# hmmscan :: search sequence(s) against a profile database # HMMER 3.3.2 (Nov 2020); http://hmmer.org/ # Copyright (C) 2020 Howard Hughes Medical Institute. # Freely distributed under the BSD open source license. # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: /array2/siva/dbcansub_update/cazy2025/match_results/dbsub_data_2025/merged_clusters/CBM38/fasta_for_each_cluster/cluster_10.txt # target HMM database: merged_hmms/CBM38.hmm # per-dom hits tabular output: hmmscan_out/domain_result/CBM38/CBM38_cluster_10.out.dm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: QDU76755.1|CBM38|GH32 [L=649] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.5e-36 109.0 0.0 2.6e-35 107.6 0.0 1.8 1 CBM38.hmm Domain annotation for each model (and alignments): >> CBM38.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 107.6 0.0 2.6e-35 2.6e-35 4 128 .. 37 164 .. 35 165 .. 0.95 Alignments for each domain: == domain 1 score: 107.6 bits; conditional E-value: 2.6e-35 CBM38.hmm 4 dFetGdltgWtveGdafgagpvtdettgqegvinqeGkyllngfkngdsatGtltSptFtlgsgyinflvgGgkdpdkayvavvlavd 91 dFe ++ +W+veG+afg++p++++ +gq v ++eGk+l+n+f +gd +tG+ltSp+ +++++y +fl+gGg +d + ++l+vd QDU76755.1|CBM38|GH32 37 DFEGASYGDWKVEGEAFGTQPASGALSGQMDVSGYEGKQLVNTFLGGDRSTGRLTSPPIKIQQPYFHFLIGGGGYED--ETCMNLLVD 122 9************************************************************************9999..889999*** PP CBM38.hmm 92 gkvvrsatgrn.....seelervswDvseyagkklyievvDe 128 g+vvr+atg n se+l+rv wDv +++gk+ +++vD+ QDU76755.1|CBM38|GH32 123 GQVVRTATGPNrkpggSEHLQRVYWDVHDLIGKRGVLQIVDQ 164 ******999875555589***********************8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (649 residues searched) Target model(s): 1 (129 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 81.35 // Query: QDT72049.1|CBM38|GH32 [L=680] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.7e-35 107.6 0.1 6.3e-35 106.4 0.1 1.7 1 CBM38.hmm Domain annotation for each model (and alignments): >> CBM38.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 106.4 0.1 6.3e-35 6.3e-35 2 128 .. 37 175 .. 36 176 .. 0.94 Alignments for each domain: == domain 1 score: 106.4 bits; conditional E-value: 6.3e-35 CBM38.hmm 2 npdFetGdltgWtveGdafgagpvtdettgqegvi..nqeGkyllngfkng............dsatGtltSptFtlgsgyinflvgG 75 n+dFe G+l+gWt +Gdaf+ +p++++++ +g+ +eG+y++ gf+n d+a G+l Sp+Ft+ ++ i+fl+gG QDT72049.1|CBM38|GH32 37 NSDFEAGTLAGWTRSGDAFQFQPTQGDNPSARGREssAHEGEYWVGGFENHpnqdgqpggaftDDAIGELVSPEFTIRKSFISFLIGG 124 99************************999888877779**********444456669999**************************** PP CBM38.hmm 76 gkdpdkayvavvlavdgkvvrsatgrnseelervswDvseyagkklyievvDe 128 g++p ++ v+l dg+++ atg +se++++ s Dvs+++gk++++ ++D+ QDT72049.1|CBM38|GH32 125 GNHPG--QTGVKLRCDGQELDLATGADSETMSPSSHDVSKFLGKQAQLVIYDN 175 *****..8899999**************************************8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (680 residues searched) Target model(s): 1 (129 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 100.48 // Query: QEG43366.1|CBM38|GH32 [L=670] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.1e-36 110.2 0.1 1.2e-35 108.7 0.0 1.9 2 CBM38.hmm Domain annotation for each model (and alignments): >> CBM38.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 108.7 0.0 1.2e-35 1.2e-35 2 129 .] 