# hmmscan :: search sequence(s) against a profile database # HMMER 3.3.2 (Nov 2020); http://hmmer.org/ # Copyright (C) 2020 Howard Hughes Medical Institute. # Freely distributed under the BSD open source license. # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: /array2/siva/dbcansub_update/cazy2025/match_results/dbsub_data_2025/merged_clusters/CBM18/fasta_for_each_cluster/cluster_42.txt # target HMM database: merged_hmms/CBM18.hmm # per-dom hits tabular output: hmmscan_out/domain_result/CBM18/CBM18_cluster_42.out.dm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SMQ53769.1|CBM18 [L=491] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.8e-07 16.2 23.2 4.8e-07 16.2 23.2 6.5 7 CBM18.hmm Domain annotation for each model (and alignments): >> CBM18.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.3 0.2 0.073 0.073 9 16 .. 50 57 .. 46 59 .. 0.85 2 ? -7.6 5.1 1 1 11 17 .. 106 118 .. 96 123 .. 0.53 3 ! 12.0 21.4 1e-05 1e-05 7 34 .. 178 209 .. 170 217 .. 0.77 4 ! 2.5 1.8 0.0091 0.0091 20 38 .] 244 255 .. 242 255 .. 0.53 5 ! 16.2 23.2 4.8e-07 4.8e-07 2 36 .. 247 284 .. 246 291 .. 0.86 6 ? -3.7 0.2 0.84 0.84 30 35 .. 358 363 .. 357 365 .. 0.79 7 ? -7.0 5.9 1 1 11 17 .. 384 396 .. 371 405 .. 0.61 Alignments for each domain: == domain 1 score: -0.3 bits; conditional E-value: 0.073 CBM18.hmm 9 ntCplnaC 16 tCp+n+C SMQ53769.1|CBM18 50 DTCPGNSC 57 58****99 PP == domain 2 score: -7.6 bits; conditional E-value: 1 CBM18.hmm 11 Cpln......aCC 17 C + +CC SMQ53769.1|CBM18 106 CSNIalidrySCC 118 4333334444666 PP == domain 3 score: 12.0 bits; conditional E-value: 1e-05 CBM18.hmm 7 ggntCpln...aCCskwGyCGttsdYCg.kgC 34 ++ C ++ CCs++G+CG++ ++C ++C SMQ53769.1|CBM18 178 NNYNCVGSeygDCCSQYGFCGSGYEFCAaQNC 209 567784445569***************83567 PP == domain 4 score: 2.5 bits; conditional E-value: 0.0091 CBM18.hmm 20 wGyCGttsdYCgkgCqsnC 38 G YCg++ q nC SMQ53769.1|CBM18 244 NG-------YCGSSNQANC 255 34.......6666666665 PP == domain 5 score: 16.2 bits; conditional E-value: 4.8e-07 CBM18.hmm 2 cgkqaggntCpln...aCCskwGyCGttsdYCgkg.Cqs 36 cg+ ++++ C++ CCs +GyCG++ +YC + Cq SMQ53769.1|CBM18 247 CGS-SNQANCAGTvfgDCCSIYGYCGNGTEYCAPDtCQT 284 885.78899*999999****************9744985 PP == domain 6 score: -3.7 bits; conditional E-value: 0.84 CBM18.hmm 30 CgkgCq 35 C +gC+ SMQ53769.1|CBM18 358 CAQGCI 363 888986 PP == domain 7 score: -7.0 bits; conditional E-value: 1 CBM18.hmm 11 Cpln......aCC 17 C ++ +CC SMQ53769.1|CBM18 384 CSNKplladfSCC 396 5444444455566 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (491 residues searched) Target model(s): 1 (38 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 9.87 // Query: SMR58203.1|CBM18 [L=491] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.8e-07 16.2 23.2 4.8e-07 16.2 23.2 6.5 7 CBM18.hmm Domain annotation for each model (and alignments): >> CBM18.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.3 0.2 0.073 0.073 9 16 .. 50 57 .. 46 59 .. 0.85 2 ? -7.6 5.1 1 1 11 17 .. 106 118 .. 96 123 .. 0.53 3 ! 12.0 21.4 1e-05 1e-05 7 34 .. 178 209 .. 170 217 .. 0.77 4 ! 2.5 1.8 0.0091 0.0091 20 38 .] 244 255 .. 242 255 .. 0.53 5 ! 16.2 23.2 4.8e-07 4.8e-07 2 36 .. 247 284 .. 246 291 .. 0.86 6 ? -3.7 0.2 0.84 0.84 30 35 .. 358 363 .. 357 365 .. 0.79 7 ? -7.0 5.9 1 1 11 17 .. 384 396 .. 371 405 .. 