# hmmscan :: search sequence(s) against a profile database # HMMER 3.3.2 (Nov 2020); http://hmmer.org/ # Copyright (C) 2020 Howard Hughes Medical Institute. # Freely distributed under the BSD open source license. # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: /array2/siva/dbcansub_update/cazy2025/match_results/dbsub_data_2025/merged_clusters/CBM27/fasta_for_each_cluster/unclustered.txt # target HMM database: merged_hmms/CBM27.hmm # per-dom hits tabular output: hmmscan_out/domain_result/CBM27/CBM27_unclustered.out.dm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: ADL53716.1|CBM27|CE20 [L=1235] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-43 135.5 1.1 1e-43 135.5 1.1 1.9 2 CBM27.hmm Domain annotation for each model (and alignments): >> CBM27.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 135.5 1.1 1e-43 1e-43 24 168 .] 71 219 .. 50 219 .. 0.93 2 ? -3.0 0.3 0.37 0.37 150 162 .. 804 816 .. 803 816 .. 0.88 Alignments for each domain: == domain 1 score: 135.5 bits; conditional E-value: 1e-43 CBM27.hmm 24 aepsievkeeggsgaLklnvkldenktWeelkvkv.keekkvdlseykqleydlyipkaekakgklrikva.lndgWkkidkefkidk 109 +e s ++k++g+sgaLk+n+++ ++ktW++++v v ++++d+s+y++l+ydl++++++ ++kl++++a ++++W++ d+ f +++ ADL53716.1|CBM27|CE20 71 VEYSQDLKQDGNSGALKINANF-TGKTWDDASVIVnLGSSAKDFSSYDTLDYDLFVQSDF--TSKLTVATAgMDSSWAWKDDLFVANY 155 5678899***************.************766899*******************..************************** PP CBM27.hmm 110 keknvkslekvkingkeYkkihvtielkd.....ktkkveelvlgivGqnlkykGpiYlDNvrl 168 +v+++ek++ing++Y+kih+t++ ++ ++k++ +++++i++ n++y+GpiYlDN++l ADL53716.1|CBM27|CE20 156 GGIDVTTGEKITINGNDYNKIHITRSKTStldslTDKTFYRFIIKIAAVNTTYCGPIYLDNIAL 219 **************************996666899***************************97 PP == domain 2 score: -3.0 bits; conditional E-value: 0.37 CBM27.hmm 150 ivGqnlkykGpiY 162 + G+ + y+GpiY ADL53716.1|CBM27|CE20 804 VYGKDIVYSGPIY 816 569999******9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1235 residues searched) Target model(s): 1 (168 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 105.34 // Query: BAV13047.1|CBM27|CE20 [L=995] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.9e-45 139.1 1.1 7.9e-45 139.1 1.1 2.1 3 CBM27.hmm Domain annotation for each model (and alignments): >> CBM27.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 139.1 1.1 7.9e-45 7.9e-45 24 168 .] 71 219 .. 41 219 .. 0.91 2 ? -3.8 0.0 0.62 0.62 40 57 .. 309 327 .. 306 336 .. 0.78 3 ? -2.8 0.4 0.31 0.31 153 162 .. 805 814 .. 801 814 .. 0.87 Alignments for each domain: == domain 1 score: 139.1 bits; conditional E-value: 7.9e-45 CBM27.hmm 24 aepsievkeeggsgaLklnvkldenktWeelkvkv.keekkvdlseykqleydlyipkaekakgklrikva.lndgWkkidkefkidk 109 +e s ++k++g++gaLk+n+++ +nktW++++v+v ++ +d+s+y++l+ydl++p+++ + kl+i++a ++++Wk+ d+ f+ d+ BAV13047.1|CBM27|CE20 71 IEYSEDLKMDGNDGALKINANF-TNKTWDDASVMVnLGATGEDFSAYDTLDYDLFVPTNF--DKKLIIGTAgMDSSWKWQDDLFTSDY 155 56788999**************.