# hmmscan :: search sequence(s) against a profile database # HMMER 3.3.2 (Nov 2020); http://hmmer.org/ # Copyright (C) 2020 Howard Hughes Medical Institute. # Freely distributed under the BSD open source license. # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: /array2/siva/dbcansub_update/cazy2025/match_results/dbsub_data_2025/merged_clusters/CBM32/fasta_for_each_cluster/cluster_465.txt # target HMM database: merged_hmms/CBM32.hmm # per-dom hits tabular output: hmmscan_out/domain_result/CBM32/CBM32_cluster_465.out.dm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 2853|Colhig2_GeneCatalog_proteins_20170214.aa.fasta|GH65|CBM32 [L=1017] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1017 residues searched) Target model(s): 1 (124 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 297.99 // Query: 299324|Botdo1_1_GeneCatalog_proteins_20150128.aa.fasta|GH65|CBM32 [L=1015] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1015 residues searched) Target model(s): 1 (124 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 420.49 // Query: 587463|Colsu1_GeneCatalog_proteins_20150101.aa.fasta|GH65|CBM32 [L=1086] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-08 21.8 0.0 2.7e-08 20.5 0.0 1.7 1 CBM32.hmm Domain annotation for each model (and alignments): >> CBM32.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.5 0.0 2.7e-08 2.7e-08 13 76 .. 892 959 .. 883 1023 .. 0.77 Alignments for each domain: == domain 1 score: 20.5 bits; conditional E-value: 2.7e-08 CBM32.hmm 13 aaggggaenavDgdpntrWssag....qwltvdLg...kpttvdkv 51 ++g + a +a+Dg +t+W+s++ + l+vdLg +p+ ++++ 587463|Colsu1_GeneCatalog_proteins_20150101.aa.fasta|GH65|CBM32 892 SHG-ELAFAATDGYGGTFWQSNTchltTALVVDLGasqAPRLLKTI 936 234.66889****888*****86667778******43334689999 PP CBM32.hmm 52 vltwaengrikdykvevStDgktWt 76 +l++a + +k++kv++S+ ++++ 587463|Colsu1_GeneCatalog_proteins_20150101.aa.fasta|GH65|CBM32 937 QLDFAM-RPPKHIKVSISNS-SNFE 959 999855.78*********65.4775 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1086 residues searched) Target model(s): 1 (124 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 123.62 // Query: 582560|Colna1_GeneCatalog_proteins_20170406.aa.fasta|GH65|CBM32 [L=1019] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-08 21.5 0.1 1.3e-08 21.5 0.1 2.0 2 CBM32.hmm Domain annotation for each model (and alignments): >> CBM32.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -4.4 0.5 1 1 68 79 .. 37 47 .. 34 56 .. 0.69 2 ! 21.5 0.1 1.3e-08 1.3e-08 14 76 .. 879 945 .. 871 1009 .. 0.73 Alignments for each domain: == domain 1 score: -4.4 bits; conditional E-value: 1 CBM32.hmm 68 vStDgktWttva 79 vS D++tWt ++ 582560|Colna1_GeneCatalog_proteins_20170406.aa.fasta|GH65|CBM32 37 VSWDDNTWT-LK 47 676777999.44 PP == domain 2 score: 21.5 bits; conditional E-value: 1.3e-08 CBM32.hmm 14 aggggaenavDgdpntrWssag....qwltvdLgkpt...tvdkvv 52 +g + a +a+Dg +t+W+s++ ++vdLg+ + ++++++ 582560|Colna1_GeneCatalog_proteins_20170406.aa.fasta|GH65|CBM32 879 HG-ELAFAATDGYGGTFWQSGTcdvtAAVVVDLGTSQmprRLKAIQ 923 33.66889****888*****85557778******864344999999 PP CBM32.hmm 53 ltwaengrikdykvevStDgktWt 76 l++a + +k++kv+vS+ ++++ 582560|Colna1_GeneCatalog_proteins_20170406.aa.fasta|GH65|CBM32 924 LDFAM-RPPKHVKVSVSNS-SDFE 945 99855.78*********65.4664 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1019 residues searched) Target model(s): 1 (124 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 116.55 // Query: 675174|Colca1_GeneCatalog_proteins_20150403.aa.fasta|GH65|CBM32 [L=1035] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1035 residues searched) Target model(s): 1 (124 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 0 (0); expected 0.0 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 776.17 // Query: 563055|Colzo1_GeneCatalog_proteins_20150103.aa.fasta|GH65|CBM32 [L=1025] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1025 residues searched) Target model(s): 1 (124 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 0 (0); expected 0.0 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 828.28 // Query: 300|Diaam1_GeneCatalog_proteins_20150926.aa.fasta|GH65|CBM32 [L=673] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.3e-07 16.7 0.0 7.9e-07 15.8 0.0 1.4 1 CBM32.hmm Domain annotation for each model (and alignments): >> CBM32.