# hmmscan :: search sequence(s) against a profile database # HMMER 3.3.2 (Nov 2020); http://hmmer.org/ # Copyright (C) 2020 Howard Hughes Medical Institute. # Freely distributed under the BSD open source license. # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: /array2/siva/dbcansub_update/cazy2025/match_results/dbsub_data_2025/merged_clusters/CBM3/fasta_for_each_cluster/cluster_48.txt # target HMM database: merged_hmms/CBM3.hmm # per-dom hits tabular output: hmmscan_out/domain_result/CBM3/CBM3_cluster_48.out.dm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: APR77012.1|CBM3 [L=945] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.4e-11 29.6 0.0 9e-11 28.6 0.0 1.5 1 CBM3.hmm Domain annotation for each model (and alignments): >> CBM3.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.6 0.0 9e-11 9e-11 2 86 .. 793 882 .. 792 883 .. 0.69 Alignments for each domain: == domain 1 score: 28.6 bits; conditional E-value: 9e-11 CBM3.hmm 2 yvnadnsattnsiepklkikNsgspaidlsdlkvRYyftldevke.agf..tcddaqvsvnyde...gasnvtakfsklskpksgadyYve 86 y n ++++tt++i +l + N+gs+a+dl+ +++RYy t ++ a+f ++++a + + s +t + ++++ +sgad Y++ APR77012.1|CBM3 793 YQNEHSATTTTAIGSQLWVLNNGSTAVDLTGMTLRYYLTTAGEVPlASFvsNINWAHTAPIVGGaqtQWSGITISTASITP-VSGADAYIQ 882 66777999**********************************996333322455555543333321223444444444443.699999986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (945 residues searched) Target model(s): 1 (88 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 86.99 // Query: AEI31498.1|CBM3 [L=1483] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.4e-29 86.4 0.8 8.4e-29 86.4 0.8 3.3 2 CBM3.hmm Domain annotation for each model (and alignments): >> CBM3.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 86.4 0.8 8.4e-29 8.4e-29 1 88 [] 40 129 .. 40 129 .. 0.97 2 ? -1.9 0.3 0.3 0.3 7 33 .. 363 389 .. 359 391 .. 0.73 Alignments for each domain: == domain 1 score: 86.4 bits; conditional E-value: 8.4e-29 CBM3.hmm 1 qyvnadnsattnsiepklkikNsgspaidlsdlkvRYyftldevkeagftcddaqvsvnyde.g.asnvtakfsklskpksgadyYveig 88 q++ ++s+t n+i pk+ki+N++ + dl++lk+RYyft+d+ ++++f+cd+a++ ++y+ +snv ++f+ +++++++ad+Y+ei+ AEI31498.1|CBM3 40 QFADTNTSTTMNTIAPKFKITNNTGAPLDLTTLKLRYYFTADGTQDENFWCDHAGMLNGYNYqTiTSNVVGTFVAMDNATATADHYLEIS 129 688899*******************************************************9857***********************96 PP == domain 2 score: -1.9 bits; conditional E-value: 0.3 CBM3.hmm 7 nsattnsiepklkikNsgspaidlsdl 33 ++++t++ +++ +kNs + + d+ AEI31498.1|CBM3 363 SDDSTKTAAVTVTVKNSNATNVTVGDV 389 456778888888999988777776666 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1483 residues searched) Target model(s): 1 (88 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 154.42 // Query: ADZ19961.1|CBM3 [L=1483] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.4e-29 86.4 0.8 8.4e-29 86.4 0.8 3.3 2 CBM3.hmm Domain annotation for each model (and alignments): >> CBM3.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 86.4 0.8 8.4e-29 8.4e-29 1 88 [] 40 129 .. 40 129 .. 0.97 2 ? -1.9 0.3 0.3 0.3 7 33 .. 363 389 .. 359 391 .. 