# hmmscan :: search sequence(s) against a profile database # HMMER 3.3.2 (Nov 2020); http://hmmer.org/ # Copyright (C) 2020 Howard Hughes Medical Institute. # Freely distributed under the BSD open source license. # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: /array2/siva/dbcansub_update/cazy2025/match_results/dbsub_data_2025/merged_clusters/CBM43/fasta_for_each_cluster/cluster_97.txt # target HMM database: merged_hmms/CBM43.hmm # per-dom hits tabular output: hmmscan_out/domain_result/CBM43/CBM43_cluster_97.out.dm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 396379|Zoorad1_GeneCatalog_proteins_20180427.aa.fasta|GH72|CBM43 [L=449] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.4e-08 20.0 0.0 1.6e-07 18.2 0.0 1.9 1 CBM43.hmm Domain annotation for each model (and alignments): >> CBM43.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.2 0.0 1.6e-07 1.6e-07 36 65 .. 409 438 .. 400 441 .. 0.88 Alignments for each domain: == domain 1 score: 18.2 bits; conditional E-value: 1.6e-07 CBM43.hmm 36 cyspntlkahasyafnsYyqkqkressaCd 65 s ++ ++++s+++n+Yy k++++++aC+ 396379|Zoorad1_GeneCatalog_proteins_20180427.aa.fasta|GH72|CBM43 409 TASRCSPRHRLSWMMNEYYLKTGQSRKACE 438 578899***********************6 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (449 residues searched) Target model(s): 1 (83 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 50.23 // Query: 394624|Zoorad1_GeneCatalog_proteins_20180427.aa.fasta|GH72|CBM43 [L=518] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-08 21.6 0.1 5.3e-08 19.7 0.1 2.0 1 CBM43.hmm Domain annotation for each model (and alignments): >> CBM43.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.7 0.1 5.3e-08 5.3e-08 36 65 .. 418 447 .. 407 462 .. 0.85 Alignments for each domain: == domain 1 score: 19.7 bits; conditional E-value: 5.3e-08 CBM43.hmm 36 cyspntlkahasyafnsYyqkqkressaCd 65 s+++ ++++s+++n+Yy +++r+++aC+ 394624|Zoorad1_GeneCatalog_proteins_20180427.aa.fasta|GH72|CBM43 418 IASLCSQRHRLSWMMNQYYLNKGRSKKACK 447 5789*************************8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (518 residues searched) Target model(s): 1 (83 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 94.98 // Query: 685026|Zoorad1_GeneCatalog_proteins_20180427.aa.fasta|GH72|CBM43 [L=503] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-07 17.9 0.9 6.1e-07 16.3 0.1 2.3 2 CBM43.hmm Domain annotation for each model (and alignments): >> CBM43.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.2 0.1 0.37 0.37 46 67 .. 351 373 .. 336 380 .. 0.71 2 ! 16.3 0.1 6.1e-07 6.1e-07 37 65 .. 404 432 .. 394 447 .. 0.88 Alignments for each domain: == domain 1 score: -2.2 bits; conditional E-value: 0.37 CBM43.hmm 46 asyafnsYyqkqk.ressaCdFk 67 s+ +nsY +++ +C Fk 685026|Zoorad1_GeneCatalog_proteins_20180427.aa.fasta|GH72|CBM43 351 ESWPINSYLPPVTlKSECECMFK 373 57888888877775667777776 PP == domain 2 score: 16.3 bits; conditional E-value: 6.1e-07 CBM43.hmm 37 yspntlkahasyafnsYyqkqkressaCd 65 s +++++++s+++n+Y+ + +r+++aC+ 685026|Zoorad1_GeneCatalog_proteins_20180427.aa.fasta|GH72|CBM43 404 ASRCSTRHKLSWMMNEYFLNMDRSKKACK 432 67899***********************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (503 residues searched) Target model(s): 1 (83 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 100.43 // Query: 681194|Zoorad1_GeneCatalog_proteins_20180427.aa.fasta|GH72|CBM43 [L=497] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.8e-08 19.6 3.3 7.7e-08 19.2 1.7 2.1 2 CBM43.hmm Domain annotation for each model (and alignments): >> CBM43.