# hmmscan :: search sequence(s) against a profile database # HMMER 3.3.2 (Nov 2020); http://hmmer.org/ # Copyright (C) 2020 Howard Hughes Medical Institute. # Freely distributed under the BSD open source license. # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: /array2/siva/dbcansub_update/cazy2025/match_results/dbsub_data_2025/merged_clusters/CBM21/fasta_for_each_cluster/cluster_19.txt # target HMM database: merged_hmms/CBM21.hmm # per-dom hits tabular output: hmmscan_out/domain_result/CBM21/CBM21_cluster_19.out.dm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: AUB25227.1|CBM21 [L=947] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-31 95.0 0.1 3.3e-31 94.3 0.1 1.4 1 CBM21.hmm Domain annotation for each model (and alignments): >> CBM21.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 94.3 0.1 3.3e-31 3.3e-31 3 106 .. 378 487 .. 376 488 .. 0.94 Alignments for each domain: == domain 1 score: 94.3 bits; conditional E-value: 3.3e-31 CBM21.hmm 3 skvvleslsls.adkkvlvGtvkVknlafeKkvtvrytldnwktvseveaeYvksssesa....etDrFkfkiklaelk.aseekklefcirY 89 ++v+le+++l+ ++ +l+G+v V+n+af K+v+vr+tld+w+tvse+ ++v ++++s+ +DrF+f+ikl++ k + +e++l +c++Y AUB25227.1|CBM21 378 ENVILERVELQsSTGLTLRGSVIVRNVAFRKWVAVRFTLDQWQTVSEIAGTHVCHIPASTtgdeGWDRFSFSIKLEDYKrKIDERQLVLCVHY 470 789******98677889***************************************99989999*************9867899********* PP CBM21.hmm 90 evngeeywdnnngkNYk 106 +v+++++wd+nng NY+ AUB25227.1|CBM21 471 SVENKDWWDSNNGMNYS 487 ****************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (947 residues searched) Target model(s): 1 (107 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 84.89 // Query: AFR95423.1|CBM21 [L=947] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-31 95.0 0.1 3.3e-31 94.3 0.1 1.4 1 CBM21.hmm Domain annotation for each model (and alignments): >> CBM21.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 94.3 0.1 3.3e-31 3.3e-31 3 106 .. 378 487 .. 376 488 .. 0.94 Alignments for each domain: == domain 1 score: 94.3 bits; conditional E-value: 3.3e-31 CBM21.hmm 3 skvvleslsls.adkkvlvGtvkVknlafeKkvtvrytldnwktvseveaeYvksssesa....etDrFkfkiklaelk.aseekklefcirY 89 ++v+le+++l+ ++ +l+G+v V+n+af K+v+vr+tld+w+tvse+ ++v ++++s+ +DrF+f+ikl++ k + +e++l +c++Y AFR95423.1|CBM21 378 ENVILERVELQsSTGLTLRGSVIVRNVAFRKWVAVRFTLDQWQTVSEIAGTHVCHIPASTtgdeGWDRFSFSIKLEDYKrKIDERQLVLCVHY 470 789******98677889***************************************99989999*************9867899********* PP CBM21.hmm 90 evngeeywdnnngkNYk 106 +v+++++wd+nng NY+ AFR95423.1|CBM21 471 SVENKDWWDSNNGMNYS 487 ****************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (947 residues searched) Target model(s): 1 (107 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 117.88 // Query: KGB78028.3|CBM21 [L=947] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-29 88.8 0.0 2.9e-29 88.0 0.0 1.3 1 CBM21.hmm Domain annotation for each model (and alignments): >> CBM21.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 88.0 0.0 2.9e-29 2.9e-29 3 106 .. 376 485 .. 375 486 .. 