# hmmscan :: search sequence(s) against a profile database # HMMER 3.3.2 (Nov 2020); http://hmmer.org/ # Copyright (C) 2020 Howard Hughes Medical Institute. # Freely distributed under the BSD open source license. # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: /array2/siva/dbcansub_update/cazy2025/match_results/dbsub_data_2025/merged_clusters/CBM35/fasta_for_each_cluster/cluster_54.txt # target HMM database: merged_hmms/CBM35.hmm # per-dom hits tabular output: hmmscan_out/domain_result/CBM35/CBM35_cluster_54.out.dm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: QAA33452.1|CBM35 [L=513] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.7e-35 109.0 6.7 1.7e-35 109.0 6.7 2.9 2 CBM35.hmm Domain annotation for each model (and alignments): >> CBM35.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 109.0 6.7 8.5e-36 1.7e-35 1 118 [. 54 174 .. 54 175 .. 0.98 2 ! 2.8 2.2 0.0072 0.014 3 66 .. 362 431 .. 359 461 .. 0.70 Alignments for each domain: == domain 1 score: 109.0 bits; conditional E-value: 8.5e-36 CBM35.hmm 1 yeAedasltgvsvntnhagysGsgfvdglqaagdavtfnvdvpkaGsYelslrYangtgstktlsvvvnGtkvsevtfpstgnwdtwgtaagt 93 yeAe+asl +vs++tnhagysG+gf+dg+++ gd+v fnv v ++ +Y+l+l+Y+n tg+t++++v+v+G+ vs++ tg+wd+w+t+++ QAA33452.1|CBM35 54 YEAESASLHNVSIDTNHAGYSGTGFIDGFAEVGDYVDFNVSVGTTQDYTLRLKYSNYTGATNVREVYVDGKFVSNAYCSDTGSWDSWKTTDVG 146 9******************************************************************************************** PP CBM35.hmm 94 vtLkaGkntitiks...dwGwinldsle 118 +L+aG++t+++ + G+inld+l QAA33452.1|CBM35 147 TNLTAGTHTVRVALnnsKDGAINLDNLV 174 ***********99888999******995 PP == domain 2 score: 2.8 bits; conditional E-value: 0.0072 CBM35.hmm 3 Aedasltg.vsvntnhagysGsgfvdglqaagda...vtfn..vdvpkaGsYelslrYangtgstktlsv 66 A d+ ++ +s++++ ++Gsg ++ ++ +++ v f+ v+vp++ s ++ + a g++ ++++s+ QAA33452.1|CBM35 362 ANDGDSNTsSSTCSSWYTFDGSGSLKNNANVSAQnvsVAFDqkVTVPAGSSQNVYFYVALGSSLSNVQSI 431 455655556899999999*****999887666655558887779****9999999988886555555554 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (513 residues searched) Target model(s): 2 (268 nodes) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 1 (0.5); expected 0.0 (0.001) Passed Fwd filter: 1 (0.5); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 124.45 // Query: QNK40541.1|CBM35|GH15 [L=1041] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.3e-34 104.5 9.1 4.3e-34 104.5 9.1 3.0 3 CBM35.hmm Domain annotation for each model (and alignments): >> CBM35.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 104.5 9.1 2.2e-34 4.3e-34 1 118 [. 43 163 .. 43 164 .. 0.98 2 ? -3.0 0.2 0.44 0.87 11 47 .. 359 400 .. 347 406 .. 0.53 3 ? -2.2 0.8 0.24 0.49 17 86 .. 908 979 .. 898 986 .. 0.64 Alignments for each domain: == domain 1 score: 104.5 bits; conditional E-value: 2.2e-34 CBM35.hmm 1 yeAedasltgvsvntnhagysGsgfvdglqaagdavtfnvdvpkaGsYelslrYangtgstktlsvvvnGtkvsevtfpstgnwdtwg 88 yeAe+asl++v++ntnh gy+Gsgfvdg+ ++gd+v+f++++ +a++ +l++rY n tg+t++++++v+G+ +s++ f tg+wd w+ QNK40541.1|CBM35|GH15 43 YEAETASLNNVTTNTNHNGYTGSGFVDGFGDTGDSVQFTINISTAEDTTLRFRYTNYTGATNVREIYVDGNFISNAYFADTGSWDIWN 130 9*************************************************************************************** PP CBM35.hmm 89 taagtvtLkaGkntitiks...dwGwinldsle 118 t+++ L+ G++t+++ + G+inld+l QNK40541.1|CBM35|GH15 131 TTDVGTALSSGTHTVKVAVensSDGYINLDNLV 163 *****************999999*******995 PP == domain 2 score: -3.0 bits; conditional E-value: 0.44 CBM35.hmm 11 vsvntnhagysGsgfvdglqaagda.....vtfnvdvpkaGs 47 +++++ ++Gsg ++ ++ +++ + +v++p++G+ QNK40541.1|CBM35|GH15 359 SQTCSPWYTFDGSGTLKNNSSVSAQdvsaaFEQTVTIPAGGT 400 445555555667776666554443333322555677776665 PP == domain 3 score: -2.2 bits; conditional E-value: 0.24 CBM35.hmm 17 hagysGsgfvdglqaagdavtfnvdvpkaGsYelslrYangtgstktlsvvvnGtkvs.evtfpst..gnwdt 86 + +++ s + ++++++ ++ t +++ + G ++ + + ++++++ ++ +v G++ s + t+ s +wdt QNK40541.1|CBM35|GH15 908 QNNFKVSVYTEDFSNSASTSTKTIHDSSLG-RNMAFLFTRSNTDSAYNKYTVSGGNWSlNKTISSViaPQWDT 979 555777777777776666666666655555.466666666678888899999888877633333332256665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1041 residues searched) Target model(s): 2 (268 nodes) Passed MSV filter: 1 (0.5); expected 0.0 (0.02) Passed bias filter: 1 (0.5); expected 0.0 (0.02) Passed Vit filter: 1 (0.5); expected 0.0 (0.001) Passed Fwd filter: 1 (0.5); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 244.63 // Query: QUH30053.1|CBM35|GH15|GH66 [L=1822] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.1e-51 159.1 9.5 4.9e-32 97.8 0.1 4.4 3 CBM35.hmm Domain annotation for each model (and alignments): >> CBM35.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.6 0.2 0.33 0.66 5 23 .. 91 109 .. 42 138 .. 0.61 2 ! 64.4 0.8 5.7e-22 1.1e-21 1 119 [] 429 559 .. 429 559 .. 0.89 3 ! 97.8 0.1 2.5e-32 4.9e-32 1 119 [] 777 898 .. 777 898 .. 0.98 Alignments for each domain: == domain 1 score: -2.6 bits; conditional E-value: 0.33 CBM35.hmm 5 dasltgvsvntnhagysGs 23 +a++ +v+ ++ + +y+G+ QUH30053.1|CBM35|GH15|GH66 91 TATTHTVTWTAPSNNYTGY 109 2333344444444444444 PP == domain 2 score: 64.4 bits; conditional E-value: 5.7e-22 CBM35.hmm 1 yeAedasltgvsvntnhagysGsgfvdglqaagdavtfnvdvpkaGsYelslrYangtgstktlsvvvnGtkvs........e 75 yeAe+asl+g++ ++ +G+++++g+++agd+ fn+ vp++G Y+l +r++ng ++ + ++++v+++kv + QUH30053.1|CBM35|GH15|GH66 429 YEAENASLSGLTSGND----NGTTYITGFDSAGDSADFNISVPEDGVYTLVFRFSNGASARADKNIYVDNEKVMtayfdltrT 507 9*********877665....7****************************************************9888888877 PP CBM35.hmm 76 vtfpstgnwdtw.g....taagtvtLkaGkntitiks...dwGwinldslel 119 +p++ +w+++ + t +t++L+aG+++i++++ ++G i +ds++l QUH30053.1|CBM35|GH15|GH66 508 GLMPANPSWSNYsNeaafTDPKTLYLTAGNHSIKVQHdsdNTGDIRVDSVTL 559 77899999999853122245589****************9********9986 PP == domain 3 score: 97.8 bits; conditional E-value: 2.5e-32 CBM35.hmm 1 yeAedasltgvsvntnhagysGsgfvdglqaagdavtfnvdvpkaGsYelslrYangtgstktlsvvvnGtkvsevtfpstgn 83 yeAed + v +n++h gy+Gsgfvd + ++ d+v+f+++v+++G+Y+l+++Yan+tgs+ +++++v+++++++++f+ ++ QUH30053.1|CBM35|GH15|GH66 777 YEAEDSIKKDVGTNNDHNGYTGSGFVDSYGETWDSVSFDIEVEEEGDYTLRFSYANATGSECSRELIVDNQNKGKISFQPLSD 859 9********************************************************************************** PP CBM35.hmm 84 wdtwgtaagtvtLkaGkntitiks...dwGwinldslel 119 wdtwg a++ v+L G++ + + +G+inld+l++ QUH30053.1|CBM35|GH15|GH66 860 WDTWGIAEKGVHLLPGRHRLVVLVtheYTGFINLDNLRV 898 ******************9888777899********986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1822 residues searched) Target model(s): 2 (268 nodes) Passed MSV filter: 1 (0.5); expected 0.0 (0.02) Passed bias filter: 1 (0.5); expected 0.0 (0.02) Passed Vit filter: 1 (0.5); expected 0.0 (0.001) Passed Fwd filter: 1 (0.5); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 323.80 // Query: QNK40542.1|CBM35|GH66 [L=919] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.6e-47 145.3 8.7 4.3e-34 104.5 0.1 5.0 5 CBM35.hmm Domain annotation for each model (and alignments): >> CBM35.