LOCUS       NC_016023               4467 bp    DNA     linear   CON 26-AUG-2019
DEFINITION  Bacillus coagulans 36D1, complete genome.
ACCESSION   NC_016023
VERSION     NC_016023.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN00623030
            Assembly: GCF_000169195.2
KEYWORDS    RefSeq.
SOURCE      Bacillus coagulans 36D1
  ORGANISM  Bacillus coagulans 36D1
            Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.
REFERENCE   1  (bases 1 to 4467)
  AUTHORS   Rhee,M.S., Moritz,B.E., Xie,G., Glavina Del Rio,T., Dalin,E.,
            Tice,H., Bruce,D., Goodwin,L., Chertkov,O., Brettin,T., Han,C.,
            Detter,C., Pitluck,S., Land,M.L., Patel,M., Ou,M., Harbrucker,R.,
            Ingram,L.O. and Shanmugam,K.T.
  TITLE     Complete Genome Sequence of a thermotolerant sporogenic lactic acid
            bacterium, Bacillus coagulans strain 36D1
  JOURNAL   Stand Genomic Sci 5 (3), 331-340 (2011)
   PUBMED   22675583
REFERENCE   2  (bases 1 to 4467)
  AUTHORS   Shanmugan,K.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-SEP-2011) Department of Microbiology and Cell Science,
            University of Florida, Gainesville, FL 32611, USA
REFERENCE   3  (bases 1 to 4467)
  AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
            Dalin,E., Tice,H., Bruce,D., Goodwin,L., Chertkov,O., Brettin,T.,
            Han,C., Detter,C., Pitluck,S. and Shanmugam,K.T.
  CONSRTM   US DOE Joint Genome Institute (JGI-PGF)
  TITLE     Direct Submission
  JOURNAL   Submitted (27-APR-2009) US DOE Joint Genome Institute, 2800 Mitchell
            Drive B100, Walnut Creek, CA 94598-1698, USA
REFERENCE   4  (bases 1 to 4467)
  AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
            Dalin,E., Tice,H., Bruce,D., Pitluck,S. and Richardson,P.
  CONSRTM   US DOE Joint Genome Institute (JGI-PGF)
  TITLE     Direct Submission
  JOURNAL   Submitted (25-JAN-2007) US DOE Joint Genome Institute, 2800 Mitchell
            Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 08/26/2019 03:54:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
            Annotation Method                 :: Best-placed reference protein
            Annotation Software revision      :: 4.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
            Genes (total)                     :: 3,414
            CDSs (total)                      :: 3,295
            Genes (coding)                    :: 3,140
            CDSs (with protein)               :: 3,140
            Genes (RNA)                       :: 119
            rRNAs                             :: 10, 10, 10 (5S, 16S, 23S)
            complete rRNAs                    :: 10, 10, 10 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 155
            CDSs (without protein)            :: 155
            Pseudo Genes (ambiguous residues) :: 0 of 155
            Pseudo Genes (frameshifted)       :: 88 of 155
            Pseudo Genes (incomplete)         :: 64 of 155
            Pseudo Genes (internal stop)      :: 34 of 155
            Pseudo Genes (multiple problems)  :: 26 of 155
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence was derived from
            CP003056.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and/or DNA are available from K. T. Shanmugam at
            shan@ufl.edu.
