# hmmscan :: search sequence(s) against a profile database # HMMER 3.3.2 (Nov 2020); http://hmmer.org/ # Copyright (C) 2020 Howard Hughes Medical Institute. # Freely distributed under the BSD open source license. # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: /array2/siva/dbcansub_update/cazy2025/match_results/dbsub_data_2025/merged_clusters/CBM35/fasta_for_each_cluster/cluster_101.txt # target HMM database: merged_hmms/CBM35.hmm # per-dom hits tabular output: hmmscan_out/domain_result/CBM35/CBM35_cluster_101.out.dm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 647657|Ricme1_GeneCatalog_proteins_20130412.aa.fasta|GH43_25|GH43_25|CBM35 [L=451] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-06 16.1 0.7 2.3e-06 15.1 0.1 1.9 2 CBM35.hmm Domain annotation for each model (and alignments): >> CBM35.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.9 0.1 0.2 0.4 55 87 .. 240 271 .. 211 281 .. 0.70 2 ! 15.1 0.1 1.1e-06 2.3e-06 1 96 [. 318 412 .. 318 438 .. 0.83 Alignments for each domain: == domain 1 score: -1.9 bits; conditional E-value: 0.2 CBM35.hmm 55 angtgstktlsvvvnGtkvsevtfpstgnwdtw 87 n s++t +++ G+++ ++ f +wd+ 647657|Ricme1_GeneCatalog_proteins_20130412.aa.fasta|GH43_25|GH43_25|CBM35 240 TNTYNSQSTFVLTIAGSSQTTYMFMGD-AWDSK 271 554556667778888888888888776.57664 PP == domain 2 score: 15.1 bits; conditional E-value: 1.1e-06 CBM35.hmm 1 yeAedasltgvsvntnhagysGsgfvdglqaagdavtfn. 39 yeAeda + g ++ t+ + + v ++ +++++vtf+ 647657|Ricme1_GeneCatalog_proteins_20130412.aa.fasta|GH43_25|GH43_25|CBM35 318 YEAEDAAIAGRAAVTDCEHCITKRSVHQI-DPSSNVTFTd 356 9*********99**************999.89999***99 PP CBM35.hmm 40 vdvpkaGsY.elslrYangtgstktlsvvvnGtkvsevtf 78 v+ +G+ +sl+Y ++++ v vnG+k ++ 647657|Ricme1_GeneCatalog_proteins_20130412.aa.fasta|GH43_25|GH43_25|CBM35 357 VQGLGTGERqWMSLHYTVNNATGGDAFVHVNGEKFRVRDL 396 **9988886269*****99999999********9987777 PP CBM35.hmm 79 pstgnwdtwgtaagtvtL 96 + + t+ ++v L 647657|Ricme1_GeneCatalog_proteins_20130412.aa.fasta|GH43_25|GH43_25|CBM35 397 NVRAGLHH--TVPISVVL 412 77765555..55555555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (451 residues searched) Target model(s): 2 (268 nodes) Passed MSV filter: 1 (0.5); expected 0.0 (0.02) Passed bias filter: 1 (0.5); expected 0.0 (0.02) Passed Vit filter: 1 (0.5); expected 0.0 (0.001) Passed Fwd filter: 1 (0.5); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 118.14 // Query: 1083493|Mycalb1_GeneCatalog_proteins_20180325.aa.fasta|GH43_25|GH43_25|CBM35 [L=456] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (456 residues searched) Target model(s): 2 (268 nodes) Passed MSV filter: 1 (0.5); expected 0.0 (0.02) Passed bias filter: 0 (0); expected 0.0 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 525.88 // Query: 