# hmmscan :: search sequence(s) against a profile database # HMMER 3.3.2 (Nov 2020); http://hmmer.org/ # Copyright (C) 2020 Howard Hughes Medical Institute. # Freely distributed under the BSD open source license. # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: /array2/siva/dbcansub_update/cazy2025/match_results/dbsub_data_2025/merged_clusters/CBM47/fasta_for_each_cluster/cluster_44.txt # target HMM database: merged_hmms/CBM47.hmm # per-dom hits tabular output: hmmscan_out/domain_result/CBM47/CBM47_cluster_44.out.dm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: XQU04377.1|CBM47 [L=557] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-15 43.8 0.0 1.8e-15 43.2 0.0 1.2 1 CBM47.hmm Domain annotation for each model (and alignments): >> CBM47.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 43.2 0.0 1.8e-15 1.8e-15 3 128 .] 406 538 .. 404 538 .. 0.86 Alignments for each domain: == domain 1 score: 43.2 bits; conditional E-value: 1.8e-15 CBM47.hmm 3 qssty...eegaaaravDgnkdgnfnsgscshTke..esnpWWqvDLgkey..kvdkvvItnrtdcc.kerlsnaeIrvgnsnenngklnplc 87 qss+ + +++avDgn++++ ++ s+s T + +W+ +D gke+ +++kvvI+ + ++++++ ++++ +n+ ++++ XQU04377.1|CBM47 406 QSSNRnmlGAYGPEKAVDGNTSSELSDVSISATGVaeGKTAWFGIDFGKETnrTIEKVVIYTPANLTlLGTMEEFKVILYDNDKNVLAEKTFN 498 676666777799***************9999998766999********975338*********887779***********9999987767777 PP CBM47.hmm 88 gtitdgaegetltvkckkgmegRYVrvqlpgreevlslcev 128 t + ++++ +t+k++ ++++R rv+ + +++l l+ev XQU04377.1|CBM47 499 TTPS-EKSTNVTTWKLEAPVKARALRVESTDPAHPLALTEV 538 7776.6677888999988********************997 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (557 residues searched) Target model(s): 1 (128 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 71.54 // Query: BDL44136.1|CBM47 [L=556] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.9e-15 42.5 0.0 4.3e-15 42.0 0.0 1.2 1 CBM47.hmm Domain annotation for each model (and alignments): >> CBM47.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 42.0 0.0 4.3e-15 4.3e-15 3 128 .] 403 535 .. 401 535 .. 0.87 Alignments for each domain: == domain 1 score: 42.0 bits; conditional E-value: 4.3e-15 CBM47.hmm 3 qssty...eegaaaravDgnkdgnfnsgscshTke..esnpWWqvDLgkeyk..vdkvvItnrtdcc.kerlsnaeIrvgnsnenngklnplc 87 qsst + + +++avDgn++++ ++ s+s T +n+W+ +D g+e++ v+k+vI+ + ++++++ ++++++n+ +++ BDL44136.1|CBM47 403 QSSTRnmlAAYGPEKAVDGNTSSELSDVSISATGVveGKNAWFGIDFGAETNrpVEKIVIYTPANLTlLGTMEEFKVMLYDNEKNVLAEKTFT 495 88888788889**********************98779**********986444*********887779**************9975555555 PP CBM47.hmm 88 gtitdgaegetltvkckkgmegRYVrvqlpgreevlslcev 128 t + ++++ t+k+++++++R r++ + +++l l+ev BDL44136.1|CBM47 496 TTPS-EKSTNISTWKLNSAVKARALRIESTSPARPLALTEV 535 5444.6667788999999***********9999*****997 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (556 residues searched) Target model(s): 1 (128 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 90.99 // Query: WMX36945.1|CBM47 [L=557] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-15 43.8 0.0 1.8e-15 43.2 0.0 1.2 1 CBM47.hmm Domain annotation for each model (and alignments): >> CBM47.