctg gcgtaatcgc catggcggcc tagatccagg cagtcccaat tctctacatg
     5401 cgcattccag aagccctgaa taaaatgatg ggttttttcc ggattaacct gatacaaaaa
     5461 ttcgtaatag ggcaaatggt gttttaattc atgcaccaat gatttggatt ctggaccttc
     5521 ggtggtcagc gtatcaagat taataaaacg atgaccaccc caataaaaaa gcccgctgtt
     5581 gtcatcgaca aaatgatcca gaaaatactc gcactgagaa aaagcagact ggcgatattt
     5641 ttccgtttct gtgacgacgc tcatagatac taataatttc aaccagtttt gctgactggc
     5701 gaagttggat atcggtgcgt catgaccatc gggaaactgc cagacaactg gagattgtgt
     5761 ttttatctca aatccgtcaa ccaataacgg cgttggattg atctgactgt ggccgcattg
     5821 ttgaattttt tcaatatggc tgttaatcgc cgacaaccat tggtcgattt gccattttct
     5881 gctggtgttc aaatcagtaa aaatactcat
//
