# hmmscan :: search sequence(s) against a profile database # HMMER 3.3.2 (Nov 2020); http://hmmer.org/ # Copyright (C) 2020 Howard Hughes Medical Institute. # Freely distributed under the BSD open source license. # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: /array2/siva/dbcansub_update/cazy2025/match_results/dbsub_data_2025/merged_clusters/CBM48/fasta_for_each_cluster/cluster_76.txt # target HMM database: merged_hmms/CBM48.hmm # per-dom hits tabular output: hmmscan_out/domain_result/CBM48/CBM48_cluster_76.out.dm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: QHS54857.1|CBM48 [L=437] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.8e-08 20.2 0.0 9.3e-08 18.9 0.0 1.6 1 CBM48.hmm Domain annotation for each model (and alignments): >> CBM48.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.9 0.0 9.3e-08 9.3e-08 18 67 .. 367 421 .. 350 429 .. 0.77 Alignments for each domain: == domain 1 score: 18.9 bits; conditional E-value: 9.3e-08 CBM48.hmm 18 PtAesVelvgdfnd...trvpmt..s.vWeatv..lppgarYkyrvdggdgklllDPy 67 +A++V++ g+fnd ++ +m + W ++ + + Yk+ vdg++ DP QHS54857.1|CBM48 367 ENAKEVYVAGSFNDwdqHASQMLrkGnKWVVVTetEQGKTTYKFIVDGKWI---SDPG 421 69***********9964224555775799999985555567*******854...5775 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (437 residues searched) Target model(s): 1 (76 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 43.09 // Query: ACB77696.1|CBM48 [L=98] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.1e-13 35.5 0.1 7.5e-13 35.2 0.1 1.1 1 CBM48.hmm Domain annotation for each model (and alignments): >> CBM48.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 35.2 0.1 7.5e-13 7.5e-13 13 71 .. 20 84 .. 13 89 .. 0.83 Alignments for each domain: == domain 1 score: 35.2 bits; conditional E-value: 7.5e-13 CBM48.hmm 13 frvwaPtAesVelvgdfnd...trvpmt....svWeatv.lppgar.YkyrvdggdgklllDPyavea 71 f P A++V + g+fnd + +m + We++v lppg Y ++vdg++ +DP a+e+ ACB77696.1|CBM48 20 FTYLDPLATTVFVAGSFNDwkpDAAAMIqvipGRWELEVsLPPGRHeYLFVVDGKWV---VDPTAKET 84 78889**************97733566678755*******8888745*******866...9***9986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (98 residues searched) Target model(s): 1 (76 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 20.69 // Query: QNA43388.1|CBM48 [L=434] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-10 27.6 0.0 4.5e-10 26.3 0.0 1.6 1 CBM48.hmm Domain annotation for each model (and alignments): >> CBM48.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.3 0.0 4.5e-10 4.5e-10 8 68 .. 352 417 .. 343 425 .. 0.82 Alignments for each domain: == domain 1 score: 26.3 bits; conditional E-value: 4.5e-10 CBM48.hmm 8 gqgvtfrvw.aPtAesVelvgdfnd...trvpmt..s.vWeatv.lppgar.YkyrvdggdgklllDPya 68 + +vtfr+ +A++V++ g+fn+ + +m+ + W ++ ++pg+ Yk+++dg++ +DP QNA43388.1|CBM48 352 T-KVTFRLKgYANAKEVSVAGSFNEwsaSSAKMKrqGdEWIVETiAEPGKHmYKFVIDGQWI---IDPGN 417 5.3888888667************99864489999758******99999978*******966...78854 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (434 residues searched) Target model(s): 1 (76 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 80.34 // Query: QGY46510.1|CBM48 [L=430] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (430 residues searched) Target model(s): 1 (76 nodes) Passed MSV filter: 0 (0); expected 0.0 (0.02) Passed bias filter: 0 (0); expected 0.0 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 205.39 // [ok]