# hmmscan :: search sequence(s) against a profile database # HMMER 3.3.2 (Nov 2020); http://hmmer.org/ # Copyright (C) 2020 Howard Hughes Medical Institute. # Freely distributed under the BSD open source license. # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: /array2/siva/dbcansub_update/cazy2025/match_results/dbsub_data_2025/merged_clusters/CBM43/fasta_for_each_cluster/cluster_92.txt # target HMM database: merged_hmms/CBM43.hmm # per-dom hits tabular output: hmmscan_out/domain_result/CBM43/CBM43_cluster_92.out.dm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 376430|Zoorad1_GeneCatalog_proteins_20180427.aa.fasta|GH72|CBM43 [L=461] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.5e-08 18.9 2.0 9.5e-08 18.9 2.0 1.8 2 CBM43.hmm Domain annotation for each model (and alignments): >> CBM43.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.9 0.0 1 1 32 46 .. 320 334 .. 315 343 .. 0.69 2 ! 18.9 2.0 9.5e-08 9.5e-08 9 82 .. 376 450 .. 364 451 .. 0.74 Alignments for each domain: == domain 1 score: -3.9 bits; conditional E-value: 1 CBM43.hmm 32 aggtcyspntlkaha 46 a+ + y+pnt k ++ 376430|Zoorad1_GeneCatalog_proteins_20180427.aa.fasta|GH72|CBM43 320 ANLKSYKPNTKKRNC 334 455567777766655 PP == domain 2 score: 18.9 bits; conditional E-value: 9.5e-08 CBM43.hmm 9 seeelqaaldyaCgegadCtaiqaggtcyspntlkahasyafnsY 53 + e++++++ aCg C++i+ + + ++ + a s + ns 376430|Zoorad1_GeneCatalog_proteins_20180427.aa.fasta|GH72|CBM43 376 NGEAVGKLVGNACGD-GLCDDITIDTAKGEYGQFSACNSTVRNSI 419 5688999********.9******9999666666666566666553 PP CBM43.hmm 54 .yqkqkressaCdFkgaAtltstdps.tgsC 82 + + +++++CdFkg A +++++s +g+C 376430|Zoorad1_GeneCatalog_proteins_20180427.aa.fasta|GH72|CBM43 420 vFSAAVKKGAKCDFKGFAAKVKSSSSdSGKC 450 25556677899*****887777665537788 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (461 residues searched) Target model(s): 1 (83 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 59.78 // Query: 319991|Conth1_GeneCatalog_proteins_20141003.aa.fasta|GH72|CBM43 [L=524] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-07 18.4 3.0 2.8e-07 17.4 2.1 2.1 1 CBM43.hmm Domain annotation for each model (and alignments): >> CBM43.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.4 2.1 2.8e-07 2.8e-07 7 79 .. 375 447 .. 365 453 .. 0.79 Alignments for each domain: == domain 1 score: 17.4 bits; conditional E-value: 2.8e-07 CBM43.hmm 7 svseeelqaaldyaCgegadCtaiqaggt.....cyspntlkahas 47 + + e++++++ Cg C+ i+++ + +s+++++++ s 319991|Conth1_GeneCatalog_proteins_20141003.aa.fasta|GH72|CBM43 375 ESNGEKVGKLIGQTCGD-GVCDLIKSDTEkgeygDFSICDATTRNS 419 4478999**********.9*******9999999999********** PP CBM43.hmm 48 yafnsYyqkqkressaCdFkgaAtltstdpst 79 +f++ +++++CdF+g A+ +++++ + 319991|Conth1_GeneCatalog_proteins_20141003.aa.fasta|GH72|CBM43 420 IVFSEA----VKKGAKCDFNGFASSNKKTNGK 447 999864....345778********99886543 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (524 residues searched) Target model(s): 1 (83 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 34.24 // Query: 275836|Conth1_GeneCatalog_proteins_20141003.aa.fasta|GH72|CBM43 [L=217] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (217 residues searched) Target model(s): 1 (83 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 0 (0); expected 0.0 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 110.07 // Query: 479104|Zoorad1_GeneCatalog_proteins_20180427.aa.fasta|GH72|CBM43 [L=534] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (534 residues searched) Target model(s): 1 (83 nodes) Passed MSV filter: 0 (0); expected 0.0 (0.02) Passed bias filter: 0 (0); expected 0.0 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 285.56 // Query: 479113|Zoorad1_GeneCatalog_proteins_20180427.aa.fasta|GH72|CBM43 [L=587] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-07 18.2 1.8 3.5e-07 17.1 1.8 1.7 1 CBM43.hmm Domain annotation for each model (and alignments): >> CBM43.