# hmmscan :: search sequence(s) against a profile database # HMMER 3.3.2 (Nov 2020); http://hmmer.org/ # Copyright (C) 2020 Howard Hughes Medical Institute. # Freely distributed under the BSD open source license. # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: /array2/siva/dbcansub_update/cazy2025/match_results/dbsub_data_2025/merged_clusters/CBM47/fasta_for_each_cluster/cluster_59.txt # target HMM database: merged_hmms/CBM47.hmm # per-dom hits tabular output: hmmscan_out/domain_result/CBM47/CBM47_cluster_59.out.dm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: QTD37841.1|CBM47 [L=1448] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.9e-31 93.2 1.8 2e-30 91.5 1.8 2.0 1 CBM47.hmm Domain annotation for each model (and alignments): >> CBM47.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 91.5 1.8 2e-30 2e-30 9 128 .] 310 422 .. 295 422 .. 0.84 Alignments for each domain: == domain 1 score: 91.5 bits; conditional E-value: 2e-30 CBM47.hmm 9 egaaaravDgnkdgnfnsgscshTkeesnpWWqvDLgkeykvdkvvItnrtdcckerlsnaeIrvgnsnenngklnplcgtitdgaegetltv 101 + a++a Dgn++gnf+sgs++hT+ ++npWW +D++ +++++vvI+nrtdcc +rl+n+ +v ++n+n+ + t+++g++ t+ QTD37841.1|CBM47 310 SCSASLARDGNTSGNFSSGSVTHTNTQNNPWWLLDMEVDTTISTVVIHNRTDCCGNRLDNFILEVLDTNNNV------VYTHNNGSAAAVNTI 396 46799**************************************************************99884......223333334344444 PP CBM47.hmm 102 kckkgmegRYVrvqlpgreevlslcev 128 + ++ gR +r+ l g+++vlsl+ev QTD37841.1|CBM47 397 NG-INTLGRKIRIRLVGSNRVLSLAEV 422 44.4899******************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1448 residues searched) Target model(s): 1 (128 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 135.14 // Query: QOX79078.1|CBM47 [L=541] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.7e-43 132.7 0.4 8.7e-43 131.5 0.3 1.7 2 CBM47.hmm Domain annotation for each model (and alignments): >> CBM47.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 131.5 0.3 8.7e-43 8.7e-43 2 128 .] 139 268 .. 138 268 .. 0.91 2 ? -2.4 0.0 0.22 0.22 37 111 .. 403 471 .. 399 471 .. 0.57 Alignments for each domain: == domain 1 score: 131.5 bits; conditional E-value: 8.7e-43 CBM47.hmm 2 tqsstyeegaaaravDgnkdgnfnsgscshTkeesnpWWqvDLgkeykvdkvvItnrtdcckerlsnaeIrvgnsnenngkl.......nplc 87 +qsst + g+++ravDgnkdgn++++s++hT+++ n+WW+vDLg+++++++++++nrtdcc+erlsn+ + v+ ++ ++l ++ QOX79078.1|CBM47 139 RQSSTGYGGNPERAVDGNKDGNYSANSVTHTNNSPNDWWEVDLGSQKQIQTIKLWNRTDCCSERLSNFYVLVSANPFSGNNLqallndpSIWH 231 79***********************************************************************99998777788999555555 PP CBM47.hmm 88 gtitdgaegetltvkckkgmegRYVrvqlpgreevlslcev 128 ++++ ga+ ++tv + + egRYVrvql+g+ ++lsl+ev QOX79078.1|CBM47 232 FHHQ-GAAARETTVAV--AGEGRYVRVQLAGQ-NWLSLAEV 268 5555.88889999999..89*********887.******97 PP == domain 2 score: -2.4 bits; conditional E-value: 0.22 CBM47.hmm 37 npWW.qvDLgkeykvdkvvItnrtdcckerlsnaeIrvgnsnenngklnplcgtitdgaegetltvkckkgmegRY 111 +pW q +L+++y+ + I++ d r++ + +v+ s + g++np+ + + +g t+ +++g +gRY QOX79078.1|CBM47 403 DPWYpQKELNAKYHNTALSIWSEPDK---RFAYLMGTVSLSDQAAGTVNPVGTWRH--HPGA--TWVVSQGADGRY 471 56655667777777777788877554...555555555555555666676665555..2333..344444777776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (541 residues searched) Target model(s): 1 (128 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 84.69 // Query: QTD37617.1|CBM47 [L=1448] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.6e-31 93.3 1.8 2e-30 91.5 1.8 2.1 1 CBM47.hmm Domain annotation for each model (and alignments): >> CBM47.