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 43.2 0.0 1.8e-15 1.8e-15 3 128 .] 406 538 .. 404 538 .. 0.86 Alignments for each domain: == domain 1 score: 43.2 bits; conditional E-value: 1.8e-15 CBM47.hmm 3 qssty...eegaaaravDgnkdgnfnsgscshTke..esnpWWqvDLgkey..kvdkvvItnrtdcc.kerlsnaeIrvgnsnenngklnplc 87 qss+ + +++avDgn++++ ++ s+s T + +W+ +D gke+ +++kvvI+ + ++++++ ++++ +n+ ++++ WMX36945.1|CBM47 406 QSSNRnmlGAYGPEKAVDGNTSSELSDVSISATGVaeGKTAWFGIDFGKETnrTIEKVVIYTPANLTlLGTMEEFKVILYDNDKNVLAEKTFN 498 676666777799***************9999998766999********975338*********887779***********9999987767777 PP CBM47.hmm 88 gtitdgaegetltvkckkgmegRYVrvqlpgreevlslcev 128 t + ++++ +t+k++ ++++R rv+ + +++l l+ev WMX36945.1|CBM47 499 TTPS-EKSTNVTTWKLEAPVKARALRVESTDPAHPLALTEV 538 7776.6677888999988********************997 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (557 residues searched) Target model(s): 1 (128 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 87.16 // Query: WVO29470.1|CBM47 [L=556] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.9e-14 38.9 0.0 5.7e-14 38.3 0.0 1.3 1 CBM47.hmm Domain annotation for each model (and alignments): >> CBM47.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 38.3 0.0 5.7e-14 5.7e-14 3 128 .] 403 535 .. 401 535 .. 0.86 Alignments for each domain: == domain 1 score: 38.3 bits; conditional E-value: 5.7e-14 CBM47.hmm 3 qssty...eegaaaravDgnkdgnfnsgscshTke..esnpWWqvDLgkeyk..vdkvvItnrtdcc.kerlsnaeIrvgnsnenngklnplc 87 qsst + + +++avDgn+++ ++ s+s T +++W+ +D g+e++ v+k+vI+ + ++++++ ++++++n+ +++ WVO29470.1|CBM47 403 QSSTRnmlAAYGPEKAVDGNTSSGLSDVSISATGVveGKSAWFGIDFGAETNrpVEKIVIYTPANLTlLGTMEEFKVMLYDNEKNVLAEKTFT 495 88888788889**********************987799*********986444*********887779**************9975555555 PP CBM47.hmm 88 gtitdgaegetltvkckkgmegRYVrvqlpgreevlslcev 128 t + ++++ t+k+++++++R r++ + +++l l+ev WVO29470.1|CBM47 496 TTPS-EKSTNISTWKLDSPVKARALRIESTNPARPLALTEV 535 5444.6666788899999***********9999*****997 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (556 residues searched) Target model(s): 1 (128 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 92.85 // Query: WAR11245.1|CBM47 [L=189] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.5e-25 73.7 0.0 8.4e-25 73.3 0.0 1.1 1 CBM47.hmm Domain annotation for each model (and alignments): >> CBM47.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.3 0.0 8.4e-25 8.4e-25 6 128 .] 15 131 .. 10 131 .. 