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.2 1.7 7.7e-08 7.7e-08 2 65 .. 371 442 .. 370 445 .. 0.78 2 ? -2.6 0.0 0.5 0.5 51 63 .. 464 476 .. 462 490 .. 0.76 Alignments for each domain: == domain 1 score: 19.2 bits; conditional E-value: 7.7e-08 CBM43.hmm 2 Cvakdsv...seeelqaaldyaCgegadCtai.qaggt.....cy 37 C+ak++ +++ + a+ C + dC + + + t 681194|Zoorad1_GeneCatalog_proteins_20180427.aa.fasta|GH72|CBM43 371 CIAKPQNryhDSDFYIASTRLKCRR-DDCPSFvSFNYTtgdygNA 414 7777666555666677788888998.8996651444446777888 PP CBM43.hmm 38 spntlkahasyafnsYyqkqkressaCd 65 s ++ + ++s+++n+Yy +++re++aC+ 681194|Zoorad1_GeneCatalog_proteins_20180427.aa.fasta|GH72|CBM43 415 SGCSPRYKLSWMMNKYYLEKGREKTACK 442 999************************7 PP == domain 2 score: -2.6 bits; conditional E-value: 0.5 CBM43.hmm 51 nsYyqkqkressa 63 ++Y+q+++++s++ 681194|Zoorad1_GeneCatalog_proteins_20180427.aa.fasta|GH72|CBM43 464 DKYWQHSRSSSDN 476 6899999977665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (497 residues searched) Target model(s): 1 (83 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 100.76 // Query: 841653|Zoorad1_GeneCatalog_proteins_20180427.aa.fasta|GH72|CBM43 [L=518] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-08 21.7 0.1 5.3e-08 19.7 0.1 2.1 1 CBM43.hmm Domain annotation for each model (and alignments): >> CBM43.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.7 0.1 5.3e-08 5.3e-08 36 65 .. 418 447 .. 407 462 .. 0.85 Alignments for each domain: == domain 1 score: 19.7 bits; conditional E-value: 5.3e-08 CBM43.hmm 36 cyspntlkahasyafnsYyqkqkressaCd 65 s+++ ++++s+++n+Yy +++r+++aC+ 841653|Zoorad1_GeneCatalog_proteins_20180427.aa.fasta|GH72|CBM43 418 IASLCSQRHRLSWMMNQYYLNKGRSKKACK 447 5789*************************8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (518 residues searched) Target model(s): 1 (83 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 114.84 // Query: 476756|Zoorad1_GeneCatalog_proteins_20180427.aa.fasta|GH72|CBM43 [L=494] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.3e-11 29.3 0.8 1.1e-10 28.4 0.8 1.5 1 CBM43.hmm Domain annotation for each model (and alignments): >> CBM43.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.4 0.8 1.1e-10 1.1e-10 2 72 .. 370 446 .. 369 458 .. 0.81 Alignments for each domain: == domain 1 score: 28.4 bits; conditional E-value: 1.1e-10 CBM43.hmm 2 Cvakdsv...seeelqaaldyaCgegadCta.iqaggt.....cy 37 C+a++s+ +++e+++ ++y+C+ +dC+a ++++ t 476756|Zoorad1_GeneCatalog_proteins_20180427.aa.fasta|GH72|CBM43 370 CIADPSLdytDSKEIESIFKYLCEI-VDCKAnLGTDPTkgeygLA 413 8888777666899************.***7625555558888889 PP CBM43.hmm 38 spntlkahasyafnsYyqkqkressaCdFkgaAtl 72 s +++++++s+a+n+ y k++r++++C At+ 476756|Zoorad1_GeneCatalog_proteins_20180427.aa.fasta|GH72|CBM43 414 SGCDTHHKLSWALNAHYLKSNRNKDTCT--KHATI 446 999************************5..44444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (494 residues searched) Target model(s): 1 (83 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 100.52 // Query: 672298|Zoorad1_GeneCatalog_proteins_20180427.aa.fasta|GH72|CBM43 [L=246] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-07 18.6 0.1 2.9e-07 17.3 0.1 1.8 1 CBM43.hmm Domain annotation for each model (and alignments): >> CBM43.