0.73 Alignments for each domain: == domain 1 score: 86.4 bits; conditional E-value: 8.4e-29 CBM3.hmm 1 qyvnadnsattnsiepklkikNsgspaidlsdlkvRYyftldevkeagftcddaqvsvnyde.g.asnvtakfsklskpksgadyYveig 88 q++ ++s+t n+i pk+ki+N++ + dl++lk+RYyft+d+ ++++f+cd+a++ ++y+ +snv ++f+ +++++++ad+Y+ei+ ADZ19961.1|CBM3 40 QFADTNTSTTMNTIAPKFKITNNTGAPLDLTTLKLRYYFTADGTQDENFWCDHAGMLNGYNYqTiTSNVVGTFVAMDNATATADHYLEIS 129 688899*******************************************************9857***********************96 PP == domain 2 score: -1.9 bits; conditional E-value: 0.3 CBM3.hmm 7 nsattnsiepklkikNsgspaidlsdl 33 ++++t++ +++ +kNs + + d+ ADZ19961.1|CBM3 363 SDDSTKTAAVTVTVKNSNATNVTVGDV 389 456778888888999988777776666 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1483 residues searched) Target model(s): 1 (88 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 163.45 // Query: URZ05710.1|CBM3 [L=1909] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.1e-29 86.8 1.9 7.5e-28 83.4 1.9 3.2 1 CBM3.hmm Domain annotation for each model (and alignments): >> CBM3.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 83.4 1.9 7.5e-28 7.5e-28 3 88 .] 42 128 .. 40 128 .. 0.94 Alignments for each domain: == domain 1 score: 83.4 bits; conditional E-value: 7.5e-28 CBM3.hmm 3 vnadnsattnsiepklkikNsgspaidlsdlkvRYyftldevkeagftcddaqvsvnyde.gasnvtakfsklskpksgadyYveig 88 ++ +++at+n+i k+k++N++ + dl++lk+RYyft+d+ ++++f+cd+a ++ ++ + +snv ++f+ +++p+++ad+Y+ei+ URZ05710.1|CBM3 42 AETNTNATSNTIASKFKVTNNTGAPLDLTTLKLRYYFTSDGTQAQNFWCDYAAIEGANYKtITSNVVGNFVAMDNPTKTADHYLEIS 128 6788**************************************************87766635***********************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1909 residues searched) Target model(s): 1 (88 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 183.00 // Query: URZ01446.1|CBM3 [L=1909] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6e-29 86.9 1.9 7.5e-28 83.4 1.9 3.2 1 CBM3.hmm Domain annotation for each model (and alignments): >> CBM3.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 83.4 1.9 7.5e-28 7.5e-28 3 88 .] 42 128 .. 40 128 .. 0.94 Alignments for each domain: == domain 1 score: 83.4 bits; conditional E-value: 7.5e-28 CBM3.hmm 3 vnadnsattnsiepklkikNsgspaidlsdlkvRYyftldevkeagftcddaqvsvnyde.gasnvtakfsklskpksgadyYveig 88 ++ +++at+n+i k+k++N++ + dl++lk+RYyft+d+ ++++f+cd+a ++ ++ + +snv ++f+ +++p+++ad+Y+ei+ URZ01446.1|CBM3 42 AETNTNATSNTIASKFKVTNNTGAPLDLTTLKLRYYFTSDGTQAQNFWCDYAAIEGANYKtITSNVVGNFVAMDNPTKTADHYLEIS 128 6788**************************************************87766635***********************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1909 residues searched) Target model(s): 1 (88 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 188.24 // Query: URZ15503.1|CBM3 [L=1909] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.1e-29 86.8 1.9 7.5e-28 83.4 1.9 3.2 1 CBM3.hmm Domain annotation for each model (and alignments): >> CBM3.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 83.4 1.9 7.5e-28 7.5e-28 3 88 .] 42 128 .. 40 128 .. 0.94 Alignments for each domain: == domain 1 score: 83.4 bits; conditional E-value: 7.5e-28 CBM3.hmm 3 vnadnsattnsiepklkikNsgspaidlsdlkvRYyftldevkeagftcddaqvsvnyde.gasnvtakfsklskpksgadyYveig 88 ++ +++at+n+i k+k++N++ + dl++lk+RYyft+d+ ++++f+cd+a ++ ++ + +snv ++f+ +++p+++ad+Y+ei+ URZ15503.1|CBM3 42 AETNTNATSNTIASKFKVTNNTGAPLDLTTLKLRYYFTSDGTQAQNFWCDYAAIEGANYKtITSNVVGNFVAMDNPTKTADHYLEIS 128 6788**************************************************87766635***********************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1909 residues searched) Target model(s): 1 (88 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 183.94 // Query: AAK78886.1|CBM3 [L=1483] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.4e-29 86.4 0.8 8.4e-29 86.4 0.8 3.3 2 CBM3.hmm Domain annotation for each model (and alignments): >> CBM3.