# hmmscan :: search sequence(s) against a profile database # HMMER 3.3.2 (Nov 2020); http://hmmer.org/ # Copyright (C) 2020 Howard Hughes Medical Institute. # Freely distributed under the BSD open source license. # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: /array2/siva/dbcansub_update/cazy2025/match_results/dbsub_data_2025/merged_clusters/CBM48/fasta_for_each_cluster/cluster_10.txt # target HMM database: merged_hmms/CBM48.hmm # per-dom hits tabular output: hmmscan_out/domain_result/CBM48/CBM48_cluster_10.out.dm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: ALO60501.1|CBM48 [L=740] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-07 18.8 0.4 2.7e-07 17.4 0.4 1.6 1 CBM48.hmm Domain annotation for each model (and alignments): >> CBM48.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.4 0.4 2.7e-07 2.7e-07 16 65 .. 11 69 .. 6 86 .. 0.80 Alignments for each domain: == domain 1 score: 17.4 bits; conditional E-value: 2.7e-07 CBM48.hmm 16 waPtAesVelvgdfnd...trvpmt...s.vWeatv..l.ppgarYkyrvdggdgklllD 65 w +A++V + g+fnd t+ p++ + + a v + ++ + +ky+vdg++ ++ D ALO60501.1|CBM48 11 WGAGAQTVCVAGNFNDwsaTATPLKkqsDgSFLADVsvPwGEKQAFKYVVDGEWK-VRED 69 8899************998668****8637******953466777*******965.3333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (740 residues searched) Target model(s): 1 (76 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 60.52 // Query: AGV14155.1|CBM48 [L=716] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-08 21.2 0.4 4.6e-08 19.9 0.4 1.6 1 CBM48.hmm Domain annotation for each model (and alignments): >> CBM48.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.9 0.4 4.6e-08 4.6e-08 16 65 .. 11 69 .. 6 87 .. 0.80 Alignments for each domain: == domain 1 score: 19.9 bits; conditional E-value: 4.6e-08 CBM48.hmm 16 waPtAesVelvgdfnd...trvpmt...s.vWeatv..l.ppgarYkyrvdggdgklllD 65 w +A++V + g+fnd t+ p++ + + a+v + ++ + +ky+vdg++ ++ D AGV14155.1|CBM48 11 WGAGAQTVCVAGNFNDwsaTATPLKkqsDgSFMAEVsvPwGEKQAFKYVVDGEWK-VRED 69 8899************998668****8637******953466677*******966.3333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (716 residues searched) Target model(s): 1 (76 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 95.32 // Query: AAW42516.2|CBM48 [L=765] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-07 18.7 0.4 2.9e-07 17.3 0.4 1.6 1 CBM48.hmm Domain annotation for each model (and alignments): >> CBM48.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.3 0.4 2.9e-07 2.9e-07 16 65 .. 11 69 .. 6 86 .. 0.80 Alignments for each domain: == domain 1 score: 17.3 bits; conditional E-value: 2.9e-07 CBM48.hmm 16 waPtAesVelvgdfnd...trvpmt...s.vWeatv..l.ppgarYkyrvdggdgklllD 65 w +A++V + g+fnd t+ p++ + + a v + ++ + +ky+vdg++ ++ D AAW42516.2|CBM48 11 WGAGAQTVCVAGNFNDwsaTATPLKkqsDgSFLADVsvPwGEKQAFKYVVDGEWK-VRED 69 8899************998668****8637******953466777*******965.3333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (765 residues searched) Target model(s): 1 (76 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 119.92 // Query: AFR93698.2|CBM48 [L=741] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-08 21.1 0.4 4.8e-08 19.8 0.4 1.6 1 CBM48.hmm Domain annotation for each model (and alignments): >> CBM48.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.8 0.4 4.8e-08 4.8e-08 16 65 .. 11 69 .. 6 87 .. 