************866899*******************..9999999999**************** PP CBM27.hmm 110 keknvkslekvkingkeYkkihvtielkd.....ktkkveelvlgivGqnlkykGpiYlDNvrl 168 + +++s+e+++i+gk Y+k+hvt++ ++ ++k+++ ++++i++++++y+GpiYlDN+++ BAV13047.1|CBM27|CE20 156 SGIDLNSGEQTTISGKAYNKLHVTRSKTKafdslSDKTFMAFIIKIATTATTYCGPIYLDNIAI 219 *************************9996666899***************************86 PP == domain 2 score: -3.8 bits; conditional E-value: 0.62 CBM27.hmm 40 kl.nvkldenktWeelkvk 57 k+ + +++++++W+++ v+ BAV13047.1|CBM27|CE20 309 KVkDCSFKQTDQWKDVIVG 327 5558899999999999876 PP == domain 3 score: -2.8 bits; conditional E-value: 0.31 CBM27.hmm 153 qnlkykGpiY 162 qn+ y+GpiY BAV13047.1|CBM27|CE20 805 QNIIYSGPIY 814 899******9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (995 residues searched) Target model(s): 1 (168 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 129.61 // Query: BAL83627.1|CBM27 [L=170] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.7e-08 20.9 0.1 2e-08 20.6 0.1 1.1 1 CBM27.hmm Domain annotation for each model (and alignments): >> CBM27.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.6 0.1 2e-08 2e-08 4 94 .. 42 135 .. 39 168 .. 0.68 Alignments for each domain: == domain 1 score: 20.6 bits; conditional E-value: 2e-08 CBM27.hmm 4 fsseegvkgwqnegtwqaenaepsievkeeggsgaLklnvkl..denktWeelkvkv....keekkvdlseykqleydlyipkaekakgklri 90 +++++++ gw g ++++ + e g g+Lkl+v++ d++++W+e+k++ +++ + +k +++d y++ + kg + BAL83627.1|CBM27 42 WDFSQDIGGWSYLGGYAYSGDAETAFSPEFG--GSLKLDVDFseDKEQSWSEVKLMDmnvnSSSPIQAGNGIKAVSFDFYYDASQ-LKGDAAL 131 7777778888888877777655444333444..5677766661155679*****998877544555555679**********999.5555444 PP CBM27.hmm 91 kval 94 kv l BAL83627.1|CBM27 132 KVKL 135 4433 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (170 residues searched) Target model(s): 1 (168 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 41.93 // Query: AJQ29746.1|CBM27 [L=179] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.2e-27 80.4 0.2 1e-26 80.2 0.2 1.0 1 CBM27.hmm Domain annotation for each model (and alignments): >> CBM27.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 80.2 0.2 1e-26 1e-26 4 168 .] 13 175 .. 11 175 .. 0.91 Alignments for each domain: == domain 1 score: 80.2 bits; conditional E-value: 1e-26 CBM27.hmm 4 fsseegvkgwqnegtwqaenaepsievkeeggsgaLklnvklde..nktWeelkvkv..keekkvdlseykqleydlyipkaekakgklrikv 92 ++++++ gw ++g w+++ p+i+ e+ g+g++kl+v++++ +++W+e+k+++ ++++ l+ ++ l +d y ++ +g +++k+ AJQ29746.1|CBM27 13 WDFSKDAGGWASGGVWNYD-GAPTISYDEKIGDGSIKLDVDFHKkiKESWSEVKLHNsaSDSSPLVLDGCDMLTFDFYFNPNNMTNGPFKAKI 104 778888899*********9.788******************97733689********9999999***************99999********* PP CBM27.hmm 93 alndgWkkidkefkidkkeknvkslekvkingkeYkkihvtielkdktkkveelvlgivGqnlkykGpiYlDNvrl 168 ++++ ++++ + + +++ l ++g + kk++v++ ++ +t++v + +++v ++++ykG iY+DN++l AJQ29746.1|CBM27 105 YMKSD-ANVE----VVNVCPDINVLAASPVEGTNLKKVKVSVPFQAVTANVVYFDFSVVSSYTNYKGEIYVDNIAL 175 ***99.4555....3334457999**************************************************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (179 residues searched) Target model(s): 1 (168 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 40.22 // Query: QGQ94798.1|CBM27|GH5_7 [L=1405] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8e-60 187.9 6.2 6.8e-34 103.5 0.3 3.3 2 CBM27.hmm Domain annotation for each model (and alignments): >> CBM27.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 85.4 1.1 2.5e-28 2.5e-28 3 167 .. 44 209 .. 43 210 .. 0.88 2 ! 103.5 0.3 6.8e-34 6.8e-34 4 167 .. 218 381 .. 217 382 .. 