30 169 .. 29 169 .. 0.92 2 ? -3.0 0.0 0.42 0.42 50 68 .. 282 301 .. 251 311 .. 0.65 Alignments for each domain: == domain 1 score: 108.7 bits; conditional E-value: 1.2e-35 CBM38.hmm 2 npdFetGdltgWtveGdafgagpvtdettgqegvi..nqeGkyllngf.kng............dsatGtltSptFtlgsgyinflvg 74 n+dFe+G+l+gWt+eG+af+ +p+++++t+ +++ n +G+ ++ g+ k d+ tGtltS++Ft+ ++yi+f++g QEG43366.1|CBM38|GH32 30 NSDFESGTLAGWTAEGEAFQVQPTKGDNTAARNREssNLQGEWWIGGYeK-YtgeigrpgeiagDQLTGTLTSQPFTIRRPYITFRIG 116 99***********************987776665557***********62.3356777777777************************ PP CBM38.hmm 75 GgkdpdkayvavvlavdgkvvrsatgrnseelervswDvseyagkklyievvDea 129 g+ p +v v+l+vdgk ++ atg +se++ vs+Dv+ y+g++++++v D+a QEG43366.1|CBM38|GH32 117 AGNLPG--QVGVKLLVDGKQIELATGVDSETMILVSADVRPYLGQQARLQVFDHA 169 ******..99*******************************************96 PP == domain 2 score: -3.0 bits; conditional E-value: 0.42 CBM38.hmm 50 gdsatGtltSptFtl.gsgy 68 d Gt+ S t ++ +++ QEG43366.1|CBM38|GH32 282 VDRRAGTIFSGTAVIdHNNS 301 46777777777777744444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (670 residues searched) Target model(s): 1 (129 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 98.09 // Query: QDT04708.1|CBM38|GH32 [L=677] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.8e-30 91.4 3.8 3.5e-30 91.0 2.0 2.1 2 CBM38.hmm Domain annotation for each model (and alignments): >> CBM38.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 91.0 2.0 3.5e-30 3.5e-30 2 129 .] 34 173 .. 33 173 .. 0.90 2 ? -2.5 0.0 0.29 0.29 50 74 .. 286 311 .. 259 321 .. 0.68 Alignments for each domain: == domain 1 score: 91.0 bits; conditional E-value: 3.5e-30 CBM38.hmm 2 npdFetGdltgWtveGdafgagpvtdettgqegvi..nqeGkyllngf..kng...........dsatGtltSptFtlgsgyinflvg 74 n+dFe+G+l+gWt+eG+af+ +p+ ++++ +++ n +G+ ++ g+ + + d+ tGtltS++Ft++++ + f++g QDT04708.1|CBM38|GH32 34 NSDFEQGTLDGWTAEGKAFAIQPTHGDNSKIRNREtsNLQGEWWIGGYerN-DgktghpgaiagDQLTGTLTSQSFTIQQPFLAFRIG 120 99******************99999855544333335***********862.246678888888************************ PP CBM38.hmm 75 GgkdpdkayvavvlavdgkvvrsatgrnseelervswDvseyagkklyievvDea 129 Gg+ p ++ v+l+ d++ ++ ++g +se++++ s Dv+ ++gk++++++ D+a QDT04708.1|CBM38|GH32 121 GGSLPG--QTGVRLLCDDRQIEMTSGVDSETMSNFSYDVTSLVGKSARLQIFDTA 173 ******..999******************************************85 PP == domain 2 score: -2.5 bits; conditional E-value: 0.29 CBM38.hmm 50 gdsatGtltSptFtl.gsgyinflvg 74 d + Gt+ S t ++ ++++ +vg QDT04708.1|CBM38|GH32 286 VDRQMGTIFSGTAVVdHNNSLGKQVG 311 47778888888888755555555555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (677 residues searched) Target model(s): 1 (129 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 46.35 // Query: BBO35249.1|CBM38|GH32 [L=680] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.6e-34 103.9 0.0 7.9e-34 102.8 0.0 1.6 1 CBM38.hmm Domain annotation for each model (and alignments): >> CBM38.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 102.8 0.0 7.9e-34 7.9e-34 2 128 .. 37 175 .. 36 176 .. 