# hmmscan :: search sequence(s) against a profile database # HMMER 3.3.2 (Nov 2020); http://hmmer.org/ # Copyright (C) 2020 Howard Hughes Medical Institute. # Freely distributed under the BSD open source license. # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: /array2/siva/dbcansub_update/cazy2025/match_results/dbsub_data_2025/merged_clusters/CBM23/fasta_for_each_cluster/cluster_5.txt # target HMM database: merged_hmms/CBM23.hmm # per-dom hits tabular output: hmmscan_out/domain_result/CBM23/CBM23_cluster_5.out.dm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CBK97477.1|CBM23|GH5_7 [L=1080] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.3e-53 165.5 25.4 2.7e-48 150.7 5.7 4.1 4 CBM23.hmm Domain annotation for each model (and alignments): >> CBM23.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.8 0.2 0.45 0.45 17 57 .. 263 303 .. 260 336 .. 0.75 2 ! 27.8 0.5 1.6e-10 1.6e-10 40 108 .. 554 629 .. 541 631 .. 0.90 3 ! 150.7 5.7 2.7e-48 2.7e-48 2 162 .] 633 790 .. 632 790 .. 0.98 4 ? -0.6 1.1 0.091 0.091 18 65 .. 899 948 .. 888 971 .. 0.54 Alignments for each domain: == domain 1 score: -2.8 bits; conditional E-value: 0.45 CBM23.hmm 17 saysenssgnstlsldkeekseGskalkfkYdlktegyaGv 57 s+y+++ + n +sl +e + ++ + +Y+ ++ ++G CBK97477.1|CBM23|GH5_7 263 SEYVKSIDPNHMVSLGDEGFYNKPYGYYDEYTTSNYAFYGA 303 56888888888888888888888888888888888555554 PP == domain 2 score: 27.8 bits; conditional E-value: 1.6e-10 CBM23.hmm 40 skalkfkYdlktegyaGvtkklsg....aDwsgynklsl....wlkpdg.snnklvlqikeadGedfeveltldgtea 108 k++++ Yd kt++++G+t + ++ +D++++++l + ++k+ + +n +lv+++ ++G+d+e++lt+++t+a CBK97477.1|CBM23|GH5_7 554 YKQVNVGYDKKTSEFRGITVNGKYltagTDYTDNGGLVTfsdsFIKSLSeDNVTLVFDF--YEGADCEFQLTVTDTSA 629 5899****************99999999********99999999***9999********..58*********988865 PP == domain 3 score: 150.7 bits; conditional E-value: 2.7e-48 CBM23.hmm 2 iddFesYtgddaalqsaysenssgn.stlsldkeekseGskalkfkYdlkt.egyaGvtkklsgaDwsgynklslwlkpdgsnnklv 86 id+FesYt dd++l+say++n++gn +t+sl ++ ++ ka+kf+Y++++ +gy+Gv++ ls++++++y+++s+ l +d+s+n+++ CBK97477.1|CBM23|GH5_7 633 IDTFESYT-DDHQLRSAYTPNTNGNnVTVSLVDN---ANGKAMKFEYNVGSpNGYSGVNHALSQRNVAQYKGVSITLAGDNSGNTFT 715 9*******.***********************77...8899********************************************** PP CBM23.hmm 87 lqikeadGedfeveltldgteakevtipfskfaeasweskgngtldlksvkeivlyvnsngsagsgklviddiklv 162 lq+k++++++fe e+++d+ ++k+++ipf++f+ +sw+s ++ tld++++ ++++y++++g+a++g+++idd++++ CBK97477.1|CBM23|GH5_7 716 LQFKDKNDNYFEKEFAVDFYGEKTIKIPFEEFNAPSWQS-SSATLDTTGIVQVAFYAVRRGNADTGAYIIDDVYFY 790 ***************************************.99*******************************986 PP == domain 4 score: -0.6 bits; conditional E-value: 0.091 CBM23.hmm 18 aysenssgnstlsldkeekseGskalkfk.Ydlkt..egyaGvtkklsgaD 65 ++++ ++++s+l+l + k++ +++ +++ Y+ ++ e y+G + + +++D CBK97477.1|CBM23|GH5_7 899 NFTSTNATDSSLTLAWD-KNNKADGYTVEiYKGGKwnEIYSGADASCTAKD 948 34444555544444333.223333333322333334455555555555555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1080 residues searched) Target model(s): 1 (162 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 87.70 // Query: CBL33682.1|CBM23|GH5_7 [L=1173] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.4e-51 159.5 12.2 1.1e-47 148.7 6.5 4.2 5 CBM23.hmm Domain annotation for each model (and alignments): >> CBM23.