# hmmscan :: search sequence(s) against a profile database # HMMER 3.3.2 (Nov 2020); http://hmmer.org/ # Copyright (C) 2020 Howard Hughes Medical Institute. # Freely distributed under the BSD open source license. # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: /array2/siva/dbcansub_update/cazy2025/match_results/dbsub_data_2025/merged_clusters/CBM21/fasta_for_each_cluster/cluster_26.txt # target HMM database: merged_hmms/CBM21.hmm # per-dom hits tabular output: hmmscan_out/domain_result/CBM21/CBM21_cluster_26.out.dm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CCE86375.1|CBM21 [L=617] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-30 91.9 3.2 1.8e-30 91.9 3.2 1.7 2 CBM21.hmm Domain annotation for each model (and alignments): >> CBM21.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 91.9 3.2 1.8e-30 1.8e-30 3 106 .. 270 371 .. 268 372 .. 0.92 2 ? -4.0 0.0 1 1 74 92 .. 425 443 .. 410 447 .. 0.63 Alignments for each domain: == domain 1 score: 91.9 bits; conditional E-value: 1.8e-30 CBM21.hmm 3 skvvleslslsadkkvlvGtvkVknlafeKkvtvrytldnwktvsevea.eYvksssesaetDrFkfkiklaelkaseekklefcirYevnge 94 +++++s+s sa+ ++++G ++Vknla+eKk+++++t+dnwk++ ++ +Y+ks s+ ++D+Fkf i+l+++ + +++f+++Y+v+g CCE86375.1|CBM21 270 APCYVSSVSASAEPNSITGYIMVKNLAYEKKLSIKITFDNWKSHYVYNNvQYHKSFSS-LDYDQFKFVIPLTDK--PPTVQVQFVVKYDVSGI 359 56889999999*******************************9987776489998888.5************97..9**************** PP CBM21.hmm 95 eywdnnngkNYk 106 +ywdnn++kNY+ CCE86375.1|CBM21 360 SYWDNNDSKNYR 371 ***********8 PP == domain 2 score: -4.0 bits; conditional E-value: 1 CBM21.hmm 74 elkaseekklefcirYevn 92 ++++++++k +f rY++n CCE86375.1|CBM21 425 KKFTNSKSKSDFHSRYDIN 443 3335566666666666654 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (617 residues searched) Target model(s): 1 (107 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 76.05 // Query: CCE85277.1|CBM21 [L=623] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-30 92.6 3.9 1.1e-30 92.6 3.9 1.8 2 CBM21.hmm Domain annotation for each model (and alignments): >> CBM21.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 92.6 3.9 1.1e-30 1.1e-30 3 106 .. 275 376 .. 273 377 .. 0.92 2 ? -3.0 0.1 0.55 0.55 62 92 .. 420 448 .. 408 453 .. 0.60 Alignments for each domain: == domain 1 score: 92.6 bits; conditional E-value: 1.1e-30 CBM21.hmm 3 skvvleslslsadkkvlvGtvkVknlafeKkvtvrytldnwktvsevea.eYvksssesaetDrFkfkiklaelkaseekklefcirYevnge 94 +++++s+s sa+ ++++G ++Vknla+eKk+++++t+dnwk++ ++ +Y+ks s+ ++D+Fkf i+l+++ + +++f+++Y+vng CCE85277.1|CBM21 275 APCYVSSVSASAEPNSITGYIMVKNLAYEKKLSIKITFDNWKSHYVYNNvQYHKSFSS-LDYDQFKFVIPLTDK--PPTVQVQFVVKYDVNGV 364 56889999999*******************************9987776489998888.5************97..9**************** PP CBM21.hmm 95 eywdnnngkNYk 106 +ywdnn++kNY+ CCE85277.1|CBM21 365 SYWDNNDSKNYR 376 ***********8 PP == domain 2 score: -3.0 bits; conditional E-value: 0.55 CBM21.hmm 62 etDrFkfkiklaelkaseekklefcirYevn 92 +tD+ +++++ +++++++k +f rY++n CCE85277.1|CBM21 420 NTDERSYRLSK--KFTNSKSKSDFHSRYDIN 448 45554444443..335677777777777765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (623 residues searched) Target model(s): 1 (107 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 95.86 // Query: CCE41113.1|CBM21 [L=659] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-25 75.7 4.6 2e-25 75.7 4.6 2.0 2 CBM21.hmm Domain annotation for each model (and alignments): >> CBM21.