0.83 Alignments for each domain: == domain 1 score: 73.3 bits; conditional E-value: 8.4e-25 CBM47.hmm 6 ty.eegaaaravDgnkdgnfns.gscshTkeesnpWWqvDLgkeykvdkvvItnrtdcckerlsnaeIrvgnsnenngklnplcgtitdgaeg 96 t ++ a +avDgn++gn +sc+hT + s++ W vDLg+ y+v++v+I+nr ++ rl+n+e+++g +++ + l g ++ g g WAR11245.1|CBM47 15 TFsQDTTADKAVDGNTSGNLLYdKSCTHTLS-SDATWSVDLGAIYQVSTVTIYNR---NAVRLRNVEVFIGLDKDGP---YSLAGFHE-GVVG 99 4456789***********97544******96.67778******************...678**********888874...34444443.5666 PP CBM47.hmm 97 etltvkckkgmegRYVrvqlpgreevlslcev 128 ++t++++ + ++RYV+++++ + l+lcev WAR11245.1|CBM47 100 ASYTFTMPPNSQARYVNITRNPPYQRLTLCEV 131 7888888889**********8888******97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (189 residues searched) Target model(s): 1 (128 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 43.85 // Query: WVO32147.1|CBM47 [L=556] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.9e-14 38.9 0.0 5.7e-14 38.3 0.0 1.3 1 CBM47.hmm Domain annotation for each model (and alignments): >> CBM47.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 38.3 0.0 5.7e-14 5.7e-14 3 128 .] 403 535 .. 401 535 .. 0.86 Alignments for each domain: == domain 1 score: 38.3 bits; conditional E-value: 5.7e-14 CBM47.hmm 3 qssty...eegaaaravDgnkdgnfnsgscshTke..esnpWWqvDLgkeyk..vdkvvItnrtdcc.kerlsnaeIrvgnsnenngklnplc 87 qsst + + +++avDgn+++ ++ s+s T +++W+ +D g+e++ v+k+vI+ + ++++++ ++++++n+ +++ WVO32147.1|CBM47 403 QSSTRnmlAAYGPEKAVDGNTSSGLSDVSISATGVveGKSAWFGIDFGAETNrpVEKIVIYTPANLTlLGTMEEFKVMLYDNEKNVLAEKTFT 495 88888788889**********************987799*********986444*********887779**************9975555555 PP CBM47.hmm 88 gtitdgaegetltvkckkgmegRYVrvqlpgreevlslcev 128 t + ++++ t+k+++++++R r++ + +++l l+ev WVO32147.1|CBM47 496 TTPS-EKSTNISTWKLDSPVKARALRIESTNPARPLALTEV 535 5444.6666788899999***********9999*****997 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (556 residues searched) Target model(s): 1 (128 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 94.83 // Query: XBD74572.1|CBM47 [L=557] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-15 43.7 0.0 1.8e-15 43.2 0.0 1.2 1 CBM47.hmm Domain annotation for each model (and alignments): >> CBM47.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 43.2 0.0 1.8e-15 1.8e-15 3 128 .] 406 538 .. 404 538 .. 0.86 Alignments for each domain: == domain 1 score: 43.2 bits; conditional E-value: 1.8e-15 CBM47.hmm 3 qssty...eegaaaravDgnkdgnfnsgscshTke..esnpWWqvDLgkey..kvdkvvItnrtdcc.kerlsnaeIrvgnsnenngklnplc 87 qss+ + +++avDgn++++ ++ s+s T + +W+ +D gke+ +++kvvI+ + ++++++ ++++ +n+ ++++ XBD74572.1|CBM47 406 QSSNRnmlGAYGPEKAVDGNTSSELSDVSISATGVaeGKTAWFGIDFGKETnrTIEKVVIYTPANLTlLGTMEEFKVILYDNDKNVLAEKTFN 498 676666777799***************9999998766999********975338*********887779***********9999987767777 PP CBM47.hmm 88 gtitdgaegetltvkckkgmegRYVrvqlpgreevlslcev 128 t + ++++ +t+k++ ++++R rv+ + +++l l+ev XBD74572.1|CBM47 499 TTPS-EKSTNVTTWKLEAPVKARALRVESTDPAHPLALTEV 538 7776.6677888999988********************997 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (557 residues searched) Target model(s): 1 (128 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 96.70 // Query: XKL46997.1|CBM47 [L=557] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-15 43.7 0.0 1.8e-15 43.2 0.0 1.2 1 CBM47.hmm Domain annotation for each model (and alignments): >> CBM47.