# hmmscan :: search sequence(s) against a profile database # HMMER 3.3.2 (Nov 2020); http://hmmer.org/ # Copyright (C) 2020 Howard Hughes Medical Institute. # Freely distributed under the BSD open source license. # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: /array2/siva/dbcansub_update/cazy2025/match_results/dbsub_data_2025/merged_clusters/CBM42/fasta_for_each_cluster/cluster_23.txt # target HMM database: merged_hmms/CBM42.hmm # per-dom hits tabular output: hmmscan_out/domain_result/CBM42/CBM42_cluster_23.out.dm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: QOC92099.1|CBM42 [L=389] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.8e-45 139.1 0.1 6.9e-45 138.6 0.1 1.2 1 CBM42.hmm Domain annotation for each model (and alignments): >> CBM42.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 138.6 0.1 6.9e-45 6.9e-45 6 135 .. 256 384 .. 251 385 .. 0.91 Alignments for each domain: == domain 1 score: 138.6 bits; conditional E-value: 6.9e-45 CBM42.hmm 6 vnyttryvrhsdstvrievvsssssaadkqdatfrvvpGLadsscvSfesvnfpgsYLRhqnfrlrldandgsalfredATFcaragladsgv 98 + ++ r vrh+++++r+++v+ ssa +++da f+v++GLa+ +c Sfesvnfpg+YLRh +fr+ l++ dgs+lfr+dATFc++ag +++ + QOC92099.1|CBM42 256 AALPGRRVRHAGFQARVDAVDPGSSAGTRADAAFVVRTGLAG-ACHSFESVNFPGHYLRHHEFRVFLHRADGSDLFRADATFCQVAGISGTHT 347 678999**********************************75.79************************************************ PP CBM42.hmm 99 sleSvnyPgrylRhy.nnelyidsndstasfraDatfe 135 sl+S+nyP+rylRh ++ +++ + ++ atf+ QOC92099.1|CBM42 348 SLRSYNYPNRYLRHDgHRQMHVSPL-GDGASSSSATFV 384 **************96678888888.555556666665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (389 residues searched) Target model(s): 1 (136 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 51.45 // Query: QKW13844.1|CBM42 [L=374] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.9e-43 131.8 0.0 1.3e-42 131.2 0.0 1.2 1 CBM42.hmm Domain annotation for each model (and alignments): >> CBM42.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 131.2 0.0 1.3e-42 1.3e-42 6 135 .. 241 369 .. 237 370 .. 0.93 Alignments for each domain: == domain 1 score: 131.2 bits; conditional E-value: 1.3e-42 CBM42.hmm 6 vnyttryvrhsdstvrievvsssssaadkqdatfrvvpGLadsscvSfesvnfpgsYLRhqnfrlrldandgsalfredATFcaragladsgv 98 + ++ r vrh+++++++++v++ ssa +++d+ f+v++GLa+ +c+Sfesvnfpg+YLRh +fr+ l++ +g ++fr+dATFc++ g ++ + QKW13844.1|CBM42 241 AALPGRRVRHAGFQAQVDAVDAGSSAGARADSGFVVRTGLAG-ACLSFESVNFPGHYLRHHEFRVFLHRAEGGDVFRADATFCQVGGIGGTHT 332 567999**********************************75.79************************************************ PP CBM42.hmm 99 sleSvnyPgrylRhy.nnelyidsndstasfraDatfe 135 sl+S+nyP+rylRh + +++++++ + ++ atf+ QKW13844.1|CBM42 333 SLRSYNYPNRYLRHDgQRQMQVSPI-GDGASASSATFV 369 **************9788999*999.666677778876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (374 residues searched) Target model(s): 1 (136 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 58.92 // Query: SDS89395.1|CBM42 [L=220] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-29 89.4 0.2 1.5e-29 89.0 0.2 1.1 1 CBM42.hmm Domain annotation for each model (and alignments): >> CBM42.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 89.0 0.2 1.5e-29 1.5e-29 34 135 .. 116 215 .. 99 216 .. 0.90 Alignments for each domain: == domain 1 score: 89.0 bits; conditional E-value: 1.5e-29 CBM42.hmm 34 kqdatfrvvpGLadsscvSfesvnfpgsYLRhqnfrlrldandgsalfredATFcaragladsgvsleSvnyPgrylRhy.nnelyidsndst 125 + at +vv+GL+d++c+Sf+ ++ g++LRh ++rlr da d+s+lfr+dATFc+++g+ + +l+S nyP++ ++ + + lyid+ + SDS89395.1|CBM42 116 ADPATVTVVAGLGDEACFSFRLSD--GRFLRHFDYRLRFDASDDSDLFRADATFCQESGTDAGTIRLRSKNYPDYRIHQRkDASLYIDKP-EG 205 5568889*****************..************************************************9998876999******.77 PP CBM42.hmm 126 asfraDatfe 135 a+f+ +++f SDS89395.1|CBM42 206 AAFDGESSFM 215 8888888885 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (220 residues searched) Target model(s): 1 (136 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 48.99 // Query: BCJ58059.1|CBM42 [L=331] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.6e-45 138.3 0.0 1.3e-44 137.7 0.0 1.2 1 CBM42.hmm Domain annotation for each model (and alignments): >> CBM42.