# hmmscan :: search sequence(s) against a profile database # HMMER 3.3.2 (Nov 2020); http://hmmer.org/ # Copyright (C) 2020 Howard Hughes Medical Institute. # Freely distributed under the BSD open source license. # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: /array2/siva/dbcansub_update/cazy2025/match_results/dbsub_data_2025/merged_clusters/CBM13/fasta_for_each_cluster/cluster_98.txt # target HMM database: merged_hmms/CBM13.hmm # per-dom hits tabular output: hmmscan_out/domain_result/CBM13/CBM13_cluster_98.out.dm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: XNM39701.1|CBM13 [L=170] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-15 43.8 1.4 2.5e-15 43.4 1.4 1.1 1 CBM13.hmm Domain annotation for each model (and alignments): >> CBM13.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 43.4 1.4 2.5e-15 2.5e-15 15 137 .. 51 157 .. 43 168 .. 0.78 Alignments for each domain: == domain 1 score: 43.4 bits; conditional E-value: 2.5e-15 CBM13.hmm 15 gkclggstaaganvqlwdccnganQqWtltsdgtirlenhqsgkcLdvaasstaagaevqqytcngganQqWrlesvgsgyykirnras.gkc 106 g c+ +a++++++++c + + Qq++ + +g+++le + cL + +e+++ c +++ qW+++ + ++ n + ++c XNM39701.1|CBM13 51 GFCV--ALNAQDQLITQPCEKITRQQFNWD-AGALQLEHR----CLVA-----KGVSELVLAEC-QDDSRQWQWQAD-----RLLN-HKvDRC 124 6677..236667899999766455999999.555776555....**73.....46679******.666688999888.....899*.8879** PP CBM13.hmm 107 Ldvkgg..adgtpvqqwdcngganQqWsvlksd 137 Ldv+g gtp+ + +c gganQ + ++ s+ XNM39701.1|CBM13 125 LDVAGRrhKPGTPLRLAECYGGANQSFEWKSSA 157 ****889666***************99887665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (170 residues searched) Target model(s): 1 (188 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 27.46 // Query: WCH27318.1|CBM13 [L=170] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.6e-15 42.9 2.1 4.8e-15 42.5 2.1 1.1 1 CBM13.hmm Domain annotation for each model (and alignments): >> CBM13.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 42.5 2.1 4.8e-15 4.8e-15 15 137 .. 51 157 .. 44 168 .. 0.77 Alignments for each domain: == domain 1 score: 42.5 bits; conditional E-value: 4.8e-15 CBM13.hmm 15 gkclggstaaganvqlwdccnganQqWtltsdgtirlenhqsgkcLdvaasstaagaevqqytcngganQqWrlesvgsgyykirnras.gkc 106 g c+ ++++++++++c + + Qq++ + +g+++le + cL + +e+++ c +++ qW+++ + ++ n + ++c WCH27318.1|CBM13 51 GFCV--ALNTQDQLITQPCEKITRQQFNWD-AGALQLEHR----CLVA-----KGVSELVLAEC-QDDSRQWQWQAD-----RLLN-HKvDRC 124 6677..224555799999766455999999.555776555....**73.....46679******.666688999888.....899*.8879** PP CBM13.hmm 107 Ldvkgg..adgtpvqqwdcngganQqWsvlksd 137 Ldv+g gtp+ + +c gganQ + ++ s+ WCH27318.1|CBM13 125 LDVAGRrhKPGTPLRLAECYGGANQSFEWKSSA 157 ****889666***************99887665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (170 residues searched) Target model(s): 1 (188 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 39.31 // [ok]