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.0 0.2 0.5 0.5 17 57 .. 263 303 .. 260 335 .. 0.76 2 ? -0.6 0.1 0.092 0.092 35 100 .. 455 529 .. 433 537 .. 0.69 3 ! 23.5 0.3 3.5e-09 3.5e-09 41 107 .. 555 628 .. 539 631 .. 0.90 4 ! 148.7 6.5 1.1e-47 1.1e-47 2 162 .] 633 790 .. 632 790 .. 0.98 5 ? -2.1 0.2 0.26 0.26 8 39 .. 903 935 .. 894 960 .. 0.63 Alignments for each domain: == domain 1 score: -3.0 bits; conditional E-value: 0.5 CBM23.hmm 17 saysenssgnstlsldkeekseGskalkfkYdlktegyaGv 57 s+y+++ + n +sl +e + ++ + +Y+ ++ ++G CBL33682.1|CBM23|GH5_7 263 SEYVKSIDPNHMVSLGDEGFYNKPYGYYDEYTTSNYAFYGA 303 56888888888888888888888888888888888555554 PP == domain 2 score: -0.6 bits; conditional E-value: 0.092 CBM23.hmm 35 ekseGskalkfkYdlktegyaGvtkklsg....aDws.gynklsl...wlkpdg.snnklvlqikeadGedfeve 100 + +++ l+++ ++k++ +G+t + ++ +D++ ++n++++ +lk +n+ ++l+ + + +f+v+ CBL33682.1|CBM23|GH5_7 455 FDRADNSDLTVTATMKEGAISGITLDGNAltegKDFTiNNNSVTIkasYLKTLElKNHVFTLDCTAGSSPKFTVN 529 445566677777777777778887775556667999989999999999999999999999999975444455554 PP == domain 3 score: 23.5 bits; conditional E-value: 3.5e-09 CBM23.hmm 41 kalkfkYdlktegyaGvtkklsg....aDwsgynklsl....wlkpdg.snnklvlqikeadGedfeveltldgte 107 k +++ Yd kt++++G+t + ++ +D++++++l + ++k+ + n +lv+++ ++G+d+e+ lt+++t+ CBL33682.1|CBM23|GH5_7 555 KKVNVGYDKKTSEFRGITVNGKYltagTDYTDNGGLVTfsdsFIKSLSeGNVTLVFDF--YEGADCEFLLTVTDTS 628 7899***************99999999********99989999***99999*******..58*********98876 PP == domain 4 score: 148.7 bits; conditional E-value: 1.1e-47 CBM23.hmm 2 iddFesYtgddaalqsaysenssgn.stlsldkeekseGskalkfkYdlkt.egyaGvtkklsgaDwsgynklslwlkpdgsnnklv 86 id+FesYt dd++l+say++n+sgn +t+sl ++ ++ ka+kf+Y++++ +gy Gv++kls++++++y+++s+ l++d+s+n+++ CBL33682.1|CBM23|GH5_7 633 IDTFESYT-DDSQLSSAYTPNTSGNnVTVSLVDN---ANGKAMKFEYNVGSpNGYCGVNRKLSQRNVAQYKGVSINLTGDNSGNSFT 715 9*******.***********************77...8899********************************************** PP CBM23.hmm 87 lqikeadGedfeveltldgteakevtipfskfaeasweskgngtldlksvkeivlyvnsngsagsgklviddiklv 162 lq+k++++++fe e+t++++++k+++ipf++fa +sw+s g+ tld++s+ + ++y+++ g++++g+++idd++++ CBL33682.1|CBM23|GH5_7 716 LQLKDKNDNYFEKEITVNFSGEKTIEIPFEEFAAPSWQS-GSATLDTTSIVQASFYAGNGGNTDTGTYIIDDVYFY 790 ***************************************.*********************************986 PP == domain 5 score: -2.1 bits; conditional E-value: 0.26 CBM23.hmm 8 Ytgddaalqsaysenssgn.stlsldkeekseG 39 ++ d+ + a+++ns+++ t+ + k k + CBL33682.1|CBM23|GH5_7 903 TNATDSSITLAWNKNSKADgYTVEIYKGGKWNE 935 344555566666666666655555555544444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1173 residues searched) Target model(s): 1 (162 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 104.09 // Query: ADL52789.1|CBM23|GH5_7 [L=1398] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.3e-58 181.8 1.3 7.3e-58 181.8 1.3 2.9 3 CBM23.hmm Domain annotation for each model (and alignments): >> CBM23.