            Annotation Pipeline (PGAP)
            set; GeneMarkS-2+
            repeat_region
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4467
                     /organism="Bacillus coagulans 36D1"
                     /mol_type="genomic DNA"
                     /strain="36D1"
                     /culture_collection="ATCC:PTA-5827"
                     /db_xref="taxon:345219"
     gene            complement(1..1437)
                     /locus_tag="BCOA_RS20695"
                     /old_locus_tag="Bcoa_0689"
     CDS             complement(1..1437)
                     /locus_tag="BCOA_RS20695"
                     /old_locus_tag="Bcoa_0689"
                     /EC_number="3.2.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013400558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GH1"
                     /protein_id="WP_014096056.1"
                     /translation="MSKGVLPENFLWGGAVAAHQLEGGWNKGGKGVSVADVMTAGRHGV
                     PRQITDGVLEGYYYPNHEAIDFYSRYKEDIKLFAEMGFKCFRTSIAWTRIFPNGDDDEP
                     NEEGLQFYDDLFDELLKYHIEPVITLSHFELPYHLVKKYGGFRNRKCIDFFVKFSETVM
                     KRYKDKVKYWMTFNEINNQADTSMDFASFTNSGIKYEEGENRKQTMYQAALYELIASAK
                     VVKLGHKINPDFKIGCMLSFVPVYPYSCHPDDVMLATEAMHNRWFFGDVHVRGTIPDYT
                     KKYWERNGFEIEYTKEDEQILKEGTVDYIGFSYYMSKVVSAREVEDSQPDGEFGRVVRN
                     PYVQASDWGWQIDPVGLRYSLNALYERYNIPLFIVENGLGARDVIEEDGTINDDYRIQY
                     FRDHILEMKKAVELDGVDLMGYTPWGCIDLVSAGTGEMEKRYGFIYVDKDNEGNGTLER
                     KKKKSFEWYKHVIKTNGEEL"
     gene            complement(1599..2954)
                     /gene="celB"
                     /locus_tag="BCOA_RS20700"
                     /old_locus_tag="Bcoa_0690"
     CDS             complement(1599..2954)
                     /gene="celB"
                     /locus_tag="BCOA_RS20700"
                     /old_locus_tag="Bcoa_0690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013858448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gnl|TC-DB|Q72XQ0|4.A.3.2.8"
                     /protein_id="WP_014096057.1"
                     /translation="MSEQNKAFTFLERYLMGPMGKVASFRFVRAVMAAGMASIPFTIVG
                     SMFLVLNVLPQTLTFLQGFFDNTFFRISDLYMLANKATMGILALYFNLVIGYEYTKIYA
                     EEEGINVNPLNGALLSMFAFFMTIPELVAGNGKMSLIQKMNDTTHIIFGWEMGDSGVSR
                     LGSSGIFTAIIVSVIAVQLYRLCVKQNWVIKMPEAVPEGVSRSFTALIPAFLVAFVILI
                     INGIFVALGTDIFKVVAVPFSFVTNIASSWLGLMVIYFLIHALWIVGIHGANIIGAFLT
                     PITLANMEANIHGANIPFAGEFQNSFVIMGGSGSTLGLCIFIAFLARSQQLRILGKASL
                     APGIFNINEPILFGLPIVYNPYLAIPFFLAPMATATIGYFAIKLHIVAPLIAQVPWPTP
                     IGIGAFIGTGGSIMAPVVSLICGVVAFIIYLPFIRIYDKKLVEQEKGGESVL"
     gene            complement(2976..3479)
                     /locus_tag="BCOA_RS20705"
                     /old_locus_tag="Bcoa_0691"
     CDS             complement(2976..3479)
                     /locus_tag="BCOA_RS20705"
                     /old_locus_tag="Bcoa_0691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014096058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_014096058.1"
                     /translation="MNDVERALFEKNQKNQMLKSMYYNRYLLVRYVTAIFFFTNVYWLI
                     SLVVSHSLLYLLPLALIIVVILSVAEQVKIYSSPTNHAKYTKFCFMTLLIANVILLLPS
                     CFSSSFAHLYPFLINQNKSKVLILAVLIAGIFLSAFILYRLYQITHDEDKHFQRIMEYE
                     KAIR"
     gene            complement(3678..4001)
