# hmmscan :: search sequence(s) against a profile database # HMMER 3.3.2 (Nov 2020); http://hmmer.org/ # Copyright (C) 2020 Howard Hughes Medical Institute. # Freely distributed under the BSD open source license. # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: /array2/siva/dbcansub_update/cazy2025/match_results/dbsub_data_2025/merged_clusters/CBM3/fasta_for_each_cluster/cluster_34.txt # target HMM database: merged_hmms/CBM3.hmm # per-dom hits tabular output: hmmscan_out/domain_result/CBM3/CBM3_cluster_34.out.dm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: XMB61842.1|CBM3|CBM4|GH9 [L=899] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.7e-13 35.9 1.9 4.7e-13 35.9 1.9 3.2 2 CBM3.hmm Domain annotation for each model (and alignments): >> CBM3.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 35.9 1.9 4.7e-13 4.7e-13 11 87 .. 778 852 .. 772 853 .. 0.84 2 ? -0.6 0.3 0.12 0.12 7 28 .. 860 881 .. 855 883 .. 0.86 Alignments for each domain: == domain 1 score: 35.9 bits; conditional E-value: 4.7e-13 CBM3.hmm 11 tnsiepklkikNsgspaidlsdlkvRYyftldevkeagftcddaqvsvnyde...gasnvtakfsklskpksgadyYvei 87 +si+ ++ ++ ++++a+dls+l+++Yy+t+++ k+++f+cd+a +++ ++ + + vt++f+ +++ +Y+e+ XMB61842.1|CBM3|CBM4|GH9 778 GSSINQTYTLTPKTTQAVDLSKLSIKYYYTKNDTKTMNFWCDNAAAQLTVSPwyvAFNGVTGTFG-----SDTNGNYLEV 852 67888888888999********************************9999887644566777766.....5788888887 PP == domain 2 score: -0.6 bits; conditional E-value: 0.12 CBM3.hmm 7 nsattnsiepklkikNsgspai 28 +++t si+++++ N+ +++i XMB61842.1|CBM3|CBM4|GH9 860 LQPNTGSIQLQVRYANNDWSEI 881 578999*************987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (899 residues searched) Target model(s): 1 (88 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 77.49 // Query: ACZ98604.1|CBM3|CBM4|GH9 [L=895] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-13 37.5 6.7 1.9e-13 37.2 1.9 3.2 3 CBM3.hmm Domain annotation for each model (and alignments): >> CBM3.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.0 0.0 0.66 0.66 17 28 .. 70 81 .. 53 91 .. 0.59 2 ! 37.2 1.9 1.9e-13 1.9e-13 7 88 .] 769 849 .. 765 849 .. 0.84 3 ? 0.7 0.0 0.045 0.045 8 28 .. 857 877 .. 852 879 .. 0.84 Alignments for each domain: == domain 1 score: -3.0 bits; conditional E-value: 0.66 CBM3.hmm 17 klkikNsgspai 28 k+ i+N+g+ ACZ98604.1|CBM3|CBM4|GH9 70 KATITNTGDVNY 81 444555554333 PP == domain 2 score: 37.2 bits; conditional E-value: 1.9e-13 CBM3.hmm 7 nsattnsiepklkikNsgspaidlsdlkvRYyftldevkeagftcddaqvsvnyde...g.asnvtakfsklskpksgadyYvei 87 n+++++ ++ +++ik +++ aidls++ v+Yyft++++k++++++d + +++n ++ + ++n ++k++ k+++ +Y+ei ACZ98604.1|CBM3|CBM4|GH9 769 NTTGNSIVNQTYEIKATSQNAIDLSKVAVKYYFTKSDSKNMKCWIDCSDAQLNVAPwyvAlTGNTNGKLG-----KDSKGNYLEI 848 6778889999**********************************99999988888875544666666655.....6778899999 PP CBM3.hmm 88 g 88 + ACZ98604.1|CBM3|CBM4|GH9 849 S 849 6 PP == domain 3 score: 0.7 bits; conditional E-value: 0.045 CBM3.hmm 8 sattnsiepklkikNsgspai 28 ++++ +++++++i+N+ +++i ACZ98604.1|CBM3|CBM4|GH9 857 KQNEGTVKVQARITNEDWSDI 877 5677899**********9987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (895 residues searched) Target model(s): 1 (88 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 123.42 // Query: BGG65775.1|CBM3|CBM4|GH9 [L=817] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.2e-13 36.1 1.9 4.2e-13 36.1 1.9 3.0 2 CBM3.hmm Domain annotation for each model (and alignments): >> CBM3.