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 43.2 0.0 1.8e-15 1.8e-15 3 128 .] 406 538 .. 404 538 .. 0.86 Alignments for each domain: == domain 1 score: 43.2 bits; conditional E-value: 1.8e-15 CBM47.hmm 3 qssty...eegaaaravDgnkdgnfnsgscshTke..esnpWWqvDLgkey..kvdkvvItnrtdcc.kerlsnaeIrvgnsnenngklnplc 87 qss+ + +++avDgn++++ ++ s+s T + +W+ +D gke+ +++kvvI+ + ++++++ ++++ +n+ ++++ XKL46997.1|CBM47 406 QSSNRnmlGAYGPEKAVDGNTSSELSDVSISATGVaeGKTAWFGIDFGKETnrTIEKVVIYTPANLTlLGTMEEFKVILYDNDKNVLAEKTFN 498 676666777799***************9999998766999********975338*********887779***********9999987767777 PP CBM47.hmm 88 gtitdgaegetltvkckkgmegRYVrvqlpgreevlslcev 128 t + ++++ +t+k++ ++++R rv+ + +++l l+ev XKL46997.1|CBM47 499 TTPS-EKSTNVTTWKLEAPVKARALRVESTDPAHPLALTEV 538 7776.6677888999988********************997 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (557 residues searched) Target model(s): 1 (128 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 94.10 // Query: UTK45781.1|CBM47 [L=1273] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-65 204.8 0.1 6.6e-34 102.8 0.0 2.5 2 CBM47.hmm Domain annotation for each model (and alignments): >> CBM47.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 102.8 0.0 6.6e-34 6.6e-34 3 127 .. 613 744 .. 611 745 .. 0.90 2 ! 99.7 0.0 5.9e-33 5.9e-33 3 127 .. 1099 1230 .. 1097 1231 .. 0.86 Alignments for each domain: == domain 1 score: 102.8 bits; conditional E-value: 6.6e-34 CBM47.hmm 3 qssty..eegaaaravDgnkdgnfnsgscshTke.esnp..WWqvDLgkeykvdkvvItnrtdcckerlsnaeIrvgnsnenngkl....npl 86 qs ty + g++++avDgn +n+ ++c+hT+ ++np WW+vDL +v++vvItnr+dcc +rls++++ v ++ ++ +++ n l UTK45781.1|CBM47 613 QS-TYhdSYGKPEQAVDGNLGTNI--KNCTHTADtDNNPirWWRVDLMGLFTVQSVVITNRGDCCGDRLSDFNVYVMQTLDDPSEMthnsNNL 702 45.4547679*********98866..9****9987777788***********************************987777766666799** PP CBM47.hmm 87 cgtitd.gaegetltvkckkgmegRYVrvqlpgreevlslce 127 c ++++ a+g t+ ++c+++++g+YV++++p+++e+l+ ce UTK45781.1|CBM47 703 CLHHSGpLAQGATVRLSCSQPITGQYVSLVMPSKSEPLHFCE 744 *****************************************9 PP == domain 2 score: 99.7 bits; conditional E-value: 5.9e-33 CBM47.hmm 3 qssty..eegaaaravDgnkdgnfnsgscshTke...esnpWWqvDLgkeykvdkvvItnrtdcckerlsnaeIrvgnsnenngklnplcg 88 qs ty g++++avDgn d+ + +c+hT+ + WW+vDL+ y+v+ vvItnr+dcc +rlsn+ + v ++ +n g+ +p ++ UTK45781.1|CBM47 1099 QS-TYhpLYGHPEKAVDGNSDSAI--AQCTHTADvdnNITRWWRVDLQGLYRVQAVVITNRGDCCGSRLSNFAVVVHKNLTNPGEQEPTVE 1186 56.4547569*********99955..9*****985435557****************************************9999955555 PP CBM47.hmm 89 tit....d.gaegetltvkckkgmegRYVrvqlpgreevlslce 127 t + +g t ++c+++m +RYV+++lp+++ +l+ ce UTK45781.1|CBM47 1187 TRCllrsRaIGQGATERLECENPMVARYVSLVLPTNSVPLHFCE 1230 544455466**********************************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1273 residues searched) Target model(s): 1 (128 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 127.39 // [ok]