932169|Hexnit1_GeneCatalog_proteins_20170619.aa.fasta|GH43_25|GH43_25|CBM35 [L=447] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (447 residues searched) Target model(s): 2 (268 nodes) Passed MSV filter: 1 (0.5); expected 0.0 (0.02) Passed bias filter: 1 (0.5); expected 0.0 (0.02) Passed Vit filter: 1 (0.5); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 359.27 // Query: 420069|Exigl1_GeneCatalog_proteins_20130529.aa.fasta|GH43_25|GH43_25|CBM35 [L=339] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.7e-10 28.3 0.7 1.7e-10 28.3 0.7 1.8 2 CBM35.hmm Domain annotation for each model (and alignments): >> CBM35.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.4 0.1 0.29 0.57 59 87 .. 129 156 .. 118 164 .. 0.65 2 ! 28.3 0.7 8.6e-11 1.7e-10 1 107 [. 203 308 .. 203 326 .. 0.89 Alignments for each domain: == domain 1 score: -2.4 bits; conditional E-value: 0.29 CBM35.hmm 59 gstktlsvvvnGtkvsevtfpstgnwdtw 87 s++t +++ G+++ ++ f +wd+ 420069|Exigl1_GeneCatalog_proteins_20130529.aa.fasta|GH43_25|GH43_25|CBM35 129 NSQSTFVLTIPGSSQTTYMFMGD-AWDSK 156 44556667777777777777766.56664 PP == domain 2 score: 28.3 bits; conditional E-value: 8.6e-11 CBM35.hmm 1 yeAedasltgvsvntnhagysGsgfvdglqaagdavtfn. 39 yeAeda++tg ++ t+ + ++ v + ++g++vtf+ 420069|Exigl1_GeneCatalog_proteins_20130529.aa.fasta|GH43_25|GH43_25|CBM35 203 YEAEDAHMTGRATITDCDSCISKRSVHRI-DTGSNVTFTg 241 9*************************999.8999****** PP CBM35.hmm 40 vdvpkaGsY.elslrYangtgstktlsvvvnGtkvsevtf 78 v+ +G+ +sl+Y +++++ v++nG+k ++ 420069|Exigl1_GeneCatalog_proteins_20130529.aa.fasta|GH43_25|GH43_25|CBM35 242 VEGLGTGERqWMSLHYTVNNATAGDAHVYINGEKYRVGDL 281 **9988876269************************9999 PP CBM35.hmm 79 pstgnwdtwgtaagtvtLkaGkntitiks 107 ++ + t+ ++v Lk +ntit++s 420069|Exigl1_GeneCatalog_proteins_20130529.aa.fasta|GH43_25|GH43_25|CBM35 282 NTRAGHYA--TVPISVVLKRYDNTITFTS 308 99965555..8****************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (339 residues searched) Target model(s): 2 (268 nodes) Passed MSV filter: 1 (0.5); expected 0.0 (0.02) Passed bias filter: 1 (0.5); expected 0.0 (0.02) Passed Vit filter: 1 (0.5); expected 0.0 (0.001) Passed Fwd filter: 1 (0.5); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 125.78 // Query: 1921435|Mycgal1_GeneCatalog_proteins_20160823.aa.fasta|GH43_25|GH43_25|CBM35 [L=444] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-07 18.6 0.5 1.8e-07 18.6 0.5 1.8 2 CBM35.hmm Domain annotation for each model (and alignments): >> CBM35.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.8 0.2 0.38 0.76 46 74 .. 234 263 .. 227 282 .. 0.59 2 ! 18.6 0.5 8.8e-08 1.8e-07 1 98 [. 311 407 .. 311 422 .. 