# hmmscan :: search sequence(s) against a profile database # HMMER 3.3.2 (Nov 2020); http://hmmer.org/ # Copyright (C) 2020 Howard Hughes Medical Institute. # Freely distributed under the BSD open source license. # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: /array2/siva/dbcansub_update/cazy2025/match_results/dbsub_data_2025/merged_clusters/CBM21/fasta_for_each_cluster/cluster_49.txt # target HMM database: merged_hmms/CBM21.hmm # per-dom hits tabular output: hmmscan_out/domain_result/CBM21/CBM21_cluster_49.out.dm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 473401|Jimfl_AD_1_GeneCatalog_proteins_20180815.aa.fasta|CBM21|GH13_1|GH13_1 [L=597] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.2e-17 49.8 6.0 4.4e-17 48.8 6.0 1.5 1 CBM21.hmm Domain annotation for each model (and alignments): >> CBM21.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 48.8 6.0 4.4e-17 4.4e-17 4 107 .] 45 143 .. 42 143 .. 0.87 Alignments for each domain: == domain 1 score: 48.8 bits; conditional E-value: 4.4e-17 CBM21.hmm 4 kvvleslslsadkkvlvGtvkVknlafeKkvtvrytldn. 42 +v+l+ ++ +++ v++G++++kn+a+ K vt+ y++ 473401|Jimfl_AD_1_GeneCatalog_proteins_20180815.aa.fasta|CBM21|GH13_1|GH13_1 45 YVQLDYYT--YTNGVFSGQIYIKNVAYSKIVTLYYSTSAg 82 56666666..88999********************96543 PP CBM21.hmm 43 .wktv.seveaeYvksssesaetDrFkfkiklaelkasee 80 w+ ++++a+Y+ +s + +++ + f+ ++++ 473401|Jimfl_AD_1_GeneCatalog_proteins_20180815.aa.fasta|CBM21|GH13_1|GH13_1 83 vWNVAgNSISASYSAAISGT-SYEYWVFSATITSG----- 116 38866267899*****9996.**********9987..... PP CBM21.hmm 81 kklefcirYevngeeywdnnngkNYkv 107 +f+i+Y+v+g++y+dnn+++NYkv 473401|Jimfl_AD_1_GeneCatalog_proteins_20180815.aa.fasta|CBM21|GH13_1|GH13_1 117 GISQFYIKYDVSGNSYYDNNSSNNYKV 143 899**********************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (597 residues searched) Target model(s): 1 (107 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 74.89 // Query: 137640|Jimlac1_GeneCatalog_proteins_20180910.aa.fasta|CBM21|GH13_1|GH13_1 [L=254] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-13 35.6 6.7 1.8e-11 30.8 6.7 2.3 1 CBM21.hmm Domain annotation for each model (and alignments): >> CBM21.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.8 6.7 1.8e-11 1.8e-11 19 107 .] 62 165 .. 43 165 .. 0.72 Alignments for each domain: == domain 1 score: 30.8 bits; conditional E-value: 1.8e-11 CBM21.hmm 19 lvGtvkVknlafeKkvtvrytldn..wk..tvseveaeYv 54 + + ++kn+a+ K vt+ y++ w+ v +v +++ 137640|Jimlac1_GeneCatalog_proteins_20180910.aa.fasta|CBM21|GH13_1|GH13_1 62 IHSHSQIKNVAYSKVVTLYYSTSAgvWNvaGVWNVAGVWN 101 56677899**********9996532244113444444443 PP CBM21.hmm 55 ksssesa..................etDrFkfkiklaelk 76 +++ + f+ ++++ 137640|Jimlac1_GeneCatalog_proteins_20180910.aa.fasta|CBM21|GH13_1|GH13_1 102 VADV--WsvagnsisasysaaisgtSYEYWVFRATITSG- 138 2222..122455566677777777799999999999886. PP CBM21.hmm 77 aseekklefcirYevngeeywdnnngkNYkv 107 +f+i+Y+v+g++y+dnn+++NYkv 137640|Jimlac1_GeneCatalog_proteins_20180910.aa.fasta|CBM21|GH13_1|GH13_1 139 ----GISQFYIKYDVSGSSYYDNNSSNNYKV 165 ....899**********************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (254 residues searched) Target model(s): 1 (107 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 17.39 // Query: 471924|Jimfl_AD_1_GeneCatalog_proteins_20180815.aa.fasta|CBM21|GH13_1|GH13_1 [L=667] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-16 47.1 3.5 3.5e-16 45.9 3.5 1.7 1 CBM21.hmm Domain annotation for each model (and alignments): >> CBM21.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 45.9 3.5 3.5e-16 3.5e-16 5 107 .] 75 172 .. 71 172 .. 