0.61 Alignments for each domain: == domain 1 score: -0.3 bits; conditional E-value: 0.073 CBM18.hmm 9 ntCplnaC 16 tCp+n+C SMR58203.1|CBM18 50 DTCPGNSC 57 58****99 PP == domain 2 score: -7.6 bits; conditional E-value: 1 CBM18.hmm 11 Cpln......aCC 17 C + +CC SMR58203.1|CBM18 106 CSNIalidrySCC 118 4333334444666 PP == domain 3 score: 12.0 bits; conditional E-value: 1e-05 CBM18.hmm 7 ggntCpln...aCCskwGyCGttsdYCg.kgC 34 ++ C ++ CCs++G+CG++ ++C ++C SMR58203.1|CBM18 178 NNYNCVGSeygDCCSQYGFCGSGYEFCAaQNC 209 567784445569***************83567 PP == domain 4 score: 2.5 bits; conditional E-value: 0.0091 CBM18.hmm 20 wGyCGttsdYCgkgCqsnC 38 G YCg++ q nC SMR58203.1|CBM18 244 NG-------YCGSSNQANC 255 34.......6666666665 PP == domain 5 score: 16.2 bits; conditional E-value: 4.8e-07 CBM18.hmm 2 cgkqaggntCpln...aCCskwGyCGttsdYCgkg.Cqs 36 cg+ ++++ C++ CCs +GyCG++ +YC + Cq SMR58203.1|CBM18 247 CGS-SNQANCAGTvfgDCCSIYGYCGNGTEYCAPDtCQT 284 885.78899*999999****************9744985 PP == domain 6 score: -3.7 bits; conditional E-value: 0.84 CBM18.hmm 30 CgkgCq 35 C +gC+ SMR58203.1|CBM18 358 CAQGCI 363 888986 PP == domain 7 score: -7.0 bits; conditional E-value: 1 CBM18.hmm 11 Cpln......aCC 17 C ++ +CC SMR58203.1|CBM18 384 CSNKplladfSCC 396 5444444455566 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (491 residues searched) Target model(s): 1 (38 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 10.79 // Query: SMR61180.1|CBM18 [L=491] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.8e-07 16.2 23.2 4.8e-07 16.2 23.2 6.5 7 CBM18.hmm Domain annotation for each model (and alignments): >> CBM18.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.3 0.2 0.073 0.073 9 16 .. 50 57 .. 46 59 .. 0.85 2 ? -7.6 5.1 1 1 11 17 .. 106 118 .. 96 123 .. 0.53 3 ! 12.0 21.4 1e-05 1e-05 7 34 .. 178 209 .. 170 217 .. 0.77 4 ! 2.5 1.8 0.0091 0.0091 20 38 .] 244 255 .. 242 255 .. 0.53 5 ! 16.2 23.2 4.8e-07 4.8e-07 2 36 .. 247 284 .. 246 291 .. 0.86 6 ? -3.7 0.2 0.84 0.84 30 35 .. 358 363 .. 357 365 .. 0.79 7 ? -7.7 6.6 1 1 11 17 .. 384 396 .. 369 405 .. 0.61 Alignments for each domain: == domain 1 score: -0.3 bits; conditional E-value: 0.073 CBM18.hmm 9 ntCplnaC 16 tCp+n+C SMR61180.1|CBM18 50 DTCPGNSC 57 58****99 PP == domain 2 score: -7.6 bits; conditional E-value: 1 CBM18.hmm 11 Cpln......aCC 17 C + +CC SMR61180.1|CBM18 106 CSNIalidrySCC 118 4333334444666 PP == domain 3 score: 12.0 bits; conditional E-value: 1e-05 CBM18.hmm 7 ggntCpln...aCCskwGyCGttsdYCg.kgC 34 ++ C ++ CCs++G+CG++ ++C ++C SMR61180.1|CBM18 178 NNYNCVGSeygDCCSQYGFCGSGYEFCAaQNC 209 567784445569***************83567 PP == domain 4 score: 2.5 bits; conditional E-value: 0.0091 CBM18.hmm 20 wGyCGttsdYCgkgCqsnC 38 G YCg++ q nC SMR61180.1|CBM18 244 NG-------YCGSSNQANC 255 34.......6666666665 PP == domain 5 score: 16.2 bits; conditional E-value: 4.8e-07 CBM18.hmm 2 cgkqaggntCpln...aCCskwGyCGttsdYCgkg.Cqs 36 cg+ ++++ C++ CCs +GyCG++ +YC + Cq SMR61180.1|CBM18 247 CGS-SNQANCAGTvfgDCCSIYGYCGNGTEYCAPDtCQT 284 885.78899*999999****************9744985 PP == domain 6 score: -3.7 bits; conditional E-value: 0.84 CBM18.hmm 30 CgkgCq 35 C +gC+ SMR61180.1|CBM18 358 CAQGCI 363 888986 PP == domain 7 score: -7.7 bits; conditional E-value: 1 CBM18.hmm 11 Cpln......aCC 17 C ++ +CC SMR61180.1|CBM18 384 CSNKplladfSCC 396 4444444445566 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (491 residues searched) Target model(s): 1 (38 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 11.45 // Query: SMY27403.1|CBM18 [L=491] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.5e-07 15.8 23.4 6.5e-07 15.8 23.4 6.5 7 CBM18.hmm Domain annotation for each model (and alignments): >> CBM18.