0.80 Alignments for each domain: == domain 1 score: 19.8 bits; conditional E-value: 4.8e-08 CBM48.hmm 16 waPtAesVelvgdfnd...trvpmt...s.vWeatv..l.ppgarYkyrvdggdgklllD 65 w +A++V + g+fnd t+ p++ + + a+v + ++ + +ky+vdg++ ++ D AFR93698.2|CBM48 11 WGAGAQTVCVAGNFNDwsaTATPLKkqsDgSFMAEVsvPwGEKQAFKYVVDGEWK-VRED 69 8899************998668****8637******953466677*******966.3333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (741 residues searched) Target model(s): 1 (76 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 109.70 // Query: AUB23268.1|CBM48 [L=741] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-08 21.1 0.4 4.8e-08 19.8 0.4 1.6 1 CBM48.hmm Domain annotation for each model (and alignments): >> CBM48.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.8 0.4 4.8e-08 4.8e-08 16 65 .. 11 69 .. 6 87 .. 0.80 Alignments for each domain: == domain 1 score: 19.8 bits; conditional E-value: 4.8e-08 CBM48.hmm 16 waPtAesVelvgdfnd...trvpmt...s.vWeatv..l.ppgarYkyrvdggdgklllD 65 w +A++V + g+fnd t+ p++ + + a+v + ++ + +ky+vdg++ ++ D AUB23268.1|CBM48 11 WGAGAQTVCVAGNFNDwsaTATPLKkqsDgSFMAEVsvPwGEKQAFKYVVDGEWK-VRED 69 8899************998668****8637******953466677*******966.3333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (741 residues searched) Target model(s): 1 (76 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 121.01 // Query: ADV21302.1|CBM48 [L=735] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.2e-08 20.0 0.3 1.1e-07 18.7 0.3 1.6 1 CBM48.hmm Domain annotation for each model (and alignments): >> CBM48.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.7 0.3 1.1e-07 1.1e-07 16 65 .. 11 69 .. 6 86 .. 0.79 Alignments for each domain: == domain 1 score: 18.7 bits; conditional E-value: 1.1e-07 CBM48.hmm 16 waPtAesVelvgdfnd...trvpmt...s.vWeatv.l..ppgarYkyrvdggdgklllD 65 w +A++V + g+fnd t+ p++ + + a+v l ++ + +ky+vdg++ ++ D ADV21302.1|CBM48 11 WGAGAQTVCVAGNFNDwsaTATPLKkqpDgSFLAEVsLpwGEKQAFKYVVDGEWK-VRED 69 8899************998668***98747******952466677*******965.3333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (735 residues searched) Target model(s): 1 (76 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 122.11 // Query: AUB23269.1|CBM48 [L=716] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-08 21.2 0.4 4.6e-08 19.9 0.4 1.6 1 CBM48.hmm Domain annotation for each model (and alignments): >> CBM48.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.9 0.4 4.6e-08 4.6e-08 16 65 .. 11 69 .. 6 87 .. 0.80 Alignments for each domain: == domain 1 score: 19.9 bits; conditional E-value: 4.6e-08 CBM48.hmm 16 waPtAesVelvgdfnd...trvpmt...s.vWeatv..l.ppgarYkyrvdggdgklllD 65 w +A++V + g+fnd t+ p++ + + a+v + ++ + +ky+vdg++ ++ D AUB23269.1|CBM48 11 WGAGAQTVCVAGNFNDwsaTATPLKkqsDgSFMAEVsvPwGEKQAFKYVVDGEWK-VRED 69 8899************998668****8637******953466677*******966.3333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (716 residues searched) Target model(s): 1 (76 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 127.87 // Query: CAR29276.1|CBM48 [L=1273] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1273 residues searched) Target model(s): 1 (76 nodes) Passed MSV filter: 0 (0); expected 0.0 (0.02) Passed bias filter: 0 (0); expected 0.0 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 584.61 // Query: AFR93698.1|CBM48 [L=741] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-08 21.1 0.4 4.8e-08 19.8 0.4 1.6 1 CBM48.hmm Domain annotation for each model (and alignments): >> CBM48.