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.9 0.3 0.098 0.2 19 104 .. 97 140 .. 79 171 .. 0.56 2 ? -1.1 1.6 0.12 0.23 16 86 .. 336 408 .. 330 416 .. 0.68 3 ! 51.6 4.7 5.2e-18 1e-17 1 119 [] 447 578 .. 447 578 .. 0.84 4 ? -2.8 0.0 0.4 0.79 25 40 .. 759 774 .. 745 779 .. 0.69 5 ! 104.5 0.1 2.1e-34 4.3e-34 2 119 .] 797 917 .. 796 917 .. 0.97 Alignments for each domain: == domain 1 score: -0.9 bits; conditional E-value: 0.098 CBM35.hmm 19 gysGsgfvdglqaagdavtfnvdvpkaGsYelslrYangtgstktlsvvvnGtkvsevtfpstgnwdtwgtaagtvtLkaGkntit 104 + s + v + g +++++ d+ + Y ++++ n G+ ++t QNK40542.1|CBM35|GH66 97 ESSENVTVAAGGTVGHNLSWQCDSADYTGYLVRVSLGN------------------------------------------GSTKVT 140 44444444444444444444444444444444444444..........................................333332 PP == domain 2 score: -1.1 bits; conditional E-value: 0.12 CBM35.hmm 16 nhagysGsgf..vdglqaagdavtfnvdvpkaGsYelslrYangtgstktlsvvvnGtkvs.evtfpstgnwdt 86 n+ +ysG+++ + +++ ++++ n +++++ + ++++ n ++++ + +++ n+ ++ +++fp ++ w++ QNK40542.1|CBM35|GH66 336 NYYDYSGNSVdlANSFSSYVNEIKQNLTANNSSKNYITMNAVN-GAASPNDDFSSNDIIKNaNTDFPFSEIWEN 408 5566666653225666666667888888888888888888888.577777777777765555777777777776 PP == domain 3 score: 51.6 bits; conditional E-value: 5.2e-18 CBM35.hmm 1 yeAedasltgvsvntnhagysGsgfvdglqaagdavtfnvdvpkaGsYelslrYangtgstktlsvvvnGtkvs........evtfps 80 y+Ae+++l+gv t++ ++v+g++++gd+ +++v++p++G+Y+l + +ngt + +++s++v+Gtk + +p+ QNK40542.1|CBM35|GH66 447 YQAESGTLSGVHSGTEN----NVTYVTGFDETGDYSSYTVQAPETGTYSLVFLASNGTDTRAQKSIYVDGTKTMvanfdstrTGLIPA 530 9*********8666654....489*************************************************966666655455556 PP CBM35.hmm 81 tgnwdtw.....gtaagtvtLkaGkntitiks....dwGwinldslel 119 +w ++ t+ +t++L++G++ti+i++ G i lds++l QNK40542.1|CBM35|GH66 531 DPSWYQYsaessFTTPKTLYLTQGTHTIRIQQdsdnAGGDIRLDSITL 578 6677776432222567899*************999888999****987 PP == domain 4 score: -2.8 bits; conditional E-value: 0.4 CBM35.hmm 25 fvdglqaagdavtfnv 40 + +++g++vtf+v QNK40542.1|CBM35|GH66 759 YTVSTDSNGKYVTFTV 774 4445567777777777 PP == domain 5 score: 104.5 bits; conditional E-value: 2.1e-34 CBM35.hmm 2 eAedasltgvsvntnhagysGsgfvdglqaagdavtfnvdvpkaGsYelslrYangtgstktlsvvvnGtkvsevtfpstgnwdtwgt 89 eAe+ l+gvs+nt+h+gy+G+gfvd + + ++vtf+ dvp++G Y+l++rY+n+t+++ ++ +++++++ +ev+fp t++w+tw++ QNK40542.1|CBM35|GH66 797 EAESSILSGVSTNTDHPGYTGTGFVDSYGTMYSSVTFDLDVPTTGYYNLKFRYSNATAAECKRLLIMDNASEGEVDFPVTADWNTWQE 884 8*************************************************************************************** PP CBM35.hmm 90 aagtvtLkaGkntitiks...dwGwinldslel 119 ++++v+ + G + + + +G+inld++e+ QNK40542.1|CBM35|GH66 885 SEKQVSMRSGMHRLVLLVssgYEGYINLDHIEI 917 ************99988878999********86 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (919 residues searched) Target model(s): 2 (268 nodes) Passed MSV filter: 1 (0.5); expected 0.0 (0.02) Passed bias filter: 1 (0.5); expected 0.0 (0.02) Passed Vit filter: 1 (0.5); expected 0.0 (0.001) Passed Fwd filter: 1 (0.5); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 106.17 // Query: AUS97989.1|CBM35|GH15 [L=1049] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-39 122.2 5.7 8.2e-39 119.7 5.7 2.5 1 CBM35.hmm Domain annotation for each model (and alignments): >> CBM35.