0.94 Alignments for each domain: == domain 1 score: 88.0 bits; conditional E-value: 2.9e-29 CBM21.hmm 3 skvvleslsls.adkkvlvGtvkVknlafeKkvtvrytldnwktvseveaeYvksssesa....etDrFkfkiklaelk.aseekklefcirY 89 ++v+le+++l+ +l+G+v V+n+af K+v+vr+tld+w+tvse+ ++v ++++s+ +DrF+f+ikl++ + +e++l +c++Y KGB78028.3|CBM21 376 ENVILERVELQsGAGLTLRGSVIVRNVAFRKWVAVRFTLDQWQTVSEIAGTHVCHIPASTtgdeGWDRFSFSIKLEDYRrKIDERQLILCVHY 468 6899*****98567899***************************************99989999************997678999******** PP CBM21.hmm 90 evngeeywdnnngkNYk 106 +++++++wd+nng NY KGB78028.3|CBM21 469 SIENSDWWDSNNGLNYA 485 ****************6 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (947 residues searched) Target model(s): 1 (107 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 133.59 // Query: AAW43441.2|CBM21 [L=948] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.5e-31 94.2 0.1 6.4e-31 93.3 0.1 1.5 1 CBM21.hmm Domain annotation for each model (and alignments): >> CBM21.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 93.3 0.1 6.4e-31 6.4e-31 3 106 .. 379 488 .. 377 489 .. 0.94 Alignments for each domain: == domain 1 score: 93.3 bits; conditional E-value: 6.4e-31 CBM21.hmm 3 skvvleslsls.adkkvlvGtvkVknlafeKkvtvrytldnwktvseveaeYvksssesa....etDrFkfkiklaelk.aseekklefcirY 89 ++v+le+++l+ ++ +l+G+v V+n+af K+v+vr+tld+w+tvse+ ++v ++++s+ +DrF+f+ikl++ k + +e++l +c++Y AAW43441.2|CBM21 379 ENVILERVELQsSTGLTLRGSVIVRNVAFRKWVAVRFTLDQWQTVSEIAGTHVCHIPASTtgdeGWDRFSFSIKLEDYKrKIDERQLVLCVHY 471 789******98677889***************************************99989999*************9867899********* PP CBM21.hmm 90 evngeeywdnnngkNYk 106 +v+++++wd+n+g NY+ AAW43441.2|CBM21 472 SVENKDWWDSNDGMNYS 488 ****************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (948 residues searched) Target model(s): 1 (107 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 126.78 // Query: ADV22361.1|CBM21 [L=947] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-30 90.3 0.0 1e-29 89.5 0.0 1.4 1 CBM21.hmm Domain annotation for each model (and alignments): >> CBM21.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 89.5 0.0 1e-29 1e-29 3 106 .. 376 485 .. 375 486 .. 0.94 Alignments for each domain: == domain 1 score: 89.5 bits; conditional E-value: 1e-29 CBM21.hmm 3 skvvleslsls.adkkvlvGtvkVknlafeKkvtvrytldnwktvseveaeYvksssesa....etDrFkfkiklaelk.aseekklefcirY 89 ++v+le+++l+ +l+G+v V+n+af K+v+vr+tld+w+tvse+ ++v ++++s+ +DrF+f+ikl++ k + +e++l +c++Y ADV22361.1|CBM21 376 ENVILERVELQsGAGLTLRGSVIVRNVAFRKWVAVRFTLDQWQTVSEIAGTHVCHIPASTtgdeGWDRFSFSIKLEDYKrKIDERQLVLCVHY 468 6899*****98567899***************************************99989999*************9867899********* PP CBM21.hmm 90 evngeeywdnnngkNYk 106 +++++++wd+nng NY+ ADV22361.1|CBM21 469 SIENSDWWDSNNGLNYS 485 ****************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (947 residues searched) Target model(s): 1 (107 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 122.22 // Query: 4330|Cryne_JEC21_1_GeneCatalog_proteins_20120305.aa.fasta|CBM21 [L=1083] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.3e-31 93.9 0.1 7.7e-31 93.1 0.1 1.4 1 CBM21.hmm Domain annotation for each model (and alignments): >> CBM21.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 93.1 0.1 7.7e-31 7.7e-31 3 106 .. 513 622 .. 