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.1 1.8 3.5e-07 3.5e-07 9 82 .. 380 454 .. 368 455 .. 0.77 Alignments for each domain: == domain 1 score: 17.1 bits; conditional E-value: 3.5e-07 CBM43.hmm 9 seeelqaaldyaCgegadCtaiqaggt.....cyspntlkahasy 48 + e++++a+ yaC++ +C+ i+++ + +s ++++ s 479113|Zoorad1_GeneCatalog_proteins_20180427.aa.fasta|GH72|CBM43 380 NGEKVGKAIGYACEH-GHCDLIASDPAkgiygLFSTCNTTVSNSL 423 67899**********.*******9999888888888877777777 PP CBM43.hmm 49 afnsYyqkqkressaCdFkgaAtltst.dpstgsC 82 +f+ ++ +++++CdF+g A + ++s ++C 479113|Zoorad1_GeneCatalog_proteins_20180427.aa.fasta|GH72|CBM43 424 VFD----TSAKAGAKCDFDGFAQEINPgTTSIKQC 454 776....45667899******98766524556666 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (587 residues searched) Target model(s): 1 (83 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 105.76 // Query: 445286|Zoorad1_GeneCatalog_proteins_20180427.aa.fasta|GH72|CBM43 [L=530] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.1e-08 20.1 2.9 8.6e-08 19.0 2.9 1.6 1 CBM43.hmm Domain annotation for each model (and alignments): >> CBM43.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.0 2.9 8.6e-08 8.6e-08 2 83 .] 364 449 .. 363 449 .. 0.80 Alignments for each domain: == domain 1 score: 19.0 bits; conditional E-value: 8.6e-08 CBM43.hmm 2 Cvakdsv....seeelqaaldyaCgegadCtaiqaggt.....cy 37 C + d++ + +++++++ Cg C++i a+++ +y 445286|Zoorad1_GeneCatalog_proteins_20180427.aa.fasta|GH72|CBM43 364 CRVTDKAkdpeNGQSVGELVGHQCGF-GLCDDIIADAEkgvygAY 407 66666663333667788999999999.9*****999998888888 PP CBM43.hmm 38 spntlkahasyafnsYyqkqkressaCdFkgaAtltstdpstgsC 82 s + + + s +f++ +++++CdF+g A+ +++++s+++C 445286|Zoorad1_GeneCatalog_proteins_20180427.aa.fasta|GH72|CBM43 408 SGCPSHIKNSIVFDA----AAKKGNSCDFDGFASSSNSKKSSSQC 448 888888888888876....4445779******************* PP CBM43.hmm 83 k 83 + 445286|Zoorad1_GeneCatalog_proteins_20180427.aa.fasta|GH72|CBM43 449 Q 449 6 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (530 residues searched) Target model(s): 1 (83 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 96.42 // Query: 437405|Zoorad1_GeneCatalog_proteins_20180427.aa.fasta|GH72|CBM43 [L=495] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.2e-12 32.6 3.5 1.5e-11 31.0 3.5 1.9 1 CBM43.hmm Domain annotation for each model (and alignments): >> CBM43.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.0 3.5 1.5e-11 1.5e-11 2 69 .. 368 443 .. 367 456 .. 0.81 Alignments for each domain: == domain 1 score: 31.0 bits; conditional E-value: 1.5e-11 CBM43.hmm 2 Cvakdsv...seeelqaaldyaCgegadCta.iqaggt.....cy 37 Cva+d++ ++++++++++++C+e +dC++ ++ +++ ++ 437405|Zoorad1_GeneCatalog_proteins_20180427.aa.fasta|GH72|CBM43 368 CVAQDTIdttDSDTMEKKFSFLCNE-VDCKSgLSGNAKkgeygAM 411 99997775558899***********.***7615555559999999 PP CBM43.hmm 38 spntlkahasyafnsYyqkqkressaCdFkga 69 s +++k+++s+a+n+ y k++++++aC+ +g+ 437405|Zoorad1_GeneCatalog_proteins_20180427.aa.fasta|GH72|CBM43 412 SGCSAKHQLSWALNANYIKSGKKADACKQDGV 443 ***************************87775 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (495 residues searched) Target model(s): 1 (83 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 96.97 // Query: 461135|Zoorad1_GeneCatalog_proteins_20180427.aa.fasta|GH72|CBM43 [L=499] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (499 residues searched) Target model(s): 1 (83 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 172.59 // [ok]