# hmmscan :: search sequence(s) against a profile database # HMMER 3.3.2 (Nov 2020); http://hmmer.org/ # Copyright (C) 2020 Howard Hughes Medical Institute. # Freely distributed under the BSD open source license. # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: /array2/siva/dbcansub_update/cazy2025/match_results/dbsub_data_2025/merged_clusters/CBM35/fasta_for_each_cluster/cluster_93.txt # target HMM database: merged_hmms/CBM35.hmm # per-dom hits tabular output: hmmscan_out/domain_result/CBM35/CBM35_cluster_93.out.dm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: UYU39143.1|CBM35|GH2_18 [L=1291] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5e-14 39.8 8.0 1.1e-11 32.2 0.4 3.8 4 CBM35.hmm Domain annotation for each model (and alignments): >> CBM35.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.2 0.4 5.7e-12 1.1e-11 2 107 .. 32 138 .. 31 147 .. 0.80 2 ? -2.2 0.0 0.26 0.52 65 76 .. 576 587 .. 572 613 .. 0.76 3 ? -1.3 0.1 0.14 0.27 49 74 .. 1054 1079 .. 1039 1113 .. 0.79 4 ! 9.8 0.3 4.9e-05 9.7e-05 62 108 .. 1137 1185 .. 1092 1194 .. 0.77 Alignments for each domain: == domain 1 score: 32.2 bits; conditional E-value: 5.7e-12 CBM35.hmm 2 eAedasltgvsvntnhagysGsgfvdglqaagdavtfn.vdvpkaGsYelslrYangtgstktlsvvvnGtkvsevtfpst.gnwd 85 eA++a+l+g+ + ++ + ++v+++ + g++++++ ++++kaG+Y++ ++Y + + +++ +s++vn+ + v+fp+t ++w+ UYU39143.1|CBM35|GH2_18 32 EAANAQLKGN--GPTISEHENGKIVENI-TFGSSLEYTeIEIEKAGTYKFDIKYLT-GDTNRPMSITVNNYDPVIVQFPQTtASWG 113 6777777773..2222333334556555.7788899888*****************.6**********************999**9 PP CBM35.hmm 86 tw...gtaagtvtLkaGkntitiks 107 + +ta++ ++ + Gkn+i+i+ UYU39143.1|CBM35|GH2_18 114 NPadaNTATTYLHFDTGKNNIKITP 138 987667888889999*******975 PP == domain 2 score: -2.2 bits; conditional E-value: 0.26 CBM35.hmm 65 svvvnGtkvsev 76 +v+vnG++v++ UYU39143.1|CBM35|GH2_18 576 EVYVNGKQVGTH 587 699****99953 PP == domain 3 score: -1.3 bits; conditional E-value: 0.14 CBM35.hmm 49 elslrYangtgstktlsvvvnGtkvs 74 +++++Y n+t ++ ++++ n+t+ + UYU39143.1|CBM35|GH2_18 1054 KVQWKYTNNTPAEDWNTITFNDTSWN 1079 68889999988999999999988754 PP == domain 4 score: 9.8 bits; conditional E-value: 4.9e-05 CBM35.hmm 62 ktlsvvvnGtkvsevtfpstgnwdtw.gtaagtvtLkaGkntitiks..d 108 +v++nG + + t t+n++t+ +++ ++tLkaG+n i++k UYU39143.1|CBM35|GH2_18 1137 DDCEVYINGVLAFS-TTGYTSNYTTVdVSKEAKATLKAGENLIAVKCtqF 1185 55678999887654.44555678888678999************997653 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1291 residues searched) Target model(s): 2 (268 nodes) Passed MSV filter: 1 (0.5); expected 0.0 (0.02) Passed bias filter: 1 (0.5); expected 0.0 (0.02) Passed Vit filter: 1 (0.5); expected 0.0 (0.001) Passed Fwd filter: 1 (0.5); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 142.42 // Query: QUT74822.1|CBM0|CBM35|GH2_18 [L=1293] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.5e-14 39.9 7.2 1.6e-11 31.7 0.2 3.8 4 CBM35.hmm Domain annotation for each model (and alignments): >> CBM35.