0.88 Alignments for each domain: == domain 1 score: 85.4 bits; conditional E-value: 2.5e-28 CBM27.hmm 3 dfssee.gvkgwqnegtwqaenaepsievkeeggsgaLklnvkldenktWeelkvkv...keekkvdlseykqleydlyipkaekak 85 ++++++ ++ w+++ + + e s ++ +++gaL v++ ++ ++++ +++ +++++vdl++yk++eydl+i ++++ QGQ94798.1|CBM27|GH5_7 44 EYNFNDgTTMSWDKDWGDPLVSLEHSTFMSDGNNTGALAAHVNF-TGGGFDNGNIGGwlgSSQEVVDLTQYKSIEYDLFIHEPDNLL 129 57777755556666666666667777778888999*********.99*********99**99************************* PP CBM27.hmm 86 gklrikvalndgW.kkidkefkidkkeknvkslekvkingkeYkkihvtielkd..ktkkveelvlgivGqnlkykGpiYlDNvr 167 g l++++aln+g ++++ d +e n+ +l+kv+ingk Y kih++++lk+ +++ ++l+++++G ++y+G iY+DNv QGQ94798.1|CBM27|GH5_7 130 GVLKVETALNGGLyEDLN-----DWSEFNLAALNKVTINGKVYGKIHKKVSLKNaiNKALNKKLTIRLAGAGVQYDGIIYVDNVV 209 **********88514455.....77788899**********************9988888899********************97 PP == domain 2 score: 103.5 bits; conditional E-value: 6.8e-34 CBM27.hmm 4 fsseegvkgwqnegtwqaenaepsievkeeggsgaLklnvkldenktWeelkvkv....keekkvdlseykqleydlyipkaekakg 86 +++++g++ + + a ++ + + ++g+L +n ++ ++ +W+e++vk +++ k dls++ ++eyd++ip++++ +g QGQ94798.1|CBM27|GH5_7 218 YDFNDGTAMNWIPAWGDALGTVTNSTNQGNLNEGRLMVNTAF-SSGGWKEANVKTilsgNSAVKTDLSNFGKIEYDVLIPNPTGFTG 303 5666666666666555555555566678899***********.999***********9988999*********************** PP CBM27.hmm 87 klrikvalndgWkkidkefkidkkeknvkslekvkingkeYkkihvtielkd..ktkkveelvlgivGqnlkykGpiYlDNvr 167 l++++a+nd+W +i ++ + d v++ +v+ing +Y+kih+ +l+ ++++v+elv++++ +n++y+GpiYlDN++ QGQ94798.1|CBM27|GH5_7 304 LLKVAAAFNDPWGDISSFETYD-----VTNQATVEINGITYAKIHMVNSLTAiaNKSAVGELVIRLASDNSSYTGPIYLDNIT 381 ***************9555555.....77788*******************888999*************************8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1405 residues searched) Target model(s): 1 (168 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 148.75 // Query: ADL53287.1|CBM27|CE20 [L=995] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.9e-45 139.1 1.1 7.9e-45 139.1 1.1 2.1 3 CBM27.hmm Domain annotation for each model (and alignments): >> CBM27.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 139.1 1.1 7.9e-45 7.9e-45 24 168 .] 71 219 .. 41 219 .. 0.91 2 ? -3.8 0.0 0.62 0.62 40 57 .. 309 327 .. 306 336 .. 0.78 3 ? -2.8 0.4 0.31 0.31 153 162 .. 805 814 .. 801 814 .. 0.87 Alignments for each domain: == domain 1 score: 139.1 bits; conditional E-value: 7.9e-45 CBM27.hmm 24 aepsievkeeggsgaLklnvkldenktWeelkvkv.keekkvdlseykqleydlyipkaekakgklrikva.lndgWkkidkefkidk 109 +e s ++k++g++gaLk+n+++ +nktW++++v+v ++ +d+s+y++l+ydl++p+++ + kl+i++a ++++Wk+ d+ f+ d+ ADL53287.1|CBM27|CE20 71 IEYSEDLKMDGNDGALKINANF-TNKTWDDASVMVnLGATGEDFSAYDTLDYDLFVPTNF--DKKLIIGTAgMDSSWKWQDDLFTSDY 155 56788999**************.************866899*******************..9999999999**************** PP CBM27.hmm 110 keknvkslekvkingkeYkkihvtielkd.....ktkkveelvlgivGqnlkykGpiYlDNvrl 168 + +++s+e+++i+gk Y+k+hvt++ ++ ++k+++ ++++i++++++y+GpiYlDN+++ ADL53287.1|CBM27|CE20 156 SGIDLNSGEQTTISGKAYNKLHVTRSKTKafdslSDKTFMAFIIKIATTATTYCGPIYLDNIAI 219 *************************9996666899***************************86 PP == domain 2 score: -3.8 bits; conditional E-value: 0.62 CBM27.hmm 40 kl.nvkldenktWeelkvk 57 k+ + +++++++W+++ v+ ADL53287.1|CBM27|CE20 309 KVkDCSFKQTDQWKDVIVG 327 5558899999999999876 PP == domain 3 score: -2.8 bits; conditional E-value: 0.31 CBM27.hmm 153 qnlkykGpiY 162 qn+ y+GpiY ADL53287.1|CBM27|CE20 805 QNIIYSGPIY 814 899******9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (995 residues searched) Target model(s): 1 (168 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 128.56 // [ok]