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 75.7 4.6 2e-25 2e-25 11 106 .. 346 443 .. 336 444 .. 0.90 2 ? -1.9 0.0 0.27 0.27 54 76 .. 499 521 .. 463 530 .. 0.69 Alignments for each domain: == domain 1 score: 75.7 bits; conditional E-value: 2e-25 CBM21.hmm 11 sls..adkkvlvGtvkVknlafeKkvtvrytldnwktvsevea..eYvksssesaetDrFkfkiklaelkaseekklefcirYevngeeywdn 99 l ++k++l G ++V n+af K++++++t+dnw++ v +Y+ks+++ + D+Fkf ++l++ ++ +ek++e+c++Y++ng++yw n CCE41113.1|CBM21 346 YLLkvNNKTYLCGWLNVVNMAFAKEINLKLTIDNWASSIIVAGitKYQKSINS--SLDQFKFMLDLESFNIVDEKTIELCLEYNTNGQTYWGN 436 444447999****************************999987779****999..7************************************* PP CBM21.hmm 100 nngkNYk 106 n ++NYk CCE41113.1|CBM21 437 NVNQNYK 443 ******8 PP == domain 2 score: -1.9 bits; conditional E-value: 0.27 CBM21.hmm 54 vksssesaetDrFkfkiklaelk 76 ++s+ + + D+F+f+ +l++ CCE41113.1|CBM21 499 KSSLALNFTNDEFSFRPSLKKSY 521 33333333789999998888764 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (659 residues searched) Target model(s): 1 (107 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 95.22 // Query: CCG25220.1|CBM21 [L=610] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.6e-26 78.5 1.8 2.6e-26 78.5 1.8 2.3 2 CBM21.hmm Domain annotation for each model (and alignments): >> CBM21.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 78.5 1.8 2.6e-26 2.6e-26 5 106 .. 318 421 .. 314 422 .. 0.89 2 ? -0.7 0.1 0.11 0.11 55 77 .. 473 497 .. 450 527 .. 0.57 Alignments for each domain: == domain 1 score: 78.5 bits; conditional E-value: 2.6e-26 CBM21.hmm 5 vvleslsls..adkkvlvGtvkVknlafeKkvtvrytldnwktvsevea..eYvksssesaetDrFkfkiklaelkaseekklefcirYevng 93 +++ s+ l ++k++l G ++V n+af K++++++t+dnw++ v +Y+ks+ + + D+Fkf ++l++ ++ +ek++e+c++Y++ng CCG25220.1|CBM21 318 IWMTSAYLLkvNSKTYLCGWLNVVNIAFTKEINLKLTIDNWESSIIVGGiaKYQKSLGS--TLDQFKFMLDLESFNIVDEKTIELCLEYNTNG 408 555555554457999****************************9998754499998888..8******************************* PP CBM21.hmm 94 eeywdnnngkNYk 106 ++yw nn ++NYk CCG25220.1|CBM21 409 QTYWGNNMQQNYK 421 ************8 PP == domain 2 score: -0.7 bits; conditional E-value: 0.11 CBM21.hmm 55 ksssesaetDrFkfkiklaelk..a 77 +s+ + + D+F+f+ +l++ + CCG25220.1|CBM21 473 SSLALNFTNDEFSFRPSLKKSYsaS 497 3333333789999999988876431 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (610 residues searched) Target model(s): 1 (107 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 103.03 // Query: CAX40554.1|CBM21 [L=573] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.2e-32 96.0 2.4 1.9e-31 95.0 2.4 1.6 1 CBM21.hmm Domain annotation for each model (and alignments): >> CBM21.