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -4.2 0.0 1 1 36 50 .. 588 602 .. 573 605 .. 0.70 2 ? -0.4 0.2 0.081 0.081 39 103 .. 707 773 .. 686 778 .. 0.70 3 ! 181.8 1.3 7.3e-58 7.3e-58 1 162 [] 1170 1333 .. 1170 1333 .. 0.99 Alignments for each domain: == domain 1 score: -4.2 bits; conditional E-value: 1 CBM23.hmm 36 kseGskalkfkYdlk 50 ++G++al+f+++ + ADL52789.1|CBM23|GH5_7 588 LENGTTALTFDFNQG 602 468888888888765 PP == domain 2 score: -0.4 bits; conditional E-value: 0.081 CBM23.hmm 39 GskalkfkYdlktegyaGvtkklsgaDws.gynklslwlkpdg.snnklvlqikeadGedfeveltl 103 ++ + f+Y ++++ +G++ ++ +++ +y+++ l+ +g s+++ + ++ +e++++++++ ADL52789.1|CBM23|GH5_7 707 EAEFMLFDYIMDSARRNGIKVIITLENYWeAYGGIDKKLQWEGlSGGSHTARAQFFTNENCKAHYKV 773 4555778999999999999998776554449999988776666665554444443457888888775 PP == domain 3 score: 181.8 bits; conditional E-value: 7.3e-58 CBM23.hmm 1 viddFesYtgddaalqsaysenssgn.stlsldkeekseGskalkfkYdlktegyaGvtkklsgaDwsgynklslwlkpdgsnnk 84 +id+FesY++ + +lq+ay++nssgn ++++l+++ k eGs++++++Y++++++yaG+tk+lsg+ + gy+++++w+ pdgsn+ ADL52789.1|CBM23|GH5_7 1170 IIDNFESYSATNPNLQTAYVKNSSGNvVAVMLESAIKGEGSYSMSYAYTIGSPNYAGITKDLSGKSFVGYKGVAFWISPDGSNRD 1254 59*********************************************************************************** PP CBM23.hmm 85 lvlqikeadGedfeveltldgteakevtipfskfaeasweskgngtldlksvkeivlyvns.ngsagsgklviddiklv 162 +++qike++Ge++e++++l++ a++v+++fskf+++sw+s gng++dl+s++e+++y+++ g++g g+++id+ikl+ ADL52789.1|CBM23|GH5_7 1255 FTIQIKETSGEYWEATYKLSSLVATNVSLEFSKFTHPSWYSGGNGVFDLESITEYSMYIGQgLGTTGGGTIYIDNIKLI 1333 *****************************************************************************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1398 residues searched) Target model(s): 1 (162 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 133.48 // Query: BAV13033.1|CBM23|GH5_7 [L=1398] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.3e-58 181.8 1.3 7.3e-58 181.8 1.3 2.9 3 CBM23.hmm Domain annotation for each model (and alignments): >> CBM23.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -4.2 0.0 1 1 36 50 .. 588 602 .. 573 605 .. 0.70 2 ? -0.4 0.2 0.081 0.081 39 103 .. 707 773 .. 686 778 .. 0.70 3 ! 181.8 1.3 7.3e-58 7.3e-58 1 162 [] 1170 1333 .. 1170 1333 .. 0.99 Alignments for each domain: == domain 1 score: -4.2 bits; conditional E-value: 1 CBM23.hmm 36 kseGskalkfkYdlk 50 ++G++al+f+++ + BAV13033.1|CBM23|GH5_7 588 LENGTTALTFDFNQG 602 468888888888765 PP == domain 2 score: -0.4 bits; conditional E-value: 0.081 CBM23.hmm 39 GskalkfkYdlktegyaGvtkklsgaDws.gynklslwlkpdg.snnklvlqikeadGedfeveltl 103 ++ + f+Y ++++ +G++ ++ +++ +y+++ l+ +g s+++ + ++ +e++++++++ BAV13033.1|CBM23|GH5_7 707 EAEFMLFDYIMDSARRNGIKVIITLENYWeAYGGIDKKLQWEGlSGGSHTARAQFFTNENCKAHYKV 773 4555778999999999999998776554449999988776666665554444443457888888775 PP == domain 3 score: 181.8 bits; conditional E-value: 7.3e-58 CBM23.hmm 1 viddFesYtgddaalqsaysenssgn.stlsldkeekseGskalkfkYdlktegyaGvtkklsgaDwsgynklslwlkpdgsnnk 84 +id+FesY++ + +lq+ay++nssgn ++++l+++ k