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.3 0.2 0.073 0.073 9 16 .. 50 57 .. 46 59 .. 0.85 2 ? -7.6 5.1 1 1 11 17 .. 106 118 .. 96 123 .. 0.53 3 ! 12.0 21.4 1e-05 1e-05 7 34 .. 178 209 .. 170 217 .. 0.77 4 ! 2.7 1.8 0.0082 0.0082 20 38 .] 244 255 .. 242 256 .. 0.55 5 ! 15.8 23.4 6.5e-07 6.5e-07 2 36 .. 247 284 .. 246 291 .. 0.86 6 ? -3.7 0.2 0.84 0.84 30 35 .. 358 363 .. 357 365 .. 0.79 7 ? -7.0 5.9 1 1 11 17 .. 384 396 .. 371 405 .. 0.61 Alignments for each domain: == domain 1 score: -0.3 bits; conditional E-value: 0.073 CBM18.hmm 9 ntCplnaC 16 tCp+n+C SMY27403.1|CBM18 50 DTCPGNSC 57 58****99 PP == domain 2 score: -7.6 bits; conditional E-value: 1 CBM18.hmm 11 Cpln......aCC 17 C + +CC SMY27403.1|CBM18 106 CSNIalidrySCC 118 4333334444666 PP == domain 3 score: 12.0 bits; conditional E-value: 1e-05 CBM18.hmm 7 ggntCpln...aCCskwGyCGttsdYCg.kgC 34 ++ C ++ CCs++G+CG++ ++C ++C SMY27403.1|CBM18 178 NNYNCVGSeygDCCSQYGFCGSGYEFCAaQNC 209 567784445569***************83567 PP == domain 4 score: 2.7 bits; conditional E-value: 0.0082 CBM18.hmm 20 wGyCGttsdYCgkgCqsnC 38 G YCg++ q nC SMY27403.1|CBM18 244 NG-------YCGSSNQANC 255 44.......5555555555 PP == domain 5 score: 15.8 bits; conditional E-value: 6.5e-07 CBM18.hmm 2 cgkqaggntCpln...aCCskwGyCGttsdYCg.kgCqs 36 cg+ ++++ C++ CCs +GyCG++ +YC + Cq SMY27403.1|CBM18 247 CGS-SNQANCAGTvfgDCCSIYGYCGNGTEYCAaDTCQT 284 885.78899*999999****************8356985 PP == domain 6 score: -3.7 bits; conditional E-value: 0.84 CBM18.hmm 30 CgkgCq 35 C +gC+ SMY27403.1|CBM18 358 CAQGCI 363 888986 PP == domain 7 score: -7.0 bits; conditional E-value: 1 CBM18.hmm 11 Cpln......aCC 17 C ++ +CC SMY27403.1|CBM18 384 CSNKplladfSCC 396 5444444455566 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (491 residues searched) Target model(s): 1 (38 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 11.27 // Query: AQR58371.1|CBM18 [L=79] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.6e-17 47.6 22.1 1e-16 47.2 22.1 1.2 1 CBM18.hmm Domain annotation for each model (and alignments): >> CBM18.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 47.2 22.1 1e-16 1e-16 1 38 [] 22 61 .. 22 61 .. 0.95 Alignments for each domain: == domain 1 score: 47.2 bits; conditional E-value: 1e-16 CBM18.hmm 1 qcgkqaggntCplnaCCskwGyCGttsdYCg..kgCqsnC 38 +cg+qag+ C++++CCs++G+CG+ts+YC+ +gCqsnC AQR58371.1|CBM18 22 NCGRQAGNRACANQLCCSQYGFCGSTSEYCSraNGCQSNC 61 5*****************************95569***** PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (79 residues searched) Target model(s): 1 (38 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 12.94 // Query: AQR58372.1|CBM18 [L=79] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.2e-17 48.4 22.4 5.8e-17 48.0 22.4 1.2 1 CBM18.hmm Domain annotation for each model (and alignments): >> CBM18.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 48.0 22.4 5.8e-17 5.8e-17 1 38 [] 22 61 .. 22 61 .. 0.95 Alignments for each domain: == domain 1 score: 48.0 bits; conditional E-value: 5.8e-17 CBM18.hmm 1 qcgkqaggntCplnaCCskwGyCGttsdYCg..kgCqsnC 38 +cg+qag+ C++++CCs++G+CG+ts+YC+ +gCqsnC AQR58372.1|CBM18 22 NCGRQAGNRACANGLCCSQYGFCGSTSEYCSraNGCQSNC 61 5*****************************95569***** PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (79 residues searched) Target model(s): 1 (38 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 14.41 // [ok]