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.7 0.2 7.8e-12 1.6e-11 23 107 .. 53 140 .. 33 151 .. 0.79 2 ? -2.2 0.0 0.26 0.52 65 76 .. 578 589 .. 574 615 .. 0.76 3 ? -1.3 0.1 0.14 0.27 49 74 .. 1056 1081 .. 1041 1115 .. 0.79 4 ! 9.8 0.3 4.9e-05 9.7e-05 62 108 .. 1139 1187 .. 1094 1196 .. 0.77 Alignments for each domain: == domain 1 score: 31.7 bits; conditional E-value: 7.8e-12 CBM35.hmm 23 sgfvdglqaagdavtfn.vdvpkaGsYelslrYangtgstktlsvvvnGtkvsevtfpst.gnwdtw...gtaagtvtLka 98 ++v+++ + g++++++ ++++kaG+Y++ ++Y + + +++ +s++vn+ + v+fp+t ++w++ +ta++ ++ + QUT74822.1|CBM0|CBM35|GH2_18 53 GKIVENI-TFGSSLEYTeIEIEKAGTYKFDIKYLT-GDTNRPMSITVNNYDPVIVQFPQTtASWGNPadaNTATTYLHFDT 131 3445444.6788888888*****************.6**********************999**9987667888889999* PP CBM35.hmm 99 Gkntitiks 107 Gkn+i+i+ QUT74822.1|CBM0|CBM35|GH2_18 132 GKNNIKITP 140 ******985 PP == domain 2 score: -2.2 bits; conditional E-value: 0.26 CBM35.hmm 65 svvvnGtkvsev 76 +v+vnG++v++ QUT74822.1|CBM0|CBM35|GH2_18 578 EVYVNGKQVGTH 589 699****99953 PP == domain 3 score: -1.3 bits; conditional E-value: 0.14 CBM35.hmm 49 elslrYangtgstktlsvvvnGtkvs 74 +++++Y n+t ++ ++++ n+t+ + QUT74822.1|CBM0|CBM35|GH2_18 1056 KVQWKYTNNTPAEDWNTITFNDTSWN 1081 68889999988999999999988754 PP == domain 4 score: 9.8 bits; conditional E-value: 4.9e-05 CBM35.hmm 62 ktlsvvvnGtkvsevtfpstgnwdtw.gtaagtvtLkaGkntitiks..d 108 +v++nG + + t t+n++t+ +++ ++tLkaG+n i++k QUT74822.1|CBM0|CBM35|GH2_18 1139 DDCEVYINGVLAFS-TTGYTSNYTTVdVSKEAKATLKAGENLIAVKCtqF 1187 55678999887654.44555678888678999************997653 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1293 residues searched) Target model(s): 2 (268 nodes) Passed MSV filter: 1 (0.5); expected 0.0 (0.02) Passed bias filter: 1 (0.5); expected 0.0 (0.02) Passed Vit filter: 1 (0.5); expected 0.0 (0.001) Passed Fwd filter: 1 (0.5); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 143.71 // Query: UBD65515.1|CBM0|CBM35|GH2_18 [L=1293] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5e-14 39.8 8.0 1.1e-11 32.2 0.4 3.8 4 CBM35.hmm Domain annotation for each model (and alignments): >> CBM35.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.2 0.4 5.7e-12 1.1e-11 2 107 .. 34 140 .. 33 149 .. 0.80 2 ? -2.2 0.0 0.26 0.52 65 76 .. 578 589 .. 574 615 .. 0.76 3 ? -1.3 0.1 0.14 0.27 49 74 .. 1056 1081 .. 1041 1115 .. 0.79 4 ! 9.8 0.3 4.9e-05 9.7e-05 62 108 .. 1139 1187 .. 1094 1196 .. 