511 623 .. 0.94 Alignments for each domain: == domain 1 score: 93.1 bits; conditional E-value: 7.7e-31 CBM21.hmm 3 skvvleslsls.adkkvlvGtvkVknlafeKkvtvrytldnwktvs 47 ++v+le+++l+ ++ +l+G+v V+n+af K+v+vr+tld+w+tvs 4330|Cryne_JEC21_1_GeneCatalog_proteins_20120305.aa.fasta|CBM21 513 ENVILERVELQsSTGLTLRGSVIVRNVAFRKWVAVRFTLDQWQTVS 558 789******98677889***************************** PP CBM21.hmm 48 eveaeYvksssesa....etDrFkfkiklaelk.aseekklefcir 88 e+ ++v ++++s+ +DrF+f+ikl++ k + +e++l +c++ 4330|Cryne_JEC21_1_GeneCatalog_proteins_20120305.aa.fasta|CBM21 559 EIAGTHVCHIPASTtgdeGWDRFSFSIKLEDYKrKIDERQLVLCVH 604 **********99989999*************9867899******** PP CBM21.hmm 89 YevngeeywdnnngkNYk 106 Y+v+++++wd+n+g NY+ 4330|Cryne_JEC21_1_GeneCatalog_proteins_20120305.aa.fasta|CBM21 605 YSVENKDWWDSNDGMNYS 622 *****************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1083 residues searched) Target model(s): 1 (107 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 143.64 // Query: UOH82357.1|CBM21 [L=947] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-31 95.1 0.1 3.3e-31 94.3 0.1 1.4 1 CBM21.hmm Domain annotation for each model (and alignments): >> CBM21.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 94.3 0.1 3.3e-31 3.3e-31 3 106 .. 378 487 .. 376 488 .. 0.94 Alignments for each domain: == domain 1 score: 94.3 bits; conditional E-value: 3.3e-31 CBM21.hmm 3 skvvleslsls.adkkvlvGtvkVknlafeKkvtvrytldnwktvseveaeYvksssesa....etDrFkfkiklaelk.aseekklefcirY 89 ++v+le+++l+ ++ +l+G+v V+n+af K+v+vr+tld+w+tvse+ ++v ++++s+ +DrF+f+ikl++ k + +e++l +c++Y UOH82357.1|CBM21 378 ENVILERVELQsSTGLTLRGSVIVRNVAFRKWVAVRFTLDQWQTVSEIAGTHVCHIPASTtgdeGWDRFSFSIKLEDYKrKIDERQLVLCVHY 470 789******98677889***************************************99989999*************9867899********* PP CBM21.hmm 90 evngeeywdnnngkNYk 106 +v+++++wd+nng NY+ UOH82357.1|CBM21 471 SVENKDWWDSNNGMNYS 487 ****************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (947 residues searched) Target model(s): 1 (107 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 145.45 // Query: AAW43441.1|CBM21 [L=948] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.5e-31 94.2 0.1 6.4e-31 93.3 0.1 1.5 1 CBM21.hmm Domain annotation for each model (and alignments): >> CBM21.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 93.3 0.1 6.4e-31 6.4e-31 3 106 .. 379 488 .. 377 489 .. 0.94 Alignments for each domain: == domain 1 score: 93.3 bits; conditional E-value: 6.4e-31 CBM21.hmm 3 skvvleslsls.adkkvlvGtvkVknlafeKkvtvrytldnwktvseveaeYvksssesa....etDrFkfkiklaelk.aseekklefcirY 89 ++v+le+++l+ ++ +l+G+v V+n+af K+v+vr+tld+w+tvse+ ++v ++++s+ +DrF+f+ikl++ k + +e++l +c++Y AAW43441.1|CBM21 379 ENVILERVELQsSTGLTLRGSVIVRNVAFRKWVAVRFTLDQWQTVSEIAGTHVCHIPASTtgdeGWDRFSFSIKLEDYKrKIDERQLVLCVHY 471 789******98677889***************************************99989999*************9867899********* PP CBM21.hmm 90 evngeeywdnnngkNYk 106 +v+++++wd+n+g NY+ AAW43441.1|CBM21 472 SVENKDWWDSNDGMNYS 488 ****************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (948 residues searched) Target model(s): 1 (107 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 133.28 // [ok]