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.8 0.0 7.9e-07 7.9e-07 17 77 .. 536 601 .. 528 665 .. 0.67 Alignments for each domain: == domain 1 score: 15.8 bits; conditional E-value: 7.9e-07 CBM32.hmm 17 ggaenavDgdpntrWssag....qwltvdLg...kpttvdkvvltwaen 58 + a +a+Dg t+W+s+ l+vd g +p+ + +++l++a 300|Diaam1_GeneCatalog_proteins_20150926.aa.fasta|GH65|CBM32 536 ELAFAATDGYGATFWQSGAsdatAALVVDVGssqAPRPLGAIRLDFAM- 583 557789***888*****73356778******543457********965. PP CBM32.hmm 59 grikdykvevStDgktWtt 77 + +k+++v+vS+ + +++ 300|Diaam1_GeneCatalog_proteins_20150926.aa.fasta|GH65|CBM32 584 RPPKHVRVSVSNS-SAFEP 601 77*********65.35544 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (673 residues searched) Target model(s): 1 (124 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 104.03 // Query: 9703|Colsub1_GeneCatalog_proteins_20210226.aa.fasta|GH65|CBM32 [L=1027] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.9e-09 21.9 0.0 2.5e-08 20.6 0.0 1.7 1 CBM32.hmm Domain annotation for each model (and alignments): >> CBM32.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.6 0.0 2.5e-08 2.5e-08 13 76 .. 886 953 .. 877 1017 .. 0.77 Alignments for each domain: == domain 1 score: 20.6 bits; conditional E-value: 2.5e-08 CBM32.hmm 13 aaggggaenavDgdpntrWssag....qwltvdLg...kpttvdkvv 52 ++g + a +a+Dg +t+W+s++ + l+vdLg +p+ +++++ 9703|Colsub1_GeneCatalog_proteins_20210226.aa.fasta|GH65|CBM32 886 SHG-ELAFAATDGYGGTFWQSNTchltTALVVDLGasqAPRLLKTIQ 931 234.66889****888*****86667778******433346899999 PP CBM32.hmm 53 ltwaengrikdykvevStDgktWt 76 l++a + +k++kv++S+ ++++ 9703|Colsub1_GeneCatalog_proteins_20210226.aa.fasta|GH65|CBM32 932 LDFAM-RPPKHIKVSISNS-SNFE 953 99855.78*********65.5775 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1027 residues searched) Target model(s): 1 (124 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 125.05 // Query: 193997|Colfa1_GeneCatalog_proteins_20141228.aa.fasta|GH65|CBM32 [L=1016] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-08 21.9 0.0 2.9e-08 20.4 0.0 1.8 1 CBM32.hmm Domain annotation for each model (and alignments): >> CBM32.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.4 0.0 2.9e-08 2.9e-08 12 83 .. 873 948 .. 866 1006 .. 0.62 Alignments for each domain: == domain 1 score: 20.4 bits; conditional E-value: 2.9e-08 CBM32.hmm 12 saaggggaenavDgdpntrWssag....qwltvdLg...kpttvdk 50 s++g + + +a+Dg +t+W+s++ l+vdLg +p+ + + 193997|Colfa1_GeneCatalog_proteins_20141228.aa.fasta|GH65|CBM32 873 SSHG-DLPFAATDGYGGTFWQSGTcdvtAALVVDLGtsqAPQLLEA 917 2234.7799*****888*****85557778******4333468999 PP CBM32.hmm 51 vvltwaengrikdykvevStDgktWttvaekgn 83 ++l++a + +k+ +v++S+ ++++t a ++ 193997|Colfa1_GeneCatalog_proteins_20141228.aa.fasta|GH65|CBM32 918 IQLDFAM-RPPKRARVSISNS-SDFETHAVLAD 948 9999855.77*********65.57777653323 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1016 residues searched) Target model(s): 1 (124 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 128.14 // Query: 614138|Colso1_GeneCatalog_proteins_20141229.aa.fasta|GH65|CBM32 [L=1208] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1208 residues searched) Target model(s): 1 (124 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 0 (0); expected 0.0 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 803.95 // Query: 604482|Colce1_GeneCatalog_proteins_20161230.aa.fasta|GH65|CBM32 [L=858] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.5e-07 15.7 0.0 1.9e-06 14.6 0.0 1.5 1 CBM32.hmm Domain annotation for each model (and alignments): >> CBM32.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.6 0.0 1.9e-06 1.9e-06 14 77 .. 716 783 .. 708 846 .. 0.74 Alignments for each domain: == domain 1 score: 14.6 bits; conditional E-value: 1.9e-06 CBM32.hmm 14 aggggaenavDgdpntrWssag....qwltvdLg..kp.ttvdkvv 52 +g + a +a+Dg +t+W+ + l+vdLg +p + + +v+ 604482|Colce1_GeneCatalog_proteins_20161230.aa.fasta|GH65|CBM32 716 HG-ELAFAATDGYGGTYWQPDAsdvtAALVVDLGfsQPpQLLEAVR 760 33.66889****888*****63356778******8644699***** PP CBM32.hmm 53 ltwaengrikdykvevStDgktWtt 77 l++a + ++++kv++S+ +++++ 604482|Colce1_GeneCatalog_proteins_20161230.aa.fasta|GH65|CBM32 761 LDFAM-RPPRHVKVSISNS-SDFEP 783 **955.77*********65.46654 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (858 residues searched) Target model(s): 1 (124 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 110.96 // [ok]