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 86.4 0.8 8.4e-29 8.4e-29 1 88 [] 40 129 .. 40 129 .. 0.97 2 ? -1.9 0.3 0.3 0.3 7 33 .. 363 389 .. 359 391 .. 0.73 Alignments for each domain: == domain 1 score: 86.4 bits; conditional E-value: 8.4e-29 CBM3.hmm 1 qyvnadnsattnsiepklkikNsgspaidlsdlkvRYyftldevkeagftcddaqvsvnyde.g.asnvtakfsklskpksgadyYveig 88 q++ ++s+t n+i pk+ki+N++ + dl++lk+RYyft+d+ ++++f+cd+a++ ++y+ +snv ++f+ +++++++ad+Y+ei+ AAK78886.1|CBM3 40 QFADTNTSTTMNTIAPKFKITNNTGAPLDLTTLKLRYYFTADGTQDENFWCDHAGMLNGYNYqTiTSNVVGTFVAMDNATATADHYLEIS 129 688899*******************************************************9857***********************96 PP == domain 2 score: -1.9 bits; conditional E-value: 0.3 CBM3.hmm 7 nsattnsiepklkikNsgspaidlsdl 33 ++++t++ +++ +kNs + + d+ AAK78886.1|CBM3 363 SDDSTKTAAVTVTVKNSNATNVTVGDV 389 456778888888999988777776666 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1483 residues searched) Target model(s): 1 (88 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 184.82 // Query: URZ10749.1|CBM3 [L=1909] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.1e-29 86.8 1.9 7.5e-28 83.4 1.9 3.2 1 CBM3.hmm Domain annotation for each model (and alignments): >> CBM3.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 83.4 1.9 7.5e-28 7.5e-28 3 88 .] 42 128 .. 40 128 .. 0.94 Alignments for each domain: == domain 1 score: 83.4 bits; conditional E-value: 7.5e-28 CBM3.hmm 3 vnadnsattnsiepklkikNsgspaidlsdlkvRYyftldevkeagftcddaqvsvnyde.gasnvtakfsklskpksgadyYveig 88 ++ +++at+n+i k+k++N++ + dl++lk+RYyft+d+ ++++f+cd+a ++ ++ + +snv ++f+ +++p+++ad+Y+ei+ URZ10749.1|CBM3 42 AETNTNATSNTIASKFKVTNNTGAPLDLTTLKLRYYFTSDGTQAQNFWCDYAAIEGANYKtITSNVVGNFVAMDNPTKTADHYLEIS 128 6788**************************************************87766635***********************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1909 residues searched) Target model(s): 1 (88 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 193.64 // Query: AWV80605.1|CBM3 [L=1483] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.4e-29 86.4 0.8 8.4e-29 86.4 0.8 3.3 2 CBM3.hmm Domain annotation for each model (and alignments): >> CBM3.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 86.4 0.8 8.4e-29 8.4e-29 1 88 [] 40 129 .. 40 129 .. 0.97 2 ? -1.9 0.3 0.3 0.3 7 33 .. 363 389 .. 359 391 .. 0.73 Alignments for each domain: == domain 1 score: 86.4 bits; conditional E-value: 8.4e-29 CBM3.hmm 1 qyvnadnsattnsiepklkikNsgspaidlsdlkvRYyftldevkeagftcddaqvsvnyde.g.asnvtakfsklskpksgadyYveig 88 q++ ++s+t n+i pk+ki+N++ + dl++lk+RYyft+d+ ++++f+cd+a++ ++y+ +snv ++f+ +++++++ad+Y+ei+ AWV80605.1|CBM3 40 QFADTNTSTTMNTIAPKFKITNNTGAPLDLTTLKLRYYFTADGTQDENFWCDHAGMLNGYNYqTiTSNVVGTFVAMDNATATADHYLEIS 129 688899*******************************************************9857***********************96 PP == domain 2 score: -1.9 bits; conditional E-value: 0.3 CBM3.hmm 7 nsattnsiepklkikNsgspaidlsdl 33 ++++t++ +++ +kNs + + d+ AWV80605.1|CBM3 363 SDDSTKTAAVTVTVKNSNATNVTVGDV 389 456778888888999988777776666 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1483 residues searched) Target model(s): 1 (88 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 179.99 // [ok]