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 95.0 2.4 1.9e-31 1.9e-31 5 106 .. 272 379 .. 268 380 .. 0.86 Alignments for each domain: == domain 1 score: 95.0 bits; conditional E-value: 1.9e-31 CBM21.hmm 5 vvleslsls..adkkvlvGtvkVknlafeKkvtvrytldnwktvsevea....eYvksssesaetDrFkfkiklaelk..aseekklefcirY 89 v+l s+ + + k+ l G+v+V+nlafeKkv +++tl+nwkt + + +Y ks+s+ ++D+Fkfki+l++l+ ++ +l++ci+Y CAX40554.1|CBM21 272 VWLPSAYVLktDGKTFLYGLVNVQNLAFEKKVFLKLTLNNWKTSVIFGGqaviNYFKSISD--KIDQFKFKISLDDLIssDGKNVQLQMCIKY 362 5565555444467899***************************99887777889*******..7*************944445678999**** PP CBM21.hmm 90 evngeeywdnnngkNYk 106 +vng+eywdnn gkNY+ CAX40554.1|CBM21 363 QVNGTEYWDNNFGKNYQ 379 ****************8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (573 residues searched) Target model(s): 1 (107 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 94.90 // Query: BAE44595.1|CBM21 [L=671] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.2e-31 93.4 3.3 1.4e-30 92.2 3.3 1.6 1 CBM21.hmm Domain annotation for each model (and alignments): >> CBM21.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 92.2 3.3 1.4e-30 1.4e-30 5 106 .. 324 431 .. 320 432 .. 0.86 Alignments for each domain: == domain 1 score: 92.2 bits; conditional E-value: 1.4e-30 CBM21.hmm 5 vvleslsls..adkkvlvGtvkVknlafeKkvtvrytldnwktvsevea....eYvksssesaetDrFkfkiklaelk..aseekklefcirY 89 v+l s+ + + k+ l G+v+V+nlafeKkv +++tl+nwkt + + +Y ks+++ ++D+Fkfki+l++l+ ++ +l++ci+Y BAE44595.1|CBM21 324 VWLPSAYVLktDGKTFLYGLVNVQNLAFEKKVFLKLTLNNWKTSVIFGGqsviNYFKSIDN--KIDQFKFKISLDDLIssDGKNVQLQMCIKY 414 5555555444467899****************************9998888889*****99..8*************944445678999**** PP CBM21.hmm 90 evngeeywdnnngkNYk 106 +vn++eywdnn gkNY+ BAE44595.1|CBM21 415 QVNDTEYWDNNFGKNYQ 431 ****************8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (671 residues searched) Target model(s): 1 (107 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 114.43 // Query: AOW30442.1|CBM21 [L=671] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.2e-31 93.4 3.3 1.4e-30 92.2 3.3 1.6 1 CBM21.hmm Domain annotation for each model (and alignments): >> CBM21.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 92.2 3.3 1.4e-30 1.4e-30 5 106 .. 324 431 .. 320 432 .. 0.86 Alignments for each domain: == domain 1 score: 92.2 bits; conditional E-value: 1.4e-30 CBM21.hmm 5 vvleslsls..adkkvlvGtvkVknlafeKkvtvrytldnwktvsevea....eYvksssesaetDrFkfkiklaelk..aseekklefcirY 89 v+l s+ + + k+ l G+v+V+nlafeKkv +++tl+nwkt + + +Y ks+++ ++D+Fkfki+l++l+ ++ +l++ci+Y AOW30442.1|CBM21 324 VWLPSAYVLktDGKTFLYGLVNVQNLAFEKKVFLKLTLNNWKTSVIFGGqsviNYFKSIDN--KIDQFKFKISLDDLIssDGKNVQLQMCIKY 414 5555555444467899****************************9998888889*****99..8*************944445678999**** PP CBM21.hmm 90 evngeeywdnnngkNYk 106 +vn++eywdnn gkNY+ AOW30442.1|CBM21 415 QVNDTEYWDNNFGKNYQ 431 ****************8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (671 residues searched) Target model(s): 1 (107 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 101.56 // [ok]