0.77 Alignments for each domain: == domain 1 score: 32.2 bits; conditional E-value: 5.7e-12 CBM35.hmm 2 eAedasltgvsvntnhagysGsgfvdglqaagdavtfn.vdvpkaGsYelslrYangtgstktlsvvvnGtkvsevtfpst 81 eA++a+l+g+ + ++ + ++v+++ + g++++++ ++++kaG+Y++ ++Y + + +++ +s++vn+ + v+fp+t UBD65515.1|CBM0|CBM35|GH2_18 34 EAANAQLKGN--GPTISEHENGKIVENI-TFGSSLEYTeIEIEKAGTYKFDIKYLT-GDTNRPMSITVNNYDPVIVQFPQT 110 6777777773..2222333334556555.7788899888*****************.6**********************9 PP CBM35.hmm 82 .gnwdtw...gtaagtvtLkaGkntitiks 107 ++w++ +ta++ ++ + Gkn+i+i+ UBD65515.1|CBM0|CBM35|GH2_18 111 tASWGNPadaNTATTYLHFDTGKNNIKITP 140 99**9987667888889999*******975 PP == domain 2 score: -2.2 bits; conditional E-value: 0.26 CBM35.hmm 65 svvvnGtkvsev 76 +v+vnG++v++ UBD65515.1|CBM0|CBM35|GH2_18 578 EVYVNGKQVGTH 589 699****99953 PP == domain 3 score: -1.3 bits; conditional E-value: 0.14 CBM35.hmm 49 elslrYangtgstktlsvvvnGtkvs 74 +++++Y n+t ++ ++++ n+t+ + UBD65515.1|CBM0|CBM35|GH2_18 1056 KVQWKYTNNTPAEDWNTITFNDTSWN 1081 68889999988999999999988754 PP == domain 4 score: 9.8 bits; conditional E-value: 4.9e-05 CBM35.hmm 62 ktlsvvvnGtkvsevtfpstgnwdtw.gtaagtvtLkaGkntitiks..d 108 +v++nG + + t t+n++t+ +++ ++tLkaG+n i++k UBD65515.1|CBM0|CBM35|GH2_18 1139 DDCEVYINGVLAFS-TTGYTSNYTTVdVSKEAKATLKAGENLIAVKCtqF 1187 55678999887654.44555678888678999************997653 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1293 residues searched) Target model(s): 2 (268 nodes) Passed MSV filter: 1 (0.5); expected 0.0 (0.02) Passed bias filter: 1 (0.5); expected 0.0 (0.02) Passed Vit filter: 1 (0.5); expected 0.0 (0.001) Passed Fwd filter: 1 (0.5); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 141.91 // Query: UYU46467.1|CBM0|CBM35|GH2_18 [L=1291] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.1e-14 40.0 8.1 8.7e-12 32.5 0.4 3.8 4 CBM35.hmm Domain annotation for each model (and alignments): >> CBM35.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.5 0.4 4.4e-12 8.7e-12 2 107 .. 32 138 .. 31 147 .. 0.80 2 ? -2.2 0.0 0.26 0.52 65 76 .. 576 587 .. 572 613 .. 0.76 3 ? -1.3 0.1 0.14 0.27 49 74 .. 1054 1079 .. 1039 1113 .. 0.79 4 ! 9.8 0.3 4.9e-05 9.7e-05 62 108 .. 1137 1185 .. 1092 1194 .. 0.77 Alignments for each domain: == domain 1 score: 32.5 bits; conditional E-value: 4.4e-12 CBM35.hmm 2 eAedasltgvsvntnhagysGsgfvdglqaagdavtfn.vdvpkaGsYelslrYangtgstktlsvvvnGtkvsevtfpst 81 eA++a+l+g+ + ++ + ++v+++ + g++++++ ++++kaG+Y+++++Y + + +++ +s++vn+ + v+fp+t UYU46467.1|CBM0|CBM35|GH2_18 32 EAANAQLKGN--GPTISEHENGKIVENI-TFGSSLEYTeIEIEKAGTYKFEIKYLT-GDTNRPMSITVNNYDPVIVQFPQT 108 6777777773..2222333334556555.7788899888*****************.6**********************9 PP CBM35.hmm 82 .gnwdtw...gtaagtvtLkaGkntitiks 107 ++w++ +ta++ ++ + Gkn+i+i+ UYU46467.1|CBM0|CBM35|GH2_18 109 tASWGNPadaNTATTYLHFDTGKNNIKITP 