                     /locus_tag="BCOA_RS20710"
                     /old_locus_tag="Bcoa_0692"
     CDS             complement(3678..4001)
                     /locus_tag="BCOA_RS20710"
                     /old_locus_tag="Bcoa_0692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013858446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS cellobiose transporter subunit IIB"
                     /protein_id="WP_014096059.1"
                     /translation="MKKALIICAAGMSSSLMAKKTTEFFKTKGKDIEVDAVSANEGNKM
                     IEKGDFDLYLVSPQTKMYFQKLKEAGERVGKPVVNIPPQAYIPIPMGVEKLGNLILQEL
                     PND"
     gene            complement(4135..4467)
                     /locus_tag="BCOA_RS20715"
                     /old_locus_tag="Bcoa_0693"
     CDS             complement(4135..4467)
                     /locus_tag="BCOA_RS20715"
                     /old_locus_tag="Bcoa_0693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013858444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gnl|TC-DB|P46319|4.A.3.2.2"
                     /protein_id="WP_041817903.1"
                     /translation="MTLNIEEISFQIILNGGNARSLAAESINLAKAGEFKLAEQKIEEA
                     NEAMTIAHRFQTDLIKGEASGEKFEISILLIHAQDHLMNAMTVIDLAKEIIELYKKTNE
                     LECRNC"
ORIGIN
        1 ttaaagctct tctccatttg tttttatgac atgcttatac cattcaaatg actttttctt
       61 ttttctttct aaagttccgt tcccttcatt atctttgtcc acataaataa aaccgtaacg
      121 tttttccatt tctcctgttc cagcactcac taaatctata catccccacg gtgtgtaacc
      181 cattaaatca acaccgtcaa gttcaaccgc ctttttcatt tctagaatat gatcgcgaaa
      241 atattgaata cggtaatcat cgttaattgt accatcctct tcaatgacat cccgcgcgcc
      301 aagtccattt tctacaataa ataaaggaat attgtacctt tcatataaag catttaagga
      361 ataacgaagg ccgaccggat caatttgcca accccaatca ctggcttgaa cataaggatt
      421 gcgaacgacg cggccaaact ctccatcagg ctggctgtct tctacttcac gggcgctgac
      481 tactttagac atataatagc taaatccaat gtaatctact gttccttctt taagaatttg
      541 ttcatcttcc tttgtatatt caatttcaaa tccgtttctt tcccagtatt ttttcgtata
      601 atcaggaatc gtcccgcgaa catgtacatc accaaagaac caacgattat gcatcgcttc
      661 ggtggcaagc atcacatcgt ccggatgaca agaatatggg tatacaggta cgaaagaaag
      721 catacaacca atcttaaagt caggattaat tttgtggcct aatttaacga cttttgcgct
      781 ggcaattaat tcataaagcg ctgcctggta catggtttgt ttccggtttt caccttcttc
      841 atatttaatt cctgagtttg tgaagcttgc gaaatccatg ctcgtatctg cttgattatt
      901 gatttcgtta aaggtcatcc aatattttac tttatcttta taacgtttca tgactgtctc
      961 agaaaatttc acaaaaaaat caatacattt ccggttccta aaacccccat attttttcac
     1021 aagatgataa ggcaattcaa aatgagataa agtaataaca ggttcaatat gatattttaa
     1081 taattcatca aacaaatcat cgtaaaattg caaaccttct tcatttggct catcatcatc
     1141 cccgtttgga aaaattcttg tccaagcaat agaagtacgg aaacatttaa accccatttc
     1201 tgcgaacagt ttaatatctt ctttataacg ggaatagaag tcgattgctt catggttagg
     1261 ataatagtaa ccttctaata caccatccgt aatttgccgt ggaacaccat gtcttcctgc
     1321 agtcattaca tcagcaacac ttacaccttt tccgccttta ttccacccgc cttcaagctg
     1381 gtgggctgct actgctccgc cccataaaaa gttttccggt aaaacgcctt ttgacattgt
     1441 aaaccctcca tcatttatct tatttggttt cctgaacgag aaaagttaaa taagaaggcg
     1501 attttcctat gaagaaccgc cttctttcat tcacccgcag tgcaacatcg ttttcatagg
     1561 ataattctac atcttatttt tctatttcaa gattaggatc agagtacaga ttctccgcct
     1621 ttttcttgct caactaactt cttatcatat attctgatga acggaagata tatgataaac
     1681 gcgaccacac cacaaatgag tgagacaact ggcgccataa tgctcccacc tgttccaatg
