# hmmscan :: search sequence(s) against a profile database # HMMER 3.3.2 (Nov 2020); http://hmmer.org/ # Copyright (C) 2020 Howard Hughes Medical Institute. # Freely distributed under the BSD open source license. # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: /array2/siva/dbcansub_update/cazy2025/match_results/dbsub_data_2025/merged_clusters/CBM48/fasta_for_each_cluster/cluster_53.txt # target HMM database: merged_hmms/CBM48.hmm # per-dom hits tabular output: hmmscan_out/domain_result/CBM48/CBM48_cluster_53.out.dm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: QQE13657.1|CBM48 [L=450] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.7e-10 27.0 0.1 6.3e-10 25.9 0.1 1.6 1 CBM48.hmm Domain annotation for each model (and alignments): >> CBM48.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.9 0.1 6.3e-10 6.3e-10 24 68 .. 375 426 .. 357 437 .. 0.76 Alignments for each domain: == domain 1 score: 25.9 bits; conditional E-value: 6.3e-10 CBM48.hmm 24 elvgdfnd...trvpmt...s..vWeatv.lppgarYkyrvd..ggdgklllDPya 68 ++ dfnd + pm+ + +W+a+v +ppg rY+yr+ g++ + DPy QQE13657.1|CBM48 375 AIAADFNDwnpSKTPMSrdaNlgIWQAVVkVPPG-RYRYRLVydGEW---KQDPYN 426 45589999987558****87366***********.999999631554...48***4 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (450 residues searched) Target model(s): 1 (76 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 55.18 // Query: QDU35587.1|CBM48 [L=450] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.3e-10 25.7 0.1 1.7e-09 24.5 0.1 1.5 1 CBM48.hmm Domain annotation for each model (and alignments): >> CBM48.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.5 0.1 1.7e-09 1.7e-09 21 67 .. 370 423 .. 367 443 .. 0.74 Alignments for each domain: == domain 1 score: 24.5 bits; conditional E-value: 1.7e-09 CBM48.hmm 21 esVelvgdfnd...trvpmt...s..vWeatv.lppgarYkyrv..dggdgklllDPy 67 +V++ dfnd + pm+ + +W+a+v +ppg rY+yr+ dg++ DP QDU35587.1|CBM48 370 GNVAIAADFNDwnpSQTPMSrdkNlgIWQAVVkVPPG-RYRYRLvfDGEWK---QDPH 423 5789999***9987458****87366*******9999.7777773367765...5664 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (450 residues searched) Target model(s): 1 (76 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 79.69 // Query: QNN22604.1|CBM48 [L=571] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.3e-11 30.5 0.1 4.6e-11 29.5 0.1 1.5 1 CBM48.hmm Domain annotation for each model (and alignments): >> CBM48.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.5 0.1 4.6e-11 4.6e-11 4 69 .. 480 554 .. 477 561 .. 0.73 Alignments for each domain: == domain 1 score: 29.5 bits; conditional E-value: 4.6e-11 CBM48.hmm 4 Gahl.gq.gvtfrvwaPtAesVelvgdfnd...trvpmt...s..vWeatv.lppgar.YkyrvdggdgklllDPyav 69 Ga++ +q + + +A++ + gdfn+ + p++ + vW++ v lppg + Y+++vdg+++ DPy + QNN22604.1|CBM48 480 GASVtTQgTLFVQPHSDGAKRLCIAGDFNEwssVATPLQfnrKlnVWQTCVpLPPGRYrYRLVVDGKWS---SDPYNR 554 6666533224455668899999999****9987447999986367*******99995447777789988...9***65 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (571 residues searched) Target model(s): 1 (76 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 93.32 // Query: AQT67136.1|CBM48 [L=397] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-14 40.8 0.3 2.7e-14 39.9 0.3 1.4 1 CBM48.hmm Domain annotation for each model (and alignments): >> CBM48.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 39.9 0.3 2.7e-14 2.7e-14 8 69 .. 314 380 .. 305 387 .. 0.79 Alignments for each domain: == domain 1 score: 39.9 bits; conditional E-value: 2.7e-14 CBM48.hmm 8 gqgvtfrvwaPtAesVelvgdfnd...trvpmt...s.vWeatv.lppgar.YkyrvdggdgklllDPyav 69 + +v f P Ae+V++ gdfn+ ++ pm+ + +W++++ l +g + Y+ +vdg+++ DPy + AQT67136.1|CBM48 314 D-AVVFVSLYPRAEEVQIAGDFNGwqpEKTPMQkgeDgTWHVKLpLAAGRYrYRMVVDGQWQ---QDPYNE 380 3.49999999*************9987668****7637******988885347777799988...9***54 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (397 residues searched) Target model(s): 1 (76 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 83.68 // Query: QDU70233.1|CBM48 [L=433] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.5e-11 28.6 0.2 1.7e-10 27.7 0.2 1.4 1 CBM48.hmm Domain annotation for each model (and alignments): >> CBM48.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.7 0.2 1.7e-10 1.7e-10 11 69 .. 351 416 .. 341 423 .. 0.74 Alignments for each domain: == domain 1 score: 27.7 bits; conditional E-value: 1.7e-10 CBM48.hmm 11 vtfrvwaPtAesVelvgdfnd...trvpmt...s..vWeatv.lppgarYkyrv..dggdgklllDPyav 69 f a +A + e+ dfn+ + pm+ + vW++ v l pg +Ykyr+ dg + DPy QDU70233.1|CBM48 351 LLFVQPANGAAKLEIAADFNNwnpALTPMKrddNlgVWQVQVpLAPG-EYKYRLvaDGRWY---NDPYNP 416 5566668899999*******9976337****86367******99999.6666662267766...7***54 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (433 residues searched) Target model(s): 1 (76 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 91.69 // Query: QOV90613.1|CBM48 [L=475] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-10 27.8 0.1 3.1e-10 26.8 0.1 1.4 1 CBM48.hmm Domain annotation for each model (and alignments): >> CBM48.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.8 0.1 3.1e-10 3.1e-10 7 69 .. 389 458 .. 383 465 .. 0.78 Alignments for each domain: == domain 1 score: 26.8 bits; conditional E-value: 3.1e-10 CBM48.hmm 7 l..gqgvtfrvwaPtAesVelvgdfnd...trvpmt...s.vWeatv.lppgar.YkyrvdggdgklllDPyav 69 + gv f++ +A++V + gdfn+ + pm + W+ ++ l+ g + Y+++vdg+++ +DP + QOV90613.1|CBM48 389 QldD-GVVFSARFDSARQVLIAGDFNNwlpMSTPMVrtpGvGWSMKLpLSRGRYrYRFVVDGKWQ---TDPFNQ 458 4444.79999999************99866334777965599*****988887569999***999...999844 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (475 residues searched) Target model(s): 1 (76 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 100.11 // [ok]