# hmmscan :: search sequence(s) against a profile database # HMMER 3.3.2 (Nov 2020); http://hmmer.org/ # Copyright (C) 2020 Howard Hughes Medical Institute. # Freely distributed under the BSD open source license. # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: /array2/siva/dbcansub_update/cazy2025/match_results/dbsub_data_2025/merged_clusters/CBM48/fasta_for_each_cluster/cluster_195.txt # target HMM database: merged_hmms/CBM48.hmm # per-dom hits tabular output: hmmscan_out/domain_result/CBM48/CBM48_cluster_195.out.dm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 242|MospKOD1030_1_GeneCatalog_proteins_20210506.aa.fasta|CBM48 [L=814] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.3e-06 14.5 0.1 6.4e-06 13.0 0.1 1.7 1 CBM48.hmm Domain annotation for each model (and alignments): >> CBM48.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.0 0.1 6.4e-06 6.4e-06 15 59 .. 737 789 .. 735 806 .. 0.80 Alignments for each domain: == domain 1 score: 13.0 bits; conditional E-value: 6.4e-06 CBM48.hmm 15 vwaPtAesVelvgdfnd..trvpmt..s.vWeatv.lppgar..Yky 53 vw + +sV++ g+f++ ++v+++ + +eatv l+ ++ +k+ 242|MospKOD1030_1_GeneCatalog_proteins_20210506.aa.fasta|CBM48 737 VWNHSGQSVKVTGTFDNwkASVDLKknDdAFEATVdLDRSKVihFKF 783 8999***********88877799**9747******854444345*** PP CBM48.hmm 54 rvdggd 59 +vdg++ 242|MospKOD1030_1_GeneCatalog_proteins_20210506.aa.fasta|CBM48 784 VVDGQW 789 ****85 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (814 residues searched) Target model(s): 1 (76 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 89.82 // Query: 4514|MoalAD071_1_GeneCatalog_proteins_20210416.aa.fasta|CBM48 [L=204] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (204 residues searched) Target model(s): 1 (76 nodes) Passed MSV filter: 0 (0); expected 0.0 (0.02) Passed bias filter: 0 (0); expected 0.0 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 89.67 // Query: 9921|MoalAD072_1_GeneCatalog_proteins_20210424.aa.fasta|CBM48 [L=201] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (201 residues searched) Target model(s): 1 (76 nodes) Passed MSV filter: 0 (0); expected 0.0 (0.02) Passed bias filter: 0 (0); expected 0.0 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 101.77 // Query: 958|MoalCK1249_1_GeneCatalog_proteins_20210510.aa.fasta|CBM48 [L=192] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (192 residues searched) Target model(s): 1 (76 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 0 (0); expected 0.0 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 95.68 // Query: 143740|Jimfl_GMNB39_1_GeneCatalog_proteins_20180904.aa.fasta|CBM48 [L=387] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.1e-07 15.9 0.0 1.6e-06 14.9 0.0 1.4 1 CBM48.hmm Domain annotation for each model (and alignments): >> CBM48.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.9 0.0 1.6e-06 1.6e-06 22 67 .. 29 79 .. 26 86 .. 0.81 Alignments for each domain: == domain 1 score: 14.9 bits; conditional E-value: 1.6e-06 CBM48.hmm 22 sVelvgdfnd.trvpmt...s.vWeatv...lppgarYkyrvdgg 58 sV+l+gdfn+ + +pm+ + + + + +++a+ k++vdg+ 143740|Jimfl_GMNB39_1_GeneCatalog_proteins_20180904.aa.fasta|CBM48 29 SVQLCGDFNNwQGYPMErqdDgSFVCYItrdKTKDAQMKFVVDGQ 73 8*********8779****8636888888875588888*******8 PP CBM48.hmm 59 dgklllDPy 67 + DP 143740|Jimfl_GMNB39_1_GeneCatalog_proteins_20180904.aa.fasta|CBM48 74 WL---CDPS 79 54...6875 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (387 residues searched) Target model(s): 1 (76 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 76.84 // Query: 477843|Jimfl_AD_1_GeneCatalog_proteins_20180815.aa.fasta|CBM48 [L=377] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.6e-07 16.0 0.0 1.5e-06 15.0 0.0 1.4 1 CBM48.hmm Domain annotation for each model (and alignments): >> CBM48.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.0 0.0 1.5e-06 1.5e-06 22 67 .. 29 79 .. 26 87 .. 0.81 Alignments for each domain: == domain 1 score: 15.0 bits; conditional E-value: 1.5e-06 CBM48.hmm 22 sVelvgdfnd.trvpmt...s.vWeatv...lppgarYkyrvdggdgkl 62 sV+l+gdfn+ + +pm+ + + + + +++a+ k++vdg++ 477843|Jimfl_AD_1_GeneCatalog_proteins_20180815.aa.fasta|CBM48 29 SVQLCGDFNNwQGYPMErqdDgSFVCYItrdKTKDAQMKFVVDGQWL-- 75 8*********8779****8636888888875588888*******854.. PP CBM48.hmm 63 llDPy 67 DP 477843|Jimfl_AD_1_GeneCatalog_proteins_20180815.aa.fasta|CBM48 76 -CDPS 79 .6885 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (377 residues searched) Target model(s): 1 (76 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 77.92 // Query: 1557495|Copph3_GeneCatalog_proteins_20190117.aa.fasta|CBM48 [L=509] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (509 residues searched) Target model(s): 1 (76 nodes) Passed MSV filter: 0 (0); expected 0.0 (0.02) Passed bias filter: 0 (0); expected 0.0 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 258.65 // [ok]