# hmmscan :: search sequence(s) against a profile database # HMMER 3.3.2 (Nov 2020); http://hmmer.org/ # Copyright (C) 2020 Howard Hughes Medical Institute. # Freely distributed under the BSD open source license. # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: /array2/siva/dbcansub_update/cazy2025/match_results/dbsub_data_2025/merged_clusters/CBM48/fasta_for_each_cluster/cluster_176.txt # target HMM database: merged_hmms/CBM48.hmm # per-dom hits tabular output: hmmscan_out/domain_result/CBM48/CBM48_cluster_176.out.dm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 667610|Lepor2_GeneCatalog_proteins_20171210.aa.fasta|CBM48 [L=657] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-06 15.2 0.1 2.5e-06 14.3 0.1 1.4 1 CBM48.hmm Domain annotation for each model (and alignments): >> CBM48.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.3 0.1 2.5e-06 2.5e-06 16 60 .. 183 236 .. 180 286 .. 0.83 Alignments for each domain: == domain 1 score: 14.3 bits; conditional E-value: 2.5e-06 CBM48.hmm 16 waPtAesVelvgdfnd..trvpmt..s.vWeatv....lppgarYkyrvdg 57 w A++V + g+f+d +++ ++ + v++ ++ ++ +Yk++vdg 667610|Lepor2_GeneCatalog_proteins_20171210.aa.fasta|CBM48 183 WEHPATEVFVTGTFDDwfKTILLDevGdVFAKEIllplSTEKIYYKFVVDG 233 8888**********88997788999967******9653366678******9 PP CBM48.hmm 58 gdg 60 + 667610|Lepor2_GeneCatalog_proteins_20171210.aa.fasta|CBM48 234 YWT 236 765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (657 residues searched) Target model(s): 1 (76 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 75.91 // Query: 13381|Ocuya1_GeneCatalog_proteins_20220708.aa.fasta|CBM48 [L=1813] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-07 18.5 0.7 4.1e-07 16.9 0.7 1.8 1 CBM48.hmm Domain annotation for each model (and alignments): >> CBM48.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.9 0.7 4.1e-07 4.1e-07 20 70 .. 57 117 .. 49 124 .. 0.78 Alignments for each domain: == domain 1 score: 16.9 bits; conditional E-value: 4.1e-07 CBM48.hmm 20 AesVelvgdfnd..trvpmt..s.vWeatv.....lppgarYkyrvdggdgk 61 A++V + g+f+ +++++ + v++a v + ++ +Yk++vdg++ 13381|Ocuya1_GeneCatalog_proteins_20220708.aa.fasta|CBM48 57 ASEVFVTGTFDYwlVSYKLKedGgVFTADVvlddhAAENVYYKFVVDGNWTV 108 89********66987799999747******98544355556*******9665 PP CBM48.hmm 62 lllDPyave 70 D y + 13381|Ocuya1_GeneCatalog_proteins_20220708.aa.fasta|CBM48 109 NANDQYELN 117 566888654 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1813 residues searched) Target model(s): 1 (76 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 163.83 // Query: 14411|CadmalM221_1_GeneCatalog_proteins_20220609.aa.fasta|CBM48 [L=1537] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1537 residues searched) Target model(s): 1 (76 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 260.44 // Query: 260595|Umbra1_GeneCatalog_proteins_20121109.aa.fasta|CBM48 [L=153] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-10 28.0 0.1 2e-10 27.5 0.1 1.2 1 CBM48.hmm Domain annotation for each model (and alignments): >> CBM48.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.5 0.1 2e-10 2e-10 11 61 .. 9 76 .. 3 92 .. 0.78 Alignments for each domain: == domain 1 score: 27.5 bits; conditional E-value: 2e-10 CBM48.hmm 11 vtfrvwaPtAesVelvgdfnd...trvpmt...s.vWeatv....lppgar.. 50 tf aP+A+sV + g+f++ t ++ + ++atv +pg++ 260595|Umbra1_GeneCatalog_proteins_20121109.aa.fasta|CBM48 9 HTFTYTAPEAKSVLVTGTFDNwskT-QVLDfvnNgMFTATVqipyETPGQDil 60 5899***************888753.235566746*******87669999888 PP CBM48.hmm 51 Ykyrvdggdg.....k 61 Yky+vd ++ 260595|Umbra1_GeneCatalog_proteins_20121109.aa.fasta|CBM48 61 YKYVVDEHWLtdsktE 76 ******9754655443 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (153 residues searched) Target model(s): 1 (76 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 37.98 // Query: 319379|Umbsp_AD052_1_GeneCatalog_proteins_20160912.aa.fasta|CBM48 [L=299] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.8e-11 28.4 0.2 2.3e-10 27.2 0.2 1.6 1 CBM48.hmm Domain annotation for each model (and alignments): >> CBM48.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.2 0.2 2.3e-10 2.3e-10 11 61 .. 9 74 .. 3 89 .. 0.78 Alignments for each domain: == domain 1 score: 27.2 bits; conditional E-value: 2.3e-10 CBM48.hmm 11 vtfrvwaPtAesVelvgdfnd...trvpmt...s.vWeatv....l 45 tf aP+A+sV + g+f++ t ++ + v++atv 319379|Umbsp_AD052_1_GeneCatalog_proteins_20160912.aa.fasta|CBM48 9 HTFTYTAPEAKSVLVTGTFDNwskT-QVLDfvnNgVFTATVqipyE 53 5899***************888753.235566746*******8665 PP CBM48.hmm 46 ppgar..Ykyrvdggdg...k 61 ++g++ Yky+vd+++ k 319379|Umbsp_AD052_1_GeneCatalog_proteins_20160912.aa.fasta|CBM48 54 TAGQDilYKYVVDDHWLtdsK 74 8998788******98545442 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (299 residues searched) Target model(s): 1 (76 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 73.41 // [ok]