0.86 Alignments for each domain: == domain 1 score: -2.8 bits; conditional E-value: 0.38 CBM35.hmm 46 GsYelslrYang.tgstktlsvvvnGtkvs 74 +Y+ + +Y ++ gs++t+ +++ + s 1921435|Mycgal1_GeneCatalog_proteins_20160823.aa.fasta|GH43_25|GH43_25|CBM35 234 NTYNSQSTYVAQvIGSSQTTYIFMGDVWDS 263 456666666666556666666665554444 PP == domain 2 score: 18.6 bits; conditional E-value: 8.8e-08 CBM35.hmm 1 yeAedasltgvsvntnhagysGsgfvdglqaagdavtfn. 39 yeAeda++ g +v t+ + + ++ v + ++g++vtf+ 1921435|Mycgal1_GeneCatalog_proteins_20160823.aa.fasta|GH43_25|GH43_25|CBM35 311 YEAEDAEMAGRAVVTDCSSCVSKRAVHRV-DNGSTVTFAg 349 9*************************988.899******* PP CBM35.hmm 40 vdvpkaGsYe.lslrYangtgstktlsvvvnGtkvsevtf 78 v+ +G+ + + l+Y +++ v+vn++k + ++ 1921435|Mycgal1_GeneCatalog_proteins_20160823.aa.fasta|GH43_25|GH43_25|CBM35 350 VEGLGNGERQwVALHYTVNNAMGGDAYVYVNDEKMNVRDL 389 **998888643999***999**************998888 PP CBM35.hmm 79 pstgnwdtwgtaagtvtLka 98 + + ++ ++v L++ 1921435|Mycgal1_GeneCatalog_proteins_20160823.aa.fasta|GH43_25|GH43_25|CBM35 390 NVRAGLHH--VVPISVVLQK 407 88776666..6666666666 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (444 residues searched) Target model(s): 2 (268 nodes) Passed MSV filter: 1 (0.5); expected 0.0 (0.02) Passed bias filter: 1 (0.5); expected 0.0 (0.02) Passed Vit filter: 1 (0.5); expected 0.0 (0.001) Passed Fwd filter: 1 (0.5); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 161.61 // Query: 943824|Mycrub1_GeneCatalog_proteins_20170201.aa.fasta|GH43_25|GH43_25|CBM35 [L=449] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.1e-07 17.4 5.9 5.4e-07 17.1 0.3 2.4 2 CBM35.hmm Domain annotation for each model (and alignments): >> CBM35.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 2.4 1.1 0.0092 0.018 40 95 .. 233 291 .. 230 294 .. 0.78 2 ! 17.1 0.3 2.7e-07 5.4e-07 1 98 [. 316 412 .. 316 429 .. 0.84 Alignments for each domain: == domain 1 score: 2.4 bits; conditional E-value: 0.0092 CBM35.hmm 40 vdvpkaGsYelslrYang.tgstktlsvvvnGtkvsevtf 78 v +++ +Y+ + +Y ++ tg+++t+ +++ ++ s+ + 943824|Mycrub1_GeneCatalog_proteins_20170201.aa.fasta|GH43_25|GH43_25|CBM35 233 VAPEANNTYNSQSTYVAAvTGTSQTTYIFMGDAWDSTGSA 272 5556788999999999999999999999999999999999 PP CBM35.hmm 79 pstgnwdtw..gtaagtvt 95 s+ w+ + +t+a t+t 943824|Mycrub1_GeneCatalog_proteins_20170201.aa.fasta|GH43_25|GH43_25|CBM35 273 ASNYMWTPLsvSTSAHTAT 291 9998898763345555555 PP == domain 2 score: 17.1 bits; conditional E-value: 2.7e-07 CBM35.hmm 1 yeAedasltgvsvntnhagysGsgfvdglqaagdavtfn. 39 yeAeda + g ++ t+ + + ++ v + ++g++vtf+ 943824|Mycrub1_GeneCatalog_proteins_20170201.aa.fasta|GH43_25|GH43_25|CBM35 316 YEAEDADMAGRAAVTDCSSCVSKRAVHRV-DDGSTVTFTc 354 9*************************888.99*******9 PP CBM35.hmm 40 vdvpkaGsY.elslrYangtgstktlsvvvnGtkvsevtf 78 v+ +G+ + l+Y ++++ v+vn++k + ++ 943824|Mycrub1_GeneCatalog_proteins_20170201.aa.fasta|GH43_25|GH43_25|CBM35 355 VEGLGNGERqWVALHYTVNNATGGDAYVYVNDEKFNVRDL 394 99988887626999***999*************9988777 PP