138 99**9987667888889999*******975 PP == domain 2 score: -2.2 bits; conditional E-value: 0.26 CBM35.hmm 65 svvvnGtkvsev 76 +v+vnG++v++ UYU46467.1|CBM0|CBM35|GH2_18 576 EVYVNGKQVGTH 587 699****99953 PP == domain 3 score: -1.3 bits; conditional E-value: 0.14 CBM35.hmm 49 elslrYangtgstktlsvvvnGtkvs 74 +++++Y n+t ++ ++++ n+t+ + UYU46467.1|CBM0|CBM35|GH2_18 1054 KVQWKYTNNTPAEDWNTITFNDTSWN 1079 68889999988999999999988754 PP == domain 4 score: 9.8 bits; conditional E-value: 4.9e-05 CBM35.hmm 62 ktlsvvvnGtkvsevtfpstgnwdtw.gtaagtvtLkaGkntitiks..d 108 +v++nG + + t t+n++t+ +++ ++tLkaG+n i++k UYU46467.1|CBM0|CBM35|GH2_18 1137 DDCEVYINGVLAFS-TTGYTSNYTTVdVSKEAKATLKAGENLIAVKCtqF 1185 55678999887654.44555678888678999************997653 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1291 residues searched) Target model(s): 2 (268 nodes) Passed MSV filter: 1 (0.5); expected 0.0 (0.02) Passed bias filter: 1 (0.5); expected 0.0 (0.02) Passed Vit filter: 1 (0.5); expected 0.0 (0.001) Passed Fwd filter: 1 (0.5); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 148.08 // Query: WMS10403.1|CBM35|GH2_18 [L=1291] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5e-14 39.8 8.0 1.1e-11 32.2 0.4 3.8 4 CBM35.hmm Domain annotation for each model (and alignments): >> CBM35.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.2 0.4 5.7e-12 1.1e-11 2 107 .. 32 138 .. 31 147 .. 0.80 2 ? -2.2 0.0 0.26 0.52 65 76 .. 576 587 .. 572 613 .. 0.76 3 ? -1.3 0.1 0.14 0.27 49 74 .. 1054 1079 .. 1039 1113 .. 0.79 4 ! 9.8 0.3 4.9e-05 9.7e-05 62 108 .. 1137 1185 .. 1092 1194 .. 0.77 Alignments for each domain: == domain 1 score: 32.2 bits; conditional E-value: 5.7e-12 CBM35.hmm 2 eAedasltgvsvntnhagysGsgfvdglqaagdavtfn.vdvpkaGsYelslrYangtgstktlsvvvnGtkvsevtfpst.gnwd 85 eA++a+l+g+ + ++ + ++v+++ + g++++++ ++++kaG+Y++ ++Y + + +++ +s++vn+ + v+fp+t ++w+ WMS10403.1|CBM35|GH2_18 32 EAANAQLKGN--GPTISEHENGKIVENI-TFGSSLEYTeIEIEKAGTYKFDIKYLT-GDTNRPMSITVNNYDPVIVQFPQTtASWG 113 6777777773..2222333334556555.7788899888*****************.6**********************999**9 PP CBM35.hmm 86 tw...gtaagtvtLkaGkntitiks 107 + +ta++ ++ + Gkn+i+i+ WMS10403.1|CBM35|GH2_18 114 NPadaNTATTYLHFDTGKNNIKITP 138 987667888889999*******975 PP == domain 2 score: -2.2 bits; conditional E-value: 0.26 CBM35.hmm 65 svvvnGtkvsev 76 +v+vnG++v++ WMS10403.1|CBM35|GH2_18 576 EVYVNGKQVGTH 587 699****99953 PP == domain 3 score: -1.3 bits; conditional E-value: 0.14 CBM35.hmm 49 elslrYangtgstktlsvvvnGtkvs 74 +++++Y n+t ++ ++++ n+t+ + WMS10403.1|CBM35|GH2_18 1054 KVQWKYTNNTPAEDWNTITFNDTSWN 1079 68889999988999999999988754 PP == domain 4 score: 9.8 bits; conditional E-value: 4.9e-05 CBM35.hmm 62 ktlsvvvnGtkvsevtfpstgnwdtw.gtaagtvtLkaGkntitiks..d 108 +v++nG + + t t+n++t+ +++ ++tLkaG+n i++k WMS10403.1|CBM35|GH2_18 1137 DDCEVYINGVLAFS-TTGYTSNYTTVdVSKEAKATLKAGENLIAVKCtqF 1185 55678999887654.44555678888678999************997653 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1291 residues searched) Target model(s): 2 (268 nodes) Passed MSV filter: 1 (0.5); expected 0.0 (0.02) Passed bias filter: 1 (0.5); expected 0.0 (0.02) Passed Vit filter: 1 (0.5); expected 0.0 (0.001) Passed Fwd filter: 1 (0.5); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 148.91 // Query: UBD16564.1|CBM0|CBM35|GH2_18 [L=1293] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.1e-14 40.0 8.1 8.8e-12 32.5 0.4 3.8 4 CBM35.hmm Domain annotation for each model (and alignments): >> CBM35.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.5 0.4 4.4e-12 8.8e-12 2 107 .. 34 140 .. 33 149 .. 0.80 2 ? -2.2 0.0 0.26 0.52 65 76 .. 578 589 .. 574 615 .. 0.76 3 ? -1.3 0.1 0.14 0.27 49 74 .. 1056 1081 .. 1041 1115 .. 0.79 4 ! 9.8 0.3 4.9e-05 9.7e-05 62 108 .. 1139 1187 .. 1094 1196 .. 0.77 Alignments for each domain: == domain 1 score: 32.5 bits; conditional E-value: 4.4e-12 CBM35.hmm 2 eAedasltgvsvntnhagysGsgfvdglqaagdavtfn.vdvpkaGsYelslrYangtgstktlsvvvnGtkvsevtfpst 81 eA++a+l+g+ + ++ + ++v+++ + g++++++ ++++kaG+Y+++++Y + + +++ +s++vn+ + v+fp+t UBD16564.1|CBM0|CBM35|GH2_18 34 EAANAQLKGN--GPTISEHENGKIVENI-TFGSSLEYTeIEIEKAGTYKFEIKYLT-GDTNRPMSITVNNYDPVIVQFPQT 110 6777777773..2222333334556555.7788899888*****************.6**********************9 PP CBM35.hmm 82 .gnwdtw...gtaagtvtLkaGkntitiks 107 ++w++ +ta++ ++ + Gkn+i+i+ UBD16564.1|CBM0|CBM35|GH2_18 111 tASWGNPadaNTATTYLHFDTGKNNIKITP 140 99**9987667888889999*******975 PP == domain 2 score: -2.2 bits; conditional E-value: 0.26 CBM35.hmm 65 svvvnGtkvsev 76 +v+vnG++v++ UBD16564.1|CBM0|CBM35|GH2_18 578 EVYVNGKQVGTH 589 699****99953 PP == domain 3 score: -1.3 bits; conditional E-value: 0.14 CBM35.hmm 49 elslrYangtgstktlsvvvnGtkvs 74 +++++Y n+t ++ ++++ n+t+ + UBD16564.1|CBM0|CBM35|GH2_18 1056 KVQWKYTNNTPAEDWNTITFNDTSWN 1081 68889999988999999999988754 PP == domain 4 score: 9.8 bits; conditional E-value: 4.9e-05 CBM35.hmm 62 ktlsvvvnGtkvsevtfpstgnwdtw.gtaagtvtLkaGkntitiks..d 108 +v++nG + + t t+n++t+ +++ ++tLkaG+n i++k UBD16564.1|CBM0|CBM35|GH2_18 1139 DDCEVYINGVLAFS-TTGYTSNYTTVdVSKEAKATLKAGENLIAVKCtqF 1187 55678999887654.44555678888678999************997653 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1293 residues searched) Target model(s): 2 (268 nodes) Passed MSV filter: 1 (0.5); expected 0.0 (0.02) Passed bias filter: 1 (0.5); expected 0.0 (0.02) Passed Vit filter: 1 (0.5); expected 0.0 (0.001) Passed Fwd filter: 1 (0.5); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: 148.06 // [ok]