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.8 0.4 4.8e-08 4.8e-08 16 65 .. 11 69 .. 6 87 .. 0.80 Alignments for each domain: == domain 1 score: 19.8 bits; conditional E-value: 4.8e-08 CBM48.hmm 16 waPtAesVelvgdfnd...trvpmt...s.vWeatv..l.ppgarYkyrvdggdgklllD 65 w +A++V + g+fnd t+ p++ + + a+v + ++ + +ky+vdg++ ++ D AFR93698.1|CBM48 11 WGAGAQTVCVAGNFNDwsaTATPLKkqsDgSFMAEVsvPwGEKQAFKYVVDGEWK-VRED 69 8899************998668****8637******953466677*******966.3333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (741 residues searched) Target model(s): 1 (76 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 111.64 // Query: AAW42516.1|CBM48 [L=765] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-07 18.7 0.4 2.9e-07 17.3 0.4 1.6 1 CBM48.hmm Domain annotation for each model (and alignments): >> CBM48.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.3 0.4 2.9e-07 2.9e-07 16 65 .. 11 69 .. 6 86 .. 0.80 Alignments for each domain: == domain 1 score: 17.3 bits; conditional E-value: 2.9e-07 CBM48.hmm 16 waPtAesVelvgdfnd...trvpmt...s.vWeatv..l.ppgarYkyrvdggdgklllD 65 w +A++V + g+fnd t+ p++ + + a v + ++ + +ky+vdg++ ++ D AAW42516.1|CBM48 11 WGAGAQTVCVAGNFNDwsaTATPLKkqsDgSFLADVsvPwGEKQAFKYVVDGEWK-VRED 69 8899************998668****8637******953466777*******965.3333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (765 residues searched) Target model(s): 1 (76 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 112.41 // Query: 3439|Cryne_JEC21_1_GeneCatalog_proteins_20120305.aa.fasta|CBM48 [L=794] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-07 18.6 0.4 3e-07 17.3 0.4 1.6 1 CBM48.hmm Domain annotation for each model (and alignments): >> CBM48.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.3 0.4 3e-07 3e-07 16 65 .. 11 69 .. 6 86 .. 0.80 Alignments for each domain: == domain 1 score: 17.3 bits; conditional E-value: 3e-07 CBM48.hmm 16 waPtAesVelvgdfnd...trvpmt...s.vWeatv..l.ppgarYky 53 w +A++V + g+fnd t+ p++ + + a v + ++ + +ky 3439|Cryne_JEC21_1_GeneCatalog_proteins_20120305.aa.fasta|CBM48 11 WGAGAQTVCVAGNFNDwsaTATPLKkqsDgSFLADVsvPwGEKQAFKY 58 8899************998668****8637******953466777*** PP CBM48.hmm 54 rvdggdgklllD 65 +vdg++ ++ D 3439|Cryne_JEC21_1_GeneCatalog_proteins_20120305.aa.fasta|CBM48 59 VVDGEWK-VRED 69 ****965.3333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (794 residues searched) Target model(s): 1 (76 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 129.01 // Query: UOH79902.1|CBM48 [L=765] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.9e-08 20.5 0.3 7.1e-08 19.3 0.3 1.6 1 CBM48.hmm Domain annotation for each model (and alignments): >> CBM48.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.3 0.3 7.1e-08 7.1e-08 16 65 .. 11 69 .. 6 87 .. 0.80 Alignments for each domain: == domain 1 score: 19.3 bits; conditional E-value: 7.1e-08 CBM48.hmm 16 waPtAesVelvgdfnd...trvpmt...s.vWeatv..l.ppgarYkyrvdggdgklllD 65 w +A++V + g+fnd t+ p++ + + a++ + ++ + +ky+vdg++ ++ D UOH79902.1|CBM48 11 WGAGAQTVCVAGNFNDwsaTATPLKkqsDgSFMAEIsvPwGEKQAFKYVVDGEWK-VRED 69 8899************998668****8637******953466677*******966.3333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (765 residues searched) Target model(s): 1 (76 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 106.14 // [ok]