CBM35.hmm 79 pstgnwdtwgtaagtvtLka 98 + + ++ ++v L++ 943824|Mycrub1_GeneCatalog_proteins_20170201.aa.fasta|GH43_25|GH43_25|CBM35 395 NVRAGLHH--VVPISVFLEK 412 77766665..6666666655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (449 residues searched) Target model(s): 2 (268 nodes) Passed MSV filter: 1 (0.5); expected 0.0 (0.02) Passed bias filter: 1 (0.5); expected 0.0 (0.02) Passed Vit filter: 1 (0.5); expected 0.0 (0.001) Passed Fwd filter: 1 (0.5); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 150.11 // Query: 1398429|Mycpol1_GeneCatalog_proteins_20180505.aa.fasta|GH43_25|GH43_25|CBM35 [L=447] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.9e-07 16.7 0.7 6.9e-07 16.7 0.7 2.3 2 CBM35.hmm Domain annotation for each model (and alignments): >> CBM35.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.2 0.7 0.06 0.12 42 90 .. 233 284 .. 229 291 .. 0.71 2 ! 16.7 0.7 3.4e-07 6.9e-07 1 74 [. 314 388 .. 314 417 .. 0.87 Alignments for each domain: == domain 1 score: -0.2 bits; conditional E-value: 0.06 CBM35.hmm 42 vpkaGsYelslrYang.tgstktlsvvvnGtkvsevtfps 80 +++ +Y+ + +Y + g+++t+ v++ ++ s+ + s 1398429|Mycpol1_GeneCatalog_proteins_20180505.aa.fasta|GH43_25|GH43_25|CBM35 233 PEANNTYNSQSTYVAPvVGTSQTTYVFMGDAWDSTGSAAS 272 5677889999999998778888888888888888888888 PP CBM35.hmm 81 tgnwdtw..gta 90 + w+ + +t+ 1398429|Mycpol1_GeneCatalog_proteins_20180505.aa.fasta|GH43_25|GH43_25|CBM35 273 NYMWTPLsvSTS 284 888877633444 PP == domain 2 score: 16.7 bits; conditional E-value: 3.4e-07 CBM35.hmm 1 yeAedasltgvsvntnhagysGsgfvdglqaagdavtfn. 39 yeAeda++tg ++ t + + ++ v + ++g++vtf+ 1398429|Mycpol1_GeneCatalog_proteins_20180505.aa.fasta|GH43_25|GH43_25|CBM35 314 YEAEDAEITGRAAVTACSTCVSKRAVHRV-DHGSTVTFTd 352 9*********999999**********888.999*****99 PP CBM35.hmm 40 vdvpkaGsYe.lslrYangtgstktlsvvvnGtkvs 74 v+ +G+ + + l+Y ++++ ++vn++k + 1398429|Mycpol1_GeneCatalog_proteins_20180505.aa.fasta|GH43_25|GH43_25|CBM35 353 VEGLGNGERQwVALHYTVNNATGGDAYLYVNDEKFN 388 **998888643999**9999************9876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (447 residues searched) Target model(s): 2 (268 nodes) Passed MSV filter: 1 (0.5); expected 0.0 (0.02) Passed bias filter: 1 (0.5); expected 0.0 (0.02) Passed Vit filter: 1 (0.5); expected 0.0 (0.001) Passed Fwd filter: 1 (0.5); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 164.55 // Query: 74996|Rhili1_GeneCatalog_proteins_20150422.aa.fasta|GH43_25|GH43_25|CBM35 [L=411] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.5e-08 20.9 0.6 2.1e-07 18.4 0.1 2.3 2 CBM35.hmm Domain annotation for each model (and alignments): >> CBM35.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.3 0.1 0.063 0.13 53 77 .. 231 255 .. 204 266 .. 0.73 2 ! 18.4 0.1 1.1e-07 2.1e-07 36 114 .. 321 397 .. 314 400 .. 