0.92 Alignments for each domain: == domain 1 score: 102.8 bits; conditional E-value: 7.9e-34 CBM38.hmm 2 npdFetGdltgWtveGdafgagpvtdettgqegvi..nqeGkyllngf..kng..........dsatGtltSptFtlgsgyinflvgG 75 n dFe+G l+gW veGdaf+++p++++++ +g+ eG++++ gf ++g d+a+Gtl Sp+Ft++++ i+fl+gG BBO35249.1|CBM38|GH32 37 NADFESGALEGWAVEGDAFQHQPTKGDNPQVRGREssALEGEFWIGGFekATGregrpgdaftDDAVGTLVSPEFTIKKPFISFLIGG 124 99************************9988877766699*********763337779999999************************* PP CBM38.hmm 76 gkdpdkayvavvlavdgkvvrsatgrnseelervswDvseyagkklyievvDe 128 g+++ v+l dg+++ atg++se+++r+s Dvs ++gk++++ v+D+ BBO35249.1|CBM38|GH32 125 GNHAG--KSGVKLRCDGEEIDLATGSDSETMSRTSYDVSRFLGKRAQLIVYDN 175 *****..6777788**************************************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (680 residues searched) Target model(s): 1 (129 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 105.93 // Query: QDU58341.1|CBM38|GH32 [L=742] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-30 92.8 1.4 1.2e-30 92.5 0.0 1.9 2 CBM38.hmm Domain annotation for each model (and alignments): >> CBM38.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 92.5 0.0 1.2e-30 1.2e-30 1 129 [] 96 236 .. 96 236 .. 0.92 2 ? -3.5 0.4 0.6 0.6 5 17 .. 454 466 .. 453 475 .. 0.82 Alignments for each domain: == domain 1 score: 92.5 bits; conditional E-value: 1.2e-30 CBM38.hmm 1 enpdFetGdltgWtveGdafgagpvtdettgqegvi..nqeGkyllngf............kngdsatGtltSptFtlgsgyinflvg 74 en++Fe+G+l++Wt eG+af+ +p++++++ +g+ +eG+y++ g+ +gd+ tGtltS++F+++++y++fl++ QDU58341.1|CBM38|GH32 96 ENSGFESGTLHNWTPEGEAFAVQPTKGDNPSLRGREssWHEGEYWVGGYeaytkdsgtpgqTRGDQFTGTLTSTEFVIQQPYLSFLIS 183 599************************999888777679**********877766665555556************************ PP CBM38.hmm 75 GgkdpdkayvavvlavdgkvvrsatgrnseelervswDvseyagkklyievvDea 129 Ggk+p k+ v++v + ++++ atg +se+l+r +++vs+++g+++++ ++D++ QDU58341.1|CBM38|GH32 184 GGKQPGKLGVKLVCGDIEREL--ATGCDSETLRRCNAEVSDLVGRRAKLVIYDNS 236 *********************..******************************95 PP == domain 2 score: -3.5 bits; conditional E-value: 0.6 CBM38.hmm 5 FetGdltgWtveG 17 F +++lt+Wt QDU58341.1|CBM38|GH32 454 FTSTNLTEWTFAS 466 88999****9865 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (742 residues searched) Target model(s): 1 (129 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 102.76 // Query: QJE98243.1|CBM38|GH32 [L=1263] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.9e-32 96.2 0.1 3.7e-31 94.2 0.1 2.2 1 CBM38.hmm Domain annotation for each model (and alignments): >> CBM38.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 94.2 0.1 3.7e-31 3.7e-31 2 129 .] 30 169 .. 29 169 .. 0.89 Alignments for each domain: == domain 1 score: 94.2 bits; conditional E-value: 3.7e-31 CBM38.hmm 2 npdFetGdltgWtveGdafgagpvtdettgqegvi..nqeGkyllngfkng............dsatGtltSptFtlgsgyinflvgG 75 n+dFe G+l++Wt++Gdaf+++p+ +++t +g + +++G+y++ +f+n d atGtl S++Ft++++yi+f++gG QJE98243.1|CBM38|GH32 30 NSDFEAGTLANWTASGDAFTRQPTFGDNTLARGNVscGKQGDYWIGTFENYdgvtgapgnvrgDGATGTLSSQSFTITKRYITFRMGG 117 99************************88887777779***********444456677777777************************* PP CBM38.hmm 76 gkdpdkayvavvlavdgkvvrsatgrnseelervswDvseyagkklyievvDea 129 g+ p++a +++ +++ + tg nse++ ++++D+++++gk++ i + D+a QJE98243.1|CBM38|GH32 118 GNLPAQAGAKLICESQEYAL--GTGFNSEAMFPITFDAQALMGKTASIVIFDNA 169 *****877777777766666..9*****************************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1263 residues searched) Target model(s): 1 (129 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 149.84 // [ok]