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 36.1 1.9 4.2e-13 4.2e-13 11 87 .. 696 770 .. 690 771 .. 0.84 2 ? -0.4 0.3 0.1 0.1 7 28 .. 778 799 .. 773 801 .. 0.86 Alignments for each domain: == domain 1 score: 36.1 bits; conditional E-value: 4.2e-13 CBM3.hmm 11 tnsiepklkikNsgspaidlsdlkvRYyftldevkeagftcddaqvsvnyde...gasnvtakfsklskpksgadyYvei 87 +si+ ++ ++ ++++a+dls+l+++Yy+t+++ k+++f+cd+a +++ ++ + + vt++f+ +++ +Y+e+ BGG65775.1|CBM3|CBM4|GH9 696 GSSINQTYTLTPKTTQAVDLSKLSIKYYYTKNDTKTMNFWCDNAAAQLTVSPwyvAFNGVTGTFG-----SDTNGNYLEV 770 67888888888999********************************9999887644566777766.....5788888887 PP == domain 2 score: -0.4 bits; conditional E-value: 0.1 CBM3.hmm 7 nsattnsiepklkikNsgspai 28 +++t si+++++ N+ +++i BGG65775.1|CBM3|CBM4|GH9 778 LQPNTGSIQLQVRYANNDWSEI 799 578999*************987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (817 residues searched) Target model(s): 1 (88 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 122.86 // Query: ADZ82408.1|CBM3|CBM4|GH9 [L=887] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4e-14 39.4 0.7 4e-14 39.4 0.7 3.0 2 CBM3.hmm Domain annotation for each model (and alignments): >> CBM3.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 39.4 0.7 4e-14 4e-14 9 87 .. 764 840 .. 757 841 .. 0.82 2 ? -1.8 0.5 0.28 0.28 7 28 .. 848 869 .. 843 871 .. 0.83 Alignments for each domain: == domain 1 score: 39.4 bits; conditional E-value: 4e-14 CBM3.hmm 9 attnsiepklkikNsgspaidlsdlkvRYyftldevkeagftcddaqvsvnyde...gasnvtakfsklskpksgadyYvei 87 +t si+ ++ ++ ++ +aidls+l+++Yy+t+d+ k+++f+cd a +++ ++ + s vt++f+ ++ +Y+ei ADZ82408.1|CBM3|CBM4|GH9 764 TTGGSINQTYTLTPKSAQAIDLSKLSIKYYYTKDDTKTMNFWCDSAAAQLTVSPwysSFSGVTGTFG-----SDTDGSYLEI 840 56678888888888999*******************************9888887533566666666.....5777788887 PP == domain 2 score: -1.8 bits; conditional E-value: 0.28 CBM3.hmm 7 nsattnsiepklkikNsgspai 28 +++t s++++++ N+ ++ i ADZ82408.1|CBM3|CBM4|GH9 848 LQPNTGSVQLQVRYANNDWSNI 869 6889999999999999999987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (887 residues searched) Target model(s): 1 (88 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 143.94 // Query: QEH68101.1|CBM3|CBM4|GH9 [L=899] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.3e-13 36.1 1.7 4.3e-13 36.1 1.7 3.2 2 CBM3.hmm Domain annotation for each model (and alignments): >> CBM3.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 36.1 1.7 4.3e-13 4.3e-13 11 87 .. 778 852 .. 772 853 .. 0.84 2 ? -0.6 0.3 0.12 0.12 7 28 .. 860 881 .. 855 883 .. 0.86 Alignments for each domain: == domain 1 score: 36.1 bits; conditional E-value: 4.3e-13 CBM3.hmm 11 tnsiepklkikNsgspaidlsdlkvRYyftldevkeagftcddaqvsvnyde...gasnvtakfsklskpksgadyYvei 87 +si+ ++ ++ ++++a+dls+l+++Yy+t+++ k+++f+cd+a +++ ++ + + vt++f+ +++ +Y+e+ QEH68101.1|CBM3|CBM4|GH9 778 GSSINQTYTLIPKTTQAVDLSKLSIKYYYTKNDTKTMNFWCDNAAAQLTVSPwyvAFNGVTGTFG-----SDTNGNYLEV 852 67888888888999********************************9999887644566777766.....5788888887 PP == domain 2 score: -0.6 bits; conditional E-value: 0.12 CBM3.hmm 7 nsattnsiepklkikNsgspai 28 +++t si+++++ N+ +++i QEH68101.1|CBM3|CBM4|GH9 860 LQPNTGSIQLQVRYANNDWSEI 881 578999*************987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (899 residues searched) Target model(s): 1 (88 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 146.38 // [ok]