0.84 Alignments for each domain: == domain 1 score: -0.3 bits; conditional E-value: 0.063 CBM35.hmm 53 rYangtgstktlsvvvnGtkvsevt 77 n s++t ++vv+G+++ ++ 74996|Rhili1_GeneCatalog_proteins_20150422.aa.fasta|GH43_25|GH43_25|CBM35 231 ESTNTYNSQNTYDLVVEGSERTTYV 255 5566666788999999999877654 PP == domain 2 score: 18.4 bits; conditional E-value: 1.1e-07 CBM35.hmm 36 vtfnvdvpkaGsYelslrYangtgstktlsvvvnGtkvse 75 vtf+ ++ + +s+ Y ++ ++ ++++nG+++ + 74996|Rhili1_GeneCatalog_proteins_20150422.aa.fasta|GH43_25|GH43_25|CBM35 321 VTFTNVKGTGAMRWVSFYYTVSDPTAGDAQISINGAAAAN 360 6776333566788999****99*****************9 PP CBM35.hmm 76 vtfpst.gnwdtwgtaagtvtLkaGkntitiksdwGwinl 114 ++ ++ + +++ ++ + ++Lk G+n+i+++ +G+ n+ 74996|Rhili1_GeneCatalog_proteins_20150422.aa.fasta|GH43_25|GH43_25|CBM35 361 ISTYNSrAGYSE--VVPVGLKLKRGRNSIEVSC-TGYSNF 397 999888567777..*****************96.888775 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (411 residues searched) Target model(s): 2 (268 nodes) Passed MSV filter: 1 (0.5); expected 0.0 (0.02) Passed bias filter: 1 (0.5); expected 0.0 (0.02) Passed Vit filter: 1 (0.5); expected 0.0 (0.001) Passed Fwd filter: 1 (0.5); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 162.00 // Query: 2841907|Mycoli1_GeneCatalog_proteins_20171218.aa.fasta|GH43_25|GH43_25|CBM35 [L=439] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.7e-07 17.3 1.1 4.7e-07 17.3 1.1 1.8 2 CBM35.hmm Domain annotation for each model (and alignments): >> CBM35.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.3 0.1 0.28 0.56 46 82 .. 238 275 .. 231 287 .. 0.62 2 ! 17.3 1.1 2.3e-07 4.7e-07 1 79 [. 315 394 .. 315 411 .. 0.88 Alignments for each domain: == domain 1 score: -2.3 bits; conditional E-value: 0.28 CBM35.hmm 46 GsYelslrYang.tgstktlsvvvnGtkvsevtfpstg 82 +Y+ + +Y + gs++t+ +++ ++ s+ + s+ 2841907|Mycoli1_GeneCatalog_proteins_20171218.aa.fasta|GH43_25|GH43_25|CBM35 238 NTYNSQSTYVAPvIGSSQTTYIFMGDAWDSTGSAASNY 275 56666666776666666666666666655555555555 PP == domain 2 score: 17.3 bits; conditional E-value: 2.3e-07 CBM35.hmm 1 yeAedasltgvsvntnhagysGsgfvdglqaagdavtfn. 39 yeAeda++ g +v t+ + + ++ v + ++g++vtf+ 2841907|Mycoli1_GeneCatalog_proteins_20171218.aa.fasta|GH43_25|GH43_25|CBM35 315 YEAEDAEMAGRAVVTDCSSCVSKRTVHRV-DDGSTVTFAg 353 9*************************988.99******** PP CBM35.hmm 40 vdvpkaGsYe.lslrYangtgstktlsvvvnGtkvsevtf 78 v+ +G+ + + l+Y ++++ v+vn++k + ++ 2841907|Mycoli1_GeneCatalog_proteins_20171218.aa.fasta|GH43_25|GH43_25|CBM35 354 VEGLGNGERQwVALHYTVNNATGGDAYVYVNDEKMNVRDL 393 **998888643999***999*************9876555 PP CBM35.hmm 79 p 79 + 2841907|Mycoli1_GeneCatalog_proteins_20171218.aa.fasta|GH43_25|GH43_25|CBM35 394 N 394 5 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (439 residues searched) Target model(s): 2 (268 nodes) Passed MSV filter: 1 (0.5); expected 0.0 (0.02) Passed bias filter: 1 (0.5); expected 0.0 (0.02) Passed Vit filter: 1 (0.5); expected 0.0 (0.001) Passed Fwd filter: 1 (0.5); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 170.09 // Query: 1366411|Aurde3_1_GeneCatalog_proteins_20130729.aa.fasta|GH43_25|GH43_25|CBM35 [L=445] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.7e-06 15.4 1.6 2.2e-06 15.1 0.2 2.0 2 CBM35.hmm Domain annotation for each model (and alignments): >> CBM35.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.2 0.1 0.52 1 60 86 .. 239 264 .. 229 272 .. 0.60 2 ! 15.1 0.2 1.1e-06 2.2e-06 1 81 [. 312 393 .. 312 430 .. 0.81 Alignments for each domain: == domain 1 score: -3.2 bits; conditional E-value: 0.52 CBM35.hmm 60 stktlsvvvnGtkvsevtfpstgnwdt 86 s++t +++ G+++ ++ f +wd+ 1366411|Aurde3_1_GeneCatalog_proteins_20130729.aa.fasta|GH43_25|GH43_25|CBM35 239 SQSTFVLTIPGSQQTTYVFMGD-AWDS 264 4455556666666666666555.5655 PP == domain 2 score: 15.1 bits; conditional E-value: 1.1e-06 CBM35.hmm 1 yeAedasltgvsvntnhagysGsgfvdglqaagdavtfnv 40 yeAeda ltg+s+ t+ + ++ v ++++ ++ + ++v 1366411|Aurde3_1_GeneCatalog_proteins_20130729.aa.fasta|GH43_25|GH43_25|CBM35 312 YEAEDAFLTGNSAITDCDHCVSKRSVHQIDNFSNVTFVDV 351 9****************************66655555569 PP CBM35.hmm 41 dvpkaGsY.elslrYangtgstktlsvvvnGtkvsevtfp 79 +G+ +sl+Y +++++ v++nG+k +++ 1366411|Aurde3_1_GeneCatalog_proteins_20130729.aa.fasta|GH43_25|GH43_25|CBM35 352 AGLGNGERqWMSLHYTVNNATAGDAYVSINGEKFRVGDLN 391 8877777526**********************98865555 PP CBM35.hmm 80 st 81 1366411|Aurde3_1_GeneCatalog_proteins_20130729.aa.fasta|GH43_25|GH43_25|CBM35 392 VR 393 55 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (445 residues searched) Target model(s): 2 (268 nodes) Passed MSV filter: 1 (0.5); expected 0.0 (0.02) Passed bias filter: 1 (0.5); expected 0.0 (0.02) Passed Vit filter: 1 (0.5); expected 0.0 (0.001) Passed Fwd filter: 1 (0.5); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 159.99 // Query: 1343352|Mycpol1_GeneCatalog_proteins_20180505.aa.fasta|GH43_25|GH43_25|CBM35 [L=448] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.6e-07 16.8 0.8 6.6e-07 16.8 0.8 2.2 2 CBM35.hmm Domain annotation for each model (and alignments): >> CBM35.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.2 0.7 0.06 0.12 42 90 .. 234 285 .. 230 292 .. 0.71 2 ! 16.8 0.8 3.3e-07 6.6e-07 1 74 [. 315 389 .. 315 419 .. 0.86 Alignments for each domain: == domain 1 score: -0.2 bits; conditional E-value: 0.06 CBM35.hmm 42 vpkaGsYelslrYang.tgstktlsvvvnGtkvsevtfps 80 +++ +Y+ + +Y + g+++t+ v++ ++ s+ + s 1343352|Mycpol1_GeneCatalog_proteins_20180505.aa.fasta|GH43_25|GH43_25|CBM35 234 PEANNTYNSQSTYVAPvVGTSQTTYVFMGDAWDSTGSAAS 273 5677889999999998778888888888888888888888 PP CBM35.hmm 81 tgnwdtw..gta 90 + w+ + +t+ 1343352|Mycpol1_GeneCatalog_proteins_20180505.aa.fasta|GH43_25|GH43_25|CBM35 274 NYMWTPLsvSTS 285 888877633444 PP == domain 2 score: 16.8 bits; conditional E-value: 3.3e-07 CBM35.hmm 1 yeAedasltgvsvntnhagysGsgfvdglqaagdavtfn. 