eGs++++++Y++++++yaG+tk+lsg+ + gy+++++w+ pdgsn+ BAV13033.1|CBM23|GH5_7 1170 IIDNFESYSATNPNLQTAYVKNSSGNvVAVMLESAIKGEGSYSMSYAYTIGSPNYAGITKDLSGKSFVGYKGVAFWISPDGSNRD 1254 59*********************************************************************************** PP CBM23.hmm 85 lvlqikeadGedfeveltldgteakevtipfskfaeasweskgngtldlksvkeivlyvns.ngsagsgklviddiklv 162 +++qike++Ge++e++++l++ a++v+++fskf+++sw+s gng++dl+s++e+++y+++ g++g g+++id+ikl+ BAV13033.1|CBM23|GH5_7 1255 FTIQIKETSGEYWEATYKLSSLVATNVSLEFSKFTHPSWYSGGNGVFDLESITEYSMYIGQgLGTTGGGTIYIDNIKLI 1333 *****************************************************************************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1398 residues searched) Target model(s): 1 (162 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 139.65 // Query: CCO04515.1|CBM23|CBM65|GH5_7 [L=1322] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.7e-45 140.5 0.5 3.7e-45 140.5 0.5 3.6 4 CBM23.hmm Domain annotation for each model (and alignments): >> CBM23.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.8 0.2 0.44 0.44 27 74 .. 458 505 .. 444 539 .. 0.58 2 ? -3.5 0.0 0.72 0.72 64 100 .. 588 627 .. 566 635 .. 0.50 3 ! 140.5 0.5 3.7e-45 3.7e-45 2 161 .. 639 794 .. 638 795 .. 0.97 4 ? -2.5 0.1 0.34 0.34 78 90 .. 876 888 .. 840 908 .. 0.52 Alignments for each domain: == domain 1 score: -2.8 bits; conditional E-value: 0.44 CBM23.hmm 27 stlsldkeekseGskalkfkYdlktegyaGvt...kklsgaDws.gynklsl 74 st s d + ++G+ +++ + ++ +Gv+ kkls++D++ +n++++ CCO04515.1|CBM23|CBM65|GH5_7 458 STYSFDRS--KSGNVVVNVSMKEGS--ISGVEvggKKLSSDDYTiRGNAVTI 505 55555544..555555555544444..4444411156777888888888877 PP == domain 2 score: -3.5 bits; conditional E-value: 0.72 CBM23.hmm 64 aDws.gynklsl...wlkpdg.snnklvlqikeadGedfeve 100 +D++ ++ +++ +lk + +l++++ ++Ged e + CCO04515.1|CBM23|CBM65|GH5_7 588 TDYTtSGDTVTIksaYLKTLSaGIVTLKFDF--YEGEDRELT 627 5555444444444444444443334444444..345544444 PP == domain 3 score: 140.5 bits; conditional E-value: 3.7e-45 CBM23.hmm 2 iddFesYtgddaalqsaysenssgn.stlsldkeekseGskalkfkYdlkt.egyaGvtkklsgaDwsgynklslwlkpdg 80 d+FesY+ +d+al s ys+n++gn ++lsl +++Gskal+f Yd+++ +gy Gv++ + ++ s +++++lw+++dg CCO04515.1|CBM23|CBM65|GH5_7 639 LDTFESYS-NDKALWSSYSRNTGGNeVSLSLA---AKNGSKALAFGYDIGSpNGYCGVNHPIAVRNASSFAGVELWVEGDG 715 59*****9.***************98889998...56******************************************** PP CBM23.hmm 81 snnklvlqikeadGedfeveltldgteakevtipfskfaeasweskgngtldlksvkeivlyvnsngsagsgklviddikl 161 ++n+l++q+ +a++++fe++++ld+++ k+++ipf +f+ +sw+s g ld+++++++++y++ ++ ++g+++id++ + CCO04515.1|CBM23|CBM65|GH5_7 716 TGNSLTVQLRDANDNYFEAQIALDFAGGKTIKIPFADFKAPSWQS--GGNLDTSKLNQFSFYMGGDSARKTGTVYIDNVVF 794 ********************************************9..999****************************976 PP == domain 4 score: -2.5 bits; conditional E-value: 0.34 CBM23.hmm 78 pdgsnnklvlqik 90 +dgs+ +++l +k CCO04515.1|CBM23|CBM65|GH5_7 876 SDGSTDTFALTVK 888 3344444444443 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1322 residues searched) Target model(s): 1 (162 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 119.55 // [ok]