     1741 aaagccccga taccgattgg cgttggccat ggcacttgtg caataagtgg cgcaacaatg
     1801 tgcaatttaa ttgcaaaata accaattgtc gcagtagcca taggcgctaa gaagaatggg
     1861 atagccaggt atggattata aacaattggt aatccaaaca atattggttc attaatatta
     1921 aaaatgccag gagcaaggga tgcttttcct agtattctca attgctgtga ccgggccaaa
     1981 aatgcaataa agatacataa tcctaaagtc gacccggaac cgcccataat gacaaatgaa
     2041 ttttggaact cgccggcgaa tggaatattt gccccatgaa tattggcttc catatttgcc
     2101 aaagtaattg gcgtcaggaa ggctccgata atattcgccc cgtgaatacc tacgatccag
     2161 agtgcatgga ttaagaagta aatcaccatc aatcccagcc agctgcttgc gatattcgta
     2221 acaaagctaa atggaacagc gacaacttta aatatatctg tacctaaagc tacaaaaata
     2281 ccattgatga ttaagatcac aaaagcgact aaaaatgcag ggattaaagc tgtgaacgat
     2341 ctggataccc cttccggaac agcttccggc attttaatca cccaattttg ttttacacat
     2401 aaccggtaca actggacagc aataacagaa acaataatgg ccgtaaatat acctgaagaa
     2461 cctaaacggc ttacaccact gtcgcccatt tcccaaccaa aaataatatg agtcgtatca
     2521 ttcatttttt ggataagtga catttttcca ttgcctgcaa ccaattccgg aatcgtcata
     2581 aagaaagcaa acatggataa taaagcccca tttagcgggt ttacatttat cccttcttct
     2641 tcagcatata tttttgtata ctcataacca ataacaaggt tgaaatataa tgctaaaatt
     2701 cccattgttg ctttatttgc cagcatatac aagtcactaa ttctaaagaa agtattatcg
     2761 aaaaagcctt gcaaaaatgt taaagtctgt ggcaatacgt tcaacaccaa gaacatggat
     2821 cctacgattg taaatggtat tgaagccatc ccggcagcca ttaccgcccg gacaaatcga
     2881 aaagatgcta ctttccccat aggacccatc agataccttt caagaaaagt aaatgcctta
     2941 ttttgttctg acataaagac ccctcttttc tattattaac gaatcgcttt ttcatactcc
     3001 atgatgcgtt gaaaatgctt gtcttcatca tgtgtaattt ggtataaccg ataaaggatg
     3061 aaagcgctta aaaatatccc ggcaatcaaa acagctaaaa ttaatacttt tgacttattt
     3121 tgattgatta aaaatggata taaatgagcg aaagatgacg aaaaacaact tggcaacagc
     3181 aaaatcacat ttgcaatgag caaagtcata aaacaaaact ttgtgtattt agcatgattt
     3241 gtcgggctgc tataaatctt tacttgttcc gcaacgctca atatgacaac gatgatcaac
     3301 gccaatggaa gaaggtatag taacgaatga ctcacgacca atgaaattaa ccaatataca
     3361 tttgtaaaga agaatattgc ggtaacatat ctgacaagca aataccggtt atagtacatc
     3421 gatttaagca tttggttttt ttgatttttt tcaaataatg ctctttctac gtcattcata
     3481 aaaatccctc atttattaaa aatatggctc cccgctactc gttaaagctt aagctatcca
     3541 ttacctccaa tccaaaagac atcttatcgg gtatcttgct tgaagatcac cttccttccg
     3601 actatccata aattttggca tttccgggtg agtgcattgt aaatagcgaa gacccatttt
     3661 ttaatcacat aagcaaatca atcatttggc agttcttgca agattaaatt tcctaatttt
     3721 tcaacaccca ttggaatcgg aatataggct tgcggcggaa tgtttacaac tggctttcct
     3781 acgcgttctc cggcttcctt aagcttttga aaatacatct ttgtttgtgg gctgactaaa
     3841 tataaatcaa agtccccctt ttcaatcatc ttattgcctt catttgctga gacagcatcc
     3901 acttcaatat ccttaccttt tgttttaaaa aattcagttg tcttcttcgc cattaaagaa
     3961 gatgacatgc ctgctgcaca aataattaat gcttttttca ttataaatgc ctccaattgg
     4021 ttttttattg tgatttaaac ttgcttatca atgaattaat gacttccgtt gcttttaatg
     4081 gcccgcttgt gccgccaatc atacattttt caaacagcaa acttggcaaa tttgttagca
     4141 atttcgacat tcaagttcat ttgttttttt ataaagttca atgatttctt ttgccaggtc
     4201 aatcactgtc atggcattca ttaaatggtc ctgtgcgtgt ataagcaata tactgatttc
     4261 gaatttctcc ccactggcct ccccctttat taggtctgtt tgaaaacgat gagcgattgt
     4321 catggcttcg ttggcttctt caattttttg ttcagctaat ttaaactcac ctgctttagc
     4381 aagatttatg gactccgcag ctaagcttcg ggcatttccg ccatttaaaa taatttgaaa
     4441 actaatttct tctatgttca atgtcat
//