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.3 0.1 2.9e-07 2.9e-07 2 65 .. 121 192 .. 120 207 .. 0.84 Alignments for each domain: == domain 1 score: 17.3 bits; conditional E-value: 2.9e-07 CBM43.hmm 2 Cvakdsv...seeelqaaldyaCgegadCtai.qaggt.....cy 37 Cvak++ +++ + a+ C++ dC + + + t 672298|Zoorad1_GeneCatalog_proteins_20180427.aa.fasta|GH72|CBM43 121 CVAKPQNpylESDFYIASTRLKCKR-DDCPSFvSFNYTtgdygVA 164 8988777666888889999999999.9997651445557788899 PP CBM43.hmm 38 spntlkahasyafnsYyqkqkressaCd 65 s + ++++s+++n+Yy +++r +++C 672298|Zoorad1_GeneCatalog_proteins_20180427.aa.fasta|GH72|CBM43 165 SSCPPRHRLSWMINRYYLEKGRIRDDCR 192 9999******************999996 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (246 residues searched) Target model(s): 1 (83 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 19.15 // Query: 470060|Zoorad1_GeneCatalog_proteins_20180427.aa.fasta|GH72|CBM43 [L=459] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.8e-08 19.2 0.9 2.2e-07 17.7 0.9 1.8 1 CBM43.hmm Domain annotation for each model (and alignments): >> CBM43.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.7 0.9 2.2e-07 2.2e-07 35 68 .. 364 402 .. 327 414 .. 0.72 Alignments for each domain: == domain 1 score: 17.7 bits; conditional E-value: 2.2e-07 CBM43.hmm 35 t.....cyspntlkahasyafnsYyqkqkressaCdFkg 68 t s + ++ ++s+++n+Yy +++r ++aC+F+ 470060|Zoorad1_GeneCatalog_proteins_20180427.aa.fasta|GH72|CBM43 364 TtgdygIASGCPARYRLSWMINKYYLEKGRVKNACEFDL 402 244455667788999**********************85 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (459 residues searched) Target model(s): 1 (83 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 103.49 // Query: 317858|Conth1_GeneCatalog_proteins_20141003.aa.fasta|GH72|CBM43 [L=500] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.7e-12 33.5 2.0 2.7e-12 33.5 2.0 2.0 2 CBM43.hmm Domain annotation for each model (and alignments): >> CBM43.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.0 0.1 0.63 0.63 47 64 .. 323 339 .. 306 350 .. 0.75 2 ! 33.5 2.0 2.7e-12 2.7e-12 2 83 .] 370 458 .. 369 458 .. 0.88 Alignments for each domain: == domain 1 score: -3.0 bits; conditional E-value: 0.63 CBM43.hmm 47 syafnsYyqkqkressaC 64 y +n+Y ++ ++s+C 317858|Conth1_GeneCatalog_proteins_20141003.aa.fasta|GH72|CBM43 323 KYTLNDYKPENT-KASTC 339 577777755555.46666 PP == domain 2 score: 33.5 bits; conditional E-value: 2.7e-12 CBM43.hmm 2 Cvak.dsvseeelqaaldyaCgegadCtaiqaggt......cyspn 40 C +k +++s +e++++++y+Cg+ +dC++ +++ s + 317858|Conth1_GeneCatalog_proteins_20141003.aa.fasta|GH72|CBM43 370 CKVKkTDLSGDEIAETFKYLCGK-VDCKKTLGSEPskgeygVISAC 414 6665256799*************.***9887766678999999*** PP CBM43.hmm 41 tlkahasyafnsYyqkqkressaCdF.kgaAtltstdpstgsCk 83 ++ +++s+a+n+ y k++++++aC +g++ +++++++ +sC+ 317858|Conth1_GeneCatalog_proteins_20141003.aa.fasta|GH72|CBM43 415 SAIDQLSWALNEVYIKENKNNDACVGeNGLGEVQTSKNNIDSCN 458 ************************753799*******9999995 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (500 residues searched) Target model(s): 1 (83 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 98.88 // [ok]