0.85 Alignments for each domain: == domain 1 score: 45.9 bits; conditional E-value: 3.5e-16 CBM21.hmm 5 vvleslslsadkkvlvGtvkVknlafeKkvtvrytldn.. 42 v+l+ ++ + + vl+G++++kn+a K vt+ y++ 471924|Jimfl_AD_1_GeneCatalog_proteins_20180815.aa.fasta|CBM21|GH13_1|GH13_1 75 VQLDYYT--YANGVLSGQIYIKNIAPTKVVTIYYSTSAgv 112 5666666..7899*********************965433 PP CBM21.hmm 43 wktv.seveaeYvksssesaetDrFkfkiklaelkaseek 81 w+ + + ++ +Y+ +s + +++ + f+ +++++ 471924|Jimfl_AD_1_GeneCatalog_proteins_20180815.aa.fasta|CBM21|GH13_1|GH13_1 113 WNVTgNRISVSYSAPISGT-SYEYWVFSTTITTE-----G 146 88551667889***99996.*********99986.....8 PP CBM21.hmm 82 klefcirYevngeeywdnnngkNYkv 107 +f+i+Y+v+g++y+dnn+++NY+v 471924|Jimfl_AD_1_GeneCatalog_proteins_20180815.aa.fasta|CBM21|GH13_1|GH13_1 147 ISQFYIKYDVSGTSYYDNNSSNNYEV 172 89**********************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (667 residues searched) Target model(s): 1 (107 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 108.20 // Query: 346437|Gaesem1_GeneCatalog_proteins_20161012.aa.fasta|CBM21|GH13_1|GH13_1 [L=580] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.3e-18 51.5 3.8 1.4e-17 50.5 3.8 1.5 1 CBM21.hmm Domain annotation for each model (and alignments): >> CBM21.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 50.5 3.8 1.4e-17 1.4e-17 5 107 .] 35 132 .. 32 132 .. 0.86 Alignments for each domain: == domain 1 score: 50.5 bits; conditional E-value: 1.4e-17 CBM21.hmm 5 vvleslslsadkkvlvGtvkVknlafeKkvtvrytldn.. 42 v+++s+ + + l+G v+V+n+a+eKk+++ y++ + 346437|Gaesem1_GeneCatalog_proteins_20161012.aa.fasta|CBM21|GH13_1|GH13_1 35 VKVDSFR--YANGRLTGYVYVQNIAYEKKLEIIYSTSSgv 72 5666666..78889********************965444 PP CBM21.hmm 43 wktvseveaeYvksssesaetDrFkfkiklaelkaseekk 82 w++ + + Y s ++++++ ++f+ +++++ 346437|Gaesem1_GeneCatalog_proteins_20161012.aa.fasta|CBM21|GH13_1|GH13_1 73 WNKPENKISAYFYASVPNSNYELWTFSTRINDE-----GI 107 9998887777777777778**********9986.....89 PP CBM21.hmm 83 lefcirYevngeeywdnnngkNYkv 107 +f+++ + ++ ++dnnng+NY v 346437|Gaesem1_GeneCatalog_proteins_20161012.aa.fasta|CBM21|GH13_1|GH13_1 108 AQFYVKLSSGQQAFYDNNNGQNYAV 132 9**********************87 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (580 residues searched) Target model(s): 1 (107 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 90.93 // Query: 147394|Jimfl_GMNB39_1_GeneCatalog_proteins_20180904.aa.fasta|CBM21|GH13_1|GH13_1 [L=601] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.6e-17 48.8 5.6 9.8e-17 47.7 5.6 1.6 1 CBM21.hmm Domain annotation for each model (and alignments): >> CBM21.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 47.7 5.6 9.8e-17 9.8e-17 4 107 .] 45 143 .. 42 143 .. 0.87 Alignments for each domain: == domain 1 score: 47.7 bits; conditional E-value: 9.8e-17 CBM21.hmm 4 kvvleslslsadkkvlvGtvkVknlafeKkvtvrytldn. 42 +v+l+ ++ +++ v++G++++kn+a+ K vt+ y++ 147394|Jimfl_GMNB39_1_GeneCatalog_proteins_20180904.aa.fasta|CBM21|GH13_1|GH13_1 45 YVQLDYYT--YTNGVFSGQIYIKNVAYSKIVTLYYSTSAg 82 56666666..88999********************96543 PP CBM21.hmm 43 .wktv.seveaeYvksssesaetDrFkfkiklaelkasee 80 w+ +++ a+Y+ +s + +++ + f+ ++++ 147394|Jimfl_GMNB39_1_GeneCatalog_proteins_20180904.aa.fasta|CBM21|GH13_1|GH13_1 83 vWNVAgNSILASYSAAISGT-SYEYWVFSATITSG----- 116 38866256889******996.**********9987..... PP CBM21.hmm 81 kklefcirYevngeeywdnnngkNYkv 107 +f+i+Y+v+g++y+dnn+++NYkv 147394|Jimfl_GMNB39_1_GeneCatalog_proteins_20180904.aa.fasta|CBM21|GH13_1|GH13_1 117 GISQFYIKYDVSGNSYYDNNSSNNYKV 143 899**********************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (601 residues searched) Target model(s): 1 (107 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 97.90 // [ok]