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 137.7 0.0 1.3e-44 1.3e-44 6 126 .. 197 319 .. 193 326 .. 0.93 Alignments for each domain: == domain 1 score: 137.7 bits; conditional E-value: 1.3e-44 CBM42.hmm 6 vnyttryvrhsdstvrievvsssssaadkqdatfrvvpGLadsscvSfesvnfpgsYLRhqnfrlrldandgsalfredATFcaragladsgv 98 ++++ + vrh+++ +r+++v++ s+a +k+da f+v++GL++s cvSfe+vn+pg+YLRh+ fr+ l++ +gsa fr+dATFc+++g ++ + BCJ58059.1|CBM42 197 AGLPGHRVRHANFEARVDPVNAGSNAGTKADAAFVVRSGLGKSDCVSFEAVNYPGYYLRHSGFRVFLHRAEGSAGFRADATFCPVTGIGGKHT 289 6789999************************************************************************************** PP CBM42.hmm 99 sleSvnyPgrylRhy.nnelyidsn.dsta 126 sl+S+nyP+ryl h +++i+++ d ++ BCJ58059.1|CBM42 290 SLRSHNYPDRYLSHDsRRQMRIAPIgDGAT 319 **************867899***9964443 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (331 residues searched) Target model(s): 1 (136 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 69.05 // Query: ADB29520.1|CBM42 [L=403] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-90 286.8 1.3 1.1e-47 147.7 0.2 3.0 2 CBM42.hmm Domain annotation for each model (and alignments): >> CBM42.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 136.7 0.1 2.7e-44 2.7e-44 2 134 .. 110 241 .. 109 243 .. 0.96 2 ! 147.7 0.2 1.1e-47 1.1e-47 2 135 .. 257 397 .. 256 398 .. 0.96 Alignments for each domain: == domain 1 score: 136.7 bits; conditional E-value: 2.7e-44 CBM42.hmm 2 rvtsvnyttryvrhsdstvrievvsssssaadkqdatfrvvpGLadss.cvSfesvnfpgsYLRhqnfrlrldandgsalfredATFcaragl 93 +++++n++ rh+++ + +++v +++ d++datf+v++GL++++ +vSfe++n+pg++LRh+nf++ l++nd+s+lfr+dATF+++ g ADB29520.1|CBM42 110 SLQAINFPGLLARHRNFAGLLTPV---ETDLDRADATFVVRKGLTGAAgTVSFEASNHPGHFLRHANFKVGLHKNDNSDLFRADATFKRHGGD 199 57899******************8...9****************77666******************************************** PP CBM42.hmm 94 ads.gvsleSvnyPgrylRhynnelyidsndstasfraDatf 134 + +vs+eSvn+P++ylRh+n+el i+++d +++ Da + ADB29520.1|CBM42 200 EVVgIVSFESVNFPEHYLRHQNSELVISKHDGSDQVWLDAQW 241 *99999**********************************99 PP == domain 2 score: 147.7 bits; conditional E-value: 1.1e-47 CBM42.hmm 2 rvtsvnyttryvrhsdstvrievvsssssaadkqdatfrvvpGLadss....cvSfesvnfpgsYLRhqnfrlrldandgsalfredATFcar 90 +++svn++ +yvrh++s+++i++v ss+ d++datf+v+pGL++++ vS+es+nfpg+YLRhq+fr++l+++dg++lfr+dATF ++ ADB29520.1|CBM42 257 SFHSVNFPGHYVRHRNSLGEISRV---SSDLDRNDATFVVRPGLWRNGpfpqGVSLESRNFPGHYLRHQDFRVKLHKDDGTELFRKDATFAFV 346 789********************8...9****************99999999***************************************** PP CBM42.hmm 91 agladsgv....sleSvnyPgr..ylRhynnelyidsndstasfraDatfe 135 +g+ d ++ +l+ v+ P+r y+Rh+n+el+i+++d +++f Dat++ ADB29520.1|CBM42 347 SGYGDLASkgygTLKPVHSPHRdfYVRHQNFELWIAETDGSSLFGLDATWQ 397 **99984447789********999**************************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (403 residues searched) Target model(s): 1 (136 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 17.17 // Query: BBH68397.1|CBM42 [L=214] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.6e-28 84.5 0.1 4.8e-28 84.1 0.1 1.2 1 CBM42.hmm Domain annotation for each model (and alignments): >> CBM42.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 84.1 0.1 4.8e-28 4.8e-28 33 131 .. 112 206 .. 92 211 .. 0.87 Alignments for each domain: == domain 1 score: 84.1 bits; conditional E-value: 4.8e-28 CBM42.hmm 33 dkqdatfrvvpGLadsscvSfesvnfpgsYLRhqnfrlrldandgsalfredATFcaragladsgvsleSvnyPgrylRhy.nnelyidsnds 124 + at +vv+GLad +c+Sf+ ++ ++YLRh ++rlr da d+s+lfr+dATFc+++ ++ +l+S nyP++ l+++ + +yid+ BBH68397.1|CBM42 112 SADPATLTVVTGLADDGCFSFRTAD--DRYLRHFDYRLRSDATDDSDLFRADATFCRVDDGEGGTFRLRSKNYPDHLLHRRdDGSVYIDEP-- 200 4556899******************..********************************99999************987664899****99.. PP CBM42.hmm 125 tasfraD 131 + ++a BBH68397.1|CBM42 201 -TGDTAA 206 .333333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (214 residues searched) Target model(s): 1 (136 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 50.28 // [ok]