# hmmscan :: search sequence(s) against a profile database # HMMER 3.3.2 (Nov 2020); http://hmmer.org/ # Copyright (C) 2020 Howard Hughes Medical Institute. # Freely distributed under the BSD open source license. # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: /array2/siva/dbcansub_update/cazy2025/match_results/dbsub_data_2025/merged_clusters/CBM16/fasta_for_each_cluster/cluster_17.txt # target HMM database: merged_hmms/CBM16.hmm # per-dom hits tabular output: hmmscan_out/domain_result/CBM16/CBM16_cluster_17.out.dm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: QTN32972.1|CBM16 [L=1185] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-20 59.9 0.1 4.9e-20 58.6 0.1 1.7 1 CBM16.hmm Domain annotation for each model (and alignments): >> CBM16.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 58.6 0.1 4.9e-20 4.9e-20 1 106 [. 853 969 .. 853 976 .. 0.91 Alignments for each domain: == domain 1 score: 58.6 bits; conditional E-value: 4.9e-20 CBM16.hmm 1 nllkNggFEegslsgWst.....sgsaevtvvssdvhsGskalkitssegadagcsqtvtlkpnteYtlsawvktsag.....ylgvkgvgtt 83 nll N+gF +g +gW+ + v++++++ +++ +l+i+s+ ad g ++v++kpnt Y+l +wv+t++ +++ +v+tt QTN32972.1|CBM16 853 NLLVNPGFSDG-ATGWTLraynvARPDAVEITTTPDGRNGPSLRIKSDIRADVGAGADVKVKPNTRYRLGGWVRTEGLknhggRGAMLNVHTT 944 89*********.********999888889***********************************************97788888888888877 PP CBM16.hmm 84 dvstwtt..etswtqlevtfttgas 106 + +t+ t+wt+l++ f++g+ QTN32972.1|CBM16 945 EGNTKAIsgDTEWTELSTEFSSGNR 969 77777767999************85 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1185 residues searched) Target model(s): 1 (116 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 94.05 // Query: QOV88701.1|CBM16 [L=1422] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.8e-23 69.0 0.7 6.1e-23 67.9 0.7 1.6 1 CBM16.hmm Domain annotation for each model (and alignments): >> CBM16.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 67.9 0.7 6.1e-23 6.1e-23 1 113 [. 867 992 .. 867 994 .. 0.88 Alignments for each domain: == domain 1 score: 67.9 bits; conditional E-value: 6.1e-23 CBM16.hmm 1 nllkNggFEeg...slsgWst...sgsaevtvvssdvhsGskalkitssegadagcsqtvtlkpnteYtlsawvktsag......ylgvkgv. 80 nl+ N++FEe+ ++ gW sg+a+ + ++++++G+ ++ + s++g+d++++ +v+++p +Y+lsaw+kt+++ ++++ +v QOV88701.1|CBM16 867 NLIPNASFEETaggKPRGWRArhySGEATQELSTTVARTGKNSVVLRSDKGSDTSWYVDVKVEPRAKYRLSAWIKTENVkavrggMGALLNVh 959 899*******999***********9999999999********************************************988877766666665 PP CBM16.hmm 81 gttdvstwtt.etswtqlevtfttgastdsaavq 113 g+ +++ + +++wt++e+tf++g+ d++ ++ QOV88701.1|CBM16 960 GSDFKTKPVAgNSDWTKVEITFDSGSR-DTVSIN 992 44445555559**************85.777765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1422 residues searched) Target model(s): 1 (116 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 145.22 // Query: QUE52074.1|CBM16 [L=1202] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.9e-15 42.0 0.0 1.7e-14 40.7 0.0 1.7 1 CBM16.hmm Domain annotation for each model (and alignments): >> CBM16.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 40.7 0.0 1.7e-14 1.7e-14 2 108 .. 866 987 .. 865 993 .. 0.86 Alignments for each domain: == domain 1 score: 40.7 bits; conditional E-value: 1.7e-14 CBM16.hmm 2 llkNggFEeg....slsgWst.....sgsaevtvvssdvhsGskalkitssegadagcsqtvtlkpnteYtlsawvktsag....ylgvkgv. 80 ll Ng+FEe gW sg++ +t + + +kalk+ts+e d+++ tv+l+p+ Y+l+a +kt+ + +++++ QUE52074.1|CBM16 866 LLPNGSFEEAagdlPSGGWRAfqwvpSGTPRFTSAIVPEGRTGKALKLTSKEPTDSSVGITVKLEPERRYRLTAFIKTDLKteggRGAIINLh 958 899******99997445677777777****9999999999999***********************************998888899999996 PP CBM16.hmm 81 gttdvstwtt.etswtqlevtfttgastd 108 g++++++ ++ + +wt +++ ft++++ d QUE52074.1|CBM16 959 GSQSSTKPIEgTCDWTPVSFEFTSPKDGD 987 6666666677999************9744 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1202 residues searched) Target model(s): 1 (116 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 141.66 // Query: QNN20905.1|CBM16 [L=1137] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-19 56.5 0.0 4.6e-19 55.4 0.0 1.6 1 CBM16.hmm Domain annotation for each model (and alignments): >> CBM16.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 55.4 0.0 4.6e-19 4.6e-19 1 105 [. 859 974 .. 859 982 .. 0.84 Alignments for each domain: == domain 1 score: 55.4 bits; conditional E-value: 4.6e-19 CBM16.hmm 1 nllkNggFEeg...slsgWst...sgsaevtvvssdvhsGskalkitssegadagcsqtvtlkpnteYtlsawvktsag...ylgvkgv...g 81 nl+ N++FEe ++ W++ +g a+ ++ +++++G+++lki+ss g+d+++ +v+++p+ Y+ls+wvkt+++ +g+ +v + QNN20905.1|CBM16 859 NLMPNASFEEIqngQPVAWKVrnyNGPAD-HAIVEAGRTGDHCLKISSSVGSDTSWFVDVPVTPGALYRLSGWVKTDSVkgaRGGLFNVhglK 950 8999*****97777********9888887.77799*******************************************999977777775324 PP CBM16.hmm 82 ttdvstwtt.etswtqlevtfttga 105 + +++ + +++wt+++ f+ + QNN20905.1|CBM16 951 DGVTDAI-SgSQDWTRVQREFRNDS 974 3344444.3699*****99998765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1137 residues searched) Target model(s): 1 (116 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 143.73 // [ok]