# hmmscan :: search sequence(s) against a profile database # HMMER 3.3.2 (Nov 2020); http://hmmer.org/ # Copyright (C) 2020 Howard Hughes Medical Institute. # Freely distributed under the BSD open source license. # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: /array2/siva/dbcansub_update/cazy2025/match_results/dbsub_data_2025/merged_clusters/CBM18/fasta_for_each_cluster/cluster_25.txt # target HMM database: merged_hmms/CBM18.hmm # per-dom hits tabular output: hmmscan_out/domain_result/CBM18/CBM18_cluster_25.out.dm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SMR43622.1|CBM18|GH16_19 [L=441] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.9e-08 19.4 16.6 1e-07 18.4 16.6 1.4 1 CBM18.hmm Domain annotation for each model (and alignments): >> CBM18.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.4 16.6 1e-07 1e-07 2 35 .. 26 56 .. 25 58 .. 0.90 Alignments for each domain: == domain 1 score: 18.4 bits; conditional E-value: 1e-07 CBM18.hmm 2 cgkqaggntCpln.aCCskwGyCGttsdYCgkgCq 35 cg n Cp++ CCs++G+CG+++ YC gC SMR43622.1|CBM18|GH16_19 26 CG---PRNNCPSDaPCCSQYGQCGAGA-YCLGGCD 56 77...4799***99************9.******6 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (441 residues searched) Target model(s): 1 (38 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 36.59 // Query: SMQ45067.1|CBM18|GH16_19 [L=441] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.9e-08 19.2 18.1 1.2e-07 18.1 18.1 1.4 1 CBM18.hmm Domain annotation for each model (and alignments): >> CBM18.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.1 18.1 1.2e-07 1.2e-07 2 35 .. 26 56 .. 25 58 .. 0.91 Alignments for each domain: == domain 1 score: 18.1 bits; conditional E-value: 1.2e-07 CBM18.hmm 2 cgkqaggntCpln.aCCskwGyCGttsdYCgkgCq 35 cg gn Cp++ CCs++G+CG+++ YC gC SMQ45067.1|CBM18|GH16_19 26 CG---PGNNCPSDaPCCSQYGQCGAGA-YCLGGCD 56 77...59*****99************9.******6 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (441 residues searched) Target model(s): 1 (38 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 47.07 // Query: QDS70497.1|CBM18|GH16_19 [L=440] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9e-08 18.6 16.4 1.7e-07 17.7 16.4 1.4 1 CBM18.hmm Domain annotation for each model (and alignments): >> CBM18.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.7 16.4 1.7e-07 1.7e-07 2 35 .. 24 54 .. 23 55 .. 0.91 Alignments for each domain: == domain 1 score: 17.7 bits; conditional E-value: 1.7e-07 CBM18.hmm 2 cgkqaggntCpln.aCCskwGyCGttsdYCgkgCq 35 cg +n+Cp + CCs +G+CG ++ YC gC QDS70497.1|CBM18|GH16_19 24 CG---PNNPCPASaPCCSAYGQCGVGA-YCLGGCD 54 77...59***9999************9.******5 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (440 residues searched) Target model(s): 1 (38 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 55.12 // Query: CDR47725.1|CBM18|GH16_19 [L=629] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (629 residues searched) Target model(s): 1 (38 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 0 (0); expected 0.0 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 153.88 // Query: CAE7031990.1|CBM18|GH16_19 [L=445] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-06 15.2 13.0 2.6e-06 13.9 13.0 1.6 1 CBM18.hmm Domain annotation for each model (and alignments): >> CBM18.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.9 13.0 2.6e-06 2.6e-06 7 35 .. 27 55 .. 21 56 .. 0.88 Alignments for each domain: == domain 1 score: 13.9 bits; conditional E-value: 2.6e-06 CBM18.hmm 7 ggntCpln.aCCskwGyCGttsdYCgkgCq 35 ++n+Cp++ CCs +G CG ++ +C gC CAE7031990.1|CBM18|GH16_19 27 KDNHCPQDtPCCSLYGDCGVGA-FCLGGCD 55 679**9999************9.******5 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (445 residues searched) Target model(s): 1 (38 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 55.95 // Query: QIW99574.1|CBM18|GH16_19 [L=450] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.9e-07 15.6 19.4 7.9e-07 15.6 19.4 2.4 2 CBM18.hmm Domain annotation for each model (and alignments): >> CBM18.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.6 19.4 7.9e-07 7.9e-07 2 35 .. 23 53 .. 22 56 .. 0.91 2 ? 2.0 0.9 0.014 0.014 24 36 .. 336 348 .. 330 350 .. 0.86 Alignments for each domain: == domain 1 score: 15.6 bits; conditional E-value: 7.9e-07 CBM18.hmm 2 cgkqaggntCpln.aCCskwGyCGttsdYCgkgCq 35 cg gg++Cp++ CCs++G+CG ++ YC gC QIW99574.1|CBM18|GH16_19 23 CG---GGSKCPSDsPCCSSYGQCGVGA-YCLGGCD 53 77...89***9999************9.