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 119.7 5.7 4.1e-39 8.2e-39 1 118 [. 49 169 .. 49 170 .. 0.98 Alignments for each domain: == domain 1 score: 119.7 bits; conditional E-value: 4.1e-39 CBM35.hmm 1 yeAedasltgvsvntnhagysGsgfvdglqaagdavtfnvdvpkaGsYelslrYangtgstktlsvvvnGtkvsevtfpstgnwdtwg 88 yeAe+a+l++v+vntnh+gy+G+gfvdg+ + gd+v+fn++v ++G+Y+l+lrY+n+tg+++++sv v+G k+s++ fp +g+wd+w+ AUS97989.1|CBM35|GH15 49 YEAETATLNNVTVNTNHPGYTGTGFVDGYGEIGDYVQFNITVATEGDYTLRLRYSNNTGNYNKRSVLVDGVKISNAYFPDNGSWDSWS 136 9*************************************************************************************** PP CBM35.hmm 89 taagtvtLkaGkntitiks...dwGwinldsle 118 t+++ tL+aG++t+++ + G+inld+l AUS97989.1|CBM35|GH15 137 TTDVGTTLSAGTHTVRVLVessSDGFINLDNLV 169 ****************9888999*******995 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1049 residues searched) Target model(s): 2 (268 nodes) Passed MSV filter: 1 (0.5); expected 0.0 (0.02) Passed bias filter: 1 (0.5); expected 0.0 (0.02) Passed Vit filter: 1 (0.5); expected 0.0 (0.001) Passed Fwd filter: 1 (0.5); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 307.68 // Query: QNF26751.1|CBM35|CE8|PL10_1 [L=1116] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.7e-33 100.3 2.1 2.3e-32 98.9 0.9 2.4 2 CBM35.hmm Domain annotation for each model (and alignments): >> CBM35.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 98.9 0.9 1.2e-32 2.3e-32 1 119 [] 47 170 .. 47 170 .. 0.96 2 ? -1.5 0.0 0.15 0.3 43 88 .. 820 869 .. 801 878 .. 0.69 Alignments for each domain: == domain 1 score: 98.9 bits; conditional E-value: 1.2e-32 CBM35.hmm 1 yeAedasltgvsvntnhagysGsgfvdglq.aagdavtfn.vdvpkaGsYelslrYangtgstktlsvvvnGtkvs.evtfp 79 yeAeda +t + ++++h+gy+G+gfvd+ a+g+++t++ dvp +G+Y+l++rYang ++++ ++ vn++ v+ e+ f+ QNF26751.1|CBM35|CE8|PL10_1 47 YEAEDAVITDAIIDSQHPGYTGTGFVDYKPnAPGGTITWTaSDVPLTGEYTLEFRYANGAAENRPAEIKVNDQVVEaELAFD 128 9**************************875389*******99*********************************99***** PP CBM35.hmm 80 stgnwdtwgtaagtvtLkaGkntitiks..dwGwinldslel 119 stg+w+tw+t+ +++tL+aG+n i + +G n+d+l++ QNF26751.1|CBM35|CE8|PL10_1 129 STGEWTTWKTVITKATLQAGENVIVATGkgASGGANIDHLRI 170 ************************99998999******9975 PP == domain 2 score: -1.5 bits; conditional E-value: 0.15 CBM35.hmm 43 pkaGsYelslrYang..tgstktlsvvv.nGtkvsevtfpstgnwdtw.g 88 + +G+Y+ + +t+ +++++ nG +++ v++p+++ + t+ g QNF26751.1|CBM35|CE8|PL10_1 820 DGSGDYQTVQEAIDAvpANNTEPVEIFIhNGVYKEVVKIPANKPFITLiG 869 55566655555444443567888899998999999999999988888654 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1116 residues searched) Target model(s): 2 (268 nodes) Passed MSV filter: 1 (0.5); expected 0.0 (0.02) Passed bias filter: 1 (0.5); expected 0.0 (0.02) Passed Vit filter: 1 (0.5); expected 0.0 (0.001) Passed Fwd filter: 1 (0.5); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 309.16 // [ok]