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 91.5 1.8 2e-30 2e-30 9 128 .] 310 422 .. 295 422 .. 0.84 Alignments for each domain: == domain 1 score: 91.5 bits; conditional E-value: 2e-30 CBM47.hmm 9 egaaaravDgnkdgnfnsgscshTkeesnpWWqvDLgkeykvdkvvItnrtdcckerlsnaeIrvgnsnenngklnplcgtitdgaegetltv 101 + a++a Dgn++gnf+sgs++hT+ ++npWW +D++ +++++vvI+nrtdcc +rl+n+ +v ++n+n+ + t+++g++ t+ QTD37617.1|CBM47 310 SCSASLARDGNTSGNFSSGSVTHTNTQNNPWWLLDMEVDTTISTVVIHNRTDCCGNRLDNFILEVLDTNNNV------VYTHNNGSAAAVNTI 396 46799**************************************************************99884......223333334344444 PP CBM47.hmm 102 kckkgmegRYVrvqlpgreevlslcev 128 + ++ gR +r+ l g+++vlsl+ev QTD37617.1|CBM47 397 NG-INTLGRKIRIRLVGSNRVLSLAEV 422 44.4899******************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1448 residues searched) Target model(s): 1 (128 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 152.45 // Query: QTD37840.1|CBM47 [L=1450] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.1e-31 93.2 1.8 2e-30 91.5 1.8 2.0 1 CBM47.hmm Domain annotation for each model (and alignments): >> CBM47.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 91.5 1.8 2e-30 2e-30 9 128 .] 312 424 .. 297 424 .. 0.84 Alignments for each domain: == domain 1 score: 91.5 bits; conditional E-value: 2e-30 CBM47.hmm 9 egaaaravDgnkdgnfnsgscshTkeesnpWWqvDLgkeykvdkvvItnrtdcckerlsnaeIrvgnsnenngklnplcgtitdgaegetltv 101 + a++a Dgn++gnf+sgs++hT+ ++npWW +D++ +++++vvI+nrtdcc +rl+n+ +v ++n+n+ + t+++g++ t+ QTD37840.1|CBM47 312 SCSASLARDGNTSGNFSSGSVTHTNTQNNPWWLLDMEVDTTISTVVIHNRTDCCGNRLDNFILEVLDTNNNV------VYTHNNGSAAAVNTI 398 46799**************************************************************99884......223333334344444 PP CBM47.hmm 102 kckkgmegRYVrvqlpgreevlslcev 128 + ++ gR +r+ l g+++vlsl+ev QTD37840.1|CBM47 399 NG-INTLGRKIRIRLVGSNRVLSLAEV 424 44.4899******************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1450 residues searched) Target model(s): 1 (128 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 158.32 // Query: WKD86782.1|CBM47 [L=2579] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-37 114.8 3.7 3.9e-37 113.2 3.7 1.9 1 CBM47.hmm Domain annotation for each model (and alignments): >> CBM47.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 113.2 3.7 3.9e-37 3.9e-37 1 128 [] 989 1109 .. 989 1109 .. 0.86 Alignments for each domain: == domain 1 score: 113.2 bits; conditional E-value: 3.9e-37 CBM47.hmm 1 atqsstyeegaaaravDgnkdgnfnsgscshTkeesnpWWqvDLgkeykvdkvvItnrtdcckerlsnaeIrvgnsnenngklnplcgtit 91 atqsst + g+a+ra+Dgn++g +n++s++hT++e+npWW +D+++e+ +d ++I+nrtdcc+erl+n+ ++ ++n ++ ++++ WKD86782.1|CBM47 989 ATQSSTGYGGNATRANDGNTSGVWNNNSVTHTNSEANPWWLLDMESEKLIDNITIWNRTDCCSERLNNFVLEILDTNLTVVS---TYNHVE 1076 58*************************************************************************9988533...333333 PP CBM47.hmm 92 dgaegetltvkckk.gmegRYVrvqlpgreevlslcev 128 + +++v+++ +++gRYVrv l +++++lsl+ev WKD86782.1|CBM47 1077 ----SVNTSVNVSGiNVTGRYVRVRL-ETTNFLSLAEV 1109 ....2334444444499*********.566******97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2579 residues searched) Target model(s): 1 (128 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 207.73 // [ok]