******7 PP == domain 2 score: 2.0 bits; conditional E-value: 0.014 CBM18.hmm 24 GttsdYCgkgCqs 36 G ++ YC gC s QIW99574.1|CBM18|GH16_19 336 GDNPSYCPGGCAS 348 77899******87 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (450 residues searched) Target model(s): 1 (38 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 56.29 // Query: SMR41421.1|CBM18|GH16_19 [L=441] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.9e-08 19.2 18.1 1.2e-07 18.1 18.1 1.4 1 CBM18.hmm Domain annotation for each model (and alignments): >> CBM18.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.1 18.1 1.2e-07 1.2e-07 2 35 .. 26 56 .. 25 58 .. 0.91 Alignments for each domain: == domain 1 score: 18.1 bits; conditional E-value: 1.2e-07 CBM18.hmm 2 cgkqaggntCpln.aCCskwGyCGttsdYCgkgCq 35 cg gn Cp++ CCs++G+CG+++ YC gC SMR41421.1|CBM18|GH16_19 26 CG---PGNNCPSDaPCCSQYGQCGAGA-YCLGGCD 56 77...59*****99************9.******6 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (441 residues searched) Target model(s): 1 (38 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 62.50 // Query: CBX91375.1|CBM18|GH16_19 [L=763] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.7e-06 13.8 12.5 6.8e-06 12.5 12.5 1.6 1 CBM18.hmm Domain annotation for each model (and alignments): >> CBM18.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.5 12.5 6.8e-06 6.8e-06 7 35 .. 341 369 .. 334 370 .. 0.87 Alignments for each domain: == domain 1 score: 12.5 bits; conditional E-value: 6.8e-06 CBM18.hmm 7 ggntCpln.aCCskwGyCGttsdYCgkgCq 35 ++++Cp++ CCs +G CG ++ +C gC CBX91375.1|CBM18|GH16_19 341 KDSHCPQDtPCCSLYGDCGVGA-FCLGGCD 369 5789*9999************9.******5 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (763 residues searched) Target model(s): 1 (38 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 78.94 // Query: EGX48564.1|CBM18|GH16_19 [L=465] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.2e-08 20.0 16.9 7.7e-08 18.8 16.9 1.5 1 CBM18.hmm Domain annotation for each model (and alignments): >> CBM18.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.8 16.9 7.7e-08 7.7e-08 2 35 .. 25 56 .. 24 58 .. 0.89 Alignments for each domain: == domain 1 score: 18.8 bits; conditional E-value: 7.7e-08 CBM18.hmm 2 cgkqaggntCpln.aCCskwGyCGttsdYCgkgCq 35 cg g +Cp+n CCs++G+CG ++ YC gC EGX48564.1|CBM18|GH16_19 25 CGD--GLGKCPSNkPCCSQYGQCGVGA-YCLGGCD 56 774..6699**999************9.******6 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (465 residues searched) Target model(s): 1 (38 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 63.15 // Query: QRC90376.1|CBM18|GH16_19 [L=451] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.5e-07 15.6 12.4 2e-06 14.2 12.4 1.7 1 CBM18.hmm Domain annotation for each model (and alignments): >> CBM18.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.2 12.4 2e-06 2e-06 7 35 .. 26 54 .. 21 55 .. 0.89 Alignments for each domain: == domain 1 score: 14.2 bits; conditional E-value: 2e-06 CBM18.hmm 7 ggntCpln.aCCskwGyCGttsdYCgkgCq 35 ++n+Cp++ CCs +G CG ++ +C gC QRC90376.1|CBM18|GH16_19 26 KDNHCPQDtPCCSLYGDCGVGA-FCLGGCD 54 689**9999************9.******5 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (451 residues searched) Target model(s): 1 (38 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 53.08 // Query: SMY18766.1|CBM18|GH16_19 [L=441] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.9e-08 19.2 18.1 1.2e-07 18.1 18.1 1.4 1 CBM18.hmm Domain annotation for each model (and alignments): >> CBM18.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.1 18.1 1.2e-07 1.2e-07 2 35 .. 26 56 .. 25 58 .. 0.91 Alignments for each domain: == domain 1 score: 18.1 bits; conditional E-value: 1.2e-07 CBM18.hmm 2 cgkqaggntCpln.aCCskwGyCGttsdYCgkgCq 35 cg gn Cp++ CCs++G+CG+++ YC gC SMY18766.1|CBM18|GH16_19 26 CG---PGNNCPSDaPCCSQYGQCGAGA-YCLGGCD 56 77...59*****99************9.******6 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (441 residues searched) Target model(s): 1 (38 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 64.78 // Query: 401308|Glost2_GeneCatalog_proteins_20140303.aa.fasta|GH16_19|GH16_19|CBM18 [L=386] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.4e-08 18.8 16.3 1.4e-07 17.9 16.3 1.4 1 CBM18.hmm Domain annotation for each model (and alignments): >> CBM18.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.9 16.3 1.4e-07 1.4e-07 2 35 .. 26 56 .. 25 57 .. 0.91 Alignments for each domain: == domain 1 score: 17.9 bits; conditional E-value: 1.4e-07 CBM18.hmm 2 cgkqaggntCpln.aCCskwGyCGttsdYCgkgCq 35 cg g+ Cp++ CCs++G+CG ++ YC gC 401308|Glost2_GeneCatalog_proteins_20140303.aa.fasta|GH16_19|GH16_19|CBM18 26 CG---PGKLCPQEaPCCSQYGQCGVGA-YCLGGCD 56 77...599**9999************9.******5 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (386 residues searched) Target model(s): 1 (38 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 59.75 // [ok]