39 yeAeda++tg ++ t + + ++ v + ++g++vtf+ 1343352|Mycpol1_GeneCatalog_proteins_20180505.aa.fasta|GH43_25|GH43_25|CBM35 315 YEAEDAEITGRAAVTACSSCVSKRAVHRV-DHGSTVTFTd 353 9*********999999**********888.999*****99 PP CBM35.hmm 40 vdvpkaGsYe.lslrYangtgstktlsvvvnGtkvs 74 v+ +G+ + + l+Y ++++ ++vn++k + 1343352|Mycpol1_GeneCatalog_proteins_20180505.aa.fasta|GH43_25|GH43_25|CBM35 354 VEGLGNGERQwVALHYTVNNATGGDAYLYVNDEKFN 389 **998888643999***999************9876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (448 residues searched) Target model(s): 2 (268 nodes) Passed MSV filter: 1 (0.5); expected 0.0 (0.02) Passed bias filter: 1 (0.5); expected 0.0 (0.02) Passed Vit filter: 1 (0.5); expected 0.0 (0.001) Passed Fwd filter: 1 (0.5); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 167.55 // Query: 1163162|Mycami1_GeneCatalog_proteins_20171027.aa.fasta|GH43_25|GH43_25|CBM35 [L=438] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-06 15.3 1.1 3.9e-06 14.3 0.0 2.2 2 CBM35.hmm Domain annotation for each model (and alignments): >> CBM35.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.0 0.2 0.21 0.42 77 84 .. 269 276 .. 234 304 .. 0.52 2 ! 14.3 0.0 2e-06 3.9e-06 1 106 [. 314 409 .. 314 425 .. 0.84 Alignments for each domain: == domain 1 score: -2.0 bits; conditional E-value: 0.21 CBM35.hmm 77 tfpstgnw 84 + s+ +w 1163162|Mycami1_GeneCatalog_proteins_20171027.aa.fasta|GH43_25|GH43_25|CBM35 269 SAASNYEW 276 33333333 PP == domain 2 score: 14.3 bits; conditional E-value: 2e-06 CBM35.hmm 1 yeAedasltgvsvntnhagysGsgfvdglqaagdavtfnv 40 yeAeda+l g ++ t+ + ++ v + ++g++vtf+ 1163162|Mycami1_GeneCatalog_proteins_20171027.aa.fasta|GH43_25|GH43_25|CBM35 314 YEAEDAQLAGRAAITDCESCISKRSVHRI-DQGSNVTFTG 352 9**********9**************999.899******5 PP CBM35.hmm 41 dvpkaGsYelslrYangtgstktlsvvvnGtkvsevtfps 80 +++ + l+Y ++ ++ v vnG +++ f++ 1163162|Mycami1_GeneCatalog_proteins_20171027.aa.fasta|GH43_25|GH43_25|CBM35 353 IEGIGEKQWVALHYTVNNRTAGDAHVHVNGREAE--RFHK 390 557899999******9999***********9866..4444 PP CBM35.hmm 81 tgnwdtwgtaagtvtLkaGk.ntitik 106 t +++ ++Lk G+ ntit+ 1163162|Mycami1_GeneCatalog_proteins_20171027.aa.fasta|GH43_25|GH43_25|CBM35 391 T--------VVVGIHLKRGSdNTITFA 409 4........778888888854788775 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (438 residues searched) Target model(s): 2 (268 nodes) Passed MSV filter: 1 (0.5); expected 0.0 (0.02) Passed bias filter: 1 (0.5); expected 0.0 (0.02) Passed Vit filter: 1 (0.5); expected 0.0 (0.001) Passed Fwd filter: 1 (0.5); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 151.53 // [ok]