# hmmscan :: search sequence(s) against a profile database # HMMER 3.3.2 (Nov 2020); http://hmmer.org/ # Copyright (C) 2020 Howard Hughes Medical Institute. # Freely distributed under the BSD open source license. # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: /array2/siva/dbcansub_update/cazy2025/match_results/dbsub_data_2025/merged_clusters/CBM13/fasta_for_each_cluster/cluster_721.txt # target HMM database: merged_hmms/CBM13.hmm # per-dom hits tabular output: hmmscan_out/domain_result/CBM13/CBM13_cluster_721.out.dm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 3295|Gansi1_GeneCatalog_proteins_20210227.aa.fasta|CBM13|CBM13 [L=547] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-14 40.9 0.0 1.4e-08 21.3 0.0 2.7 2 CBM13.hmm Domain annotation for each model (and alignments): >> CBM13.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.3 0.0 1.4e-08 1.4e-08 11 133 .. 245 369 .. 233 385 .. 0.75 2 ! 16.4 0.1 4.5e-07 4.5e-07 6 110 .. 404 510 .. 399 545 .. 0.65 Alignments for each domain: == domain 1 score: 21.3 bits; conditional E-value: 1.4e-08 CBM13.hmm 11 nvnsgkclggstaaganvqlwdccnganQqWtltsdg......tirl 51 +v++ ++++ s+ ++++++ ++ ++g nQqW++ + g +r 3295|Gansi1_GeneCatalog_proteins_20210227.aa.fasta|CBM13|CBM13 245 SVETVMVMDLSGGDNTSLIGYPMHGGPNQQWEFIPSGlgyiirCVRP 291 44445555888899999999**998899**********655544444 PP CBM13.hmm 52 enhqsgkcLdva.asstaagaevqqytcngganQqWrlesvgsgyyk 97 n + + L+v+ ++ ga++++ + W +e+++ ++ 3295|Gansi1_GeneCatalog_proteins_20210227.aa.fasta|CBM13|CBM13 292 SNEGNTLYLTVDcGGV-REGAPIVANGY----PVAWSVEETE--QGI 331 4444568999997665.78999987776....355***8884..677 PP CBM13.hmm 98 irnr.asgkcLdvkggadgtpvqqwdc.ngganQqWsv 133 i++ +s+ + +++ +a gt++q+ + +g+ Q W++ 3295|Gansi1_GeneCatalog_proteins_20210227.aa.fasta|CBM13|CBM13 332 IISWpNSKYVFELSDKAAGTKIQLMPLvHGKLCQVWRL 369 888835599*****6699*****999526688899965 PP == domain 2 score: 16.4 bits; conditional E-value: 4.5e-07 CBM13.hmm 6 tyrlvnvnsgkclggstaagan.vqlwdccnganQqWtltsdg.... 47 + lvn+n g ++ s+a++++ ++ ++ ++g +QqW+l + g 3295|Gansi1_GeneCatalog_proteins_20210227.aa.fasta|CBM13|CBM13 404 YHVLVNANCGTAIDVSGADSTGiITGYPAHGGESQQWELIPSGlghi 450 56789999999999999999987888887666779999999999654 PP CBM13.hmm 48 .tirlenhq.s....gkcLdvaasstaagaevqqytcngganQqWrl 88 + ++ s + L+v++ + a+v++ t W + 3295|Gansi1_GeneCatalog_proteins_20210227.aa.fasta|CBM13|CBM13 451 iR----CARsSveghALYLSVDGEGVRDSASVVASTH-P---VAWHV 489 42....3322233223677777554457777777774.2...33777 PP CBM13.hmm 89 esvgsgyykirnrasgkcLdvk 110 e+ g+++i +s+ + ++ 3295|Gansi1_GeneCatalog_proteins_20210227.aa.fasta|CBM13|CBM13 490 EQI-EGSVRISWPNSQYVFHLA 510 544.677777666666666666 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (547 residues searched) Target model(s): 1 (188 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 35.36 // Query: 519594|Ganbon1_GeneCatalog_proteins_20210118.aa.fasta|CBM13 [L=394] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-12 34.3 0.3 1e-07 18.6 0.0 2.5 2 CBM13.hmm Domain annotation for each model (and alignments): >> CBM13.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.6 0.0 1e-07 1e-07 7 90 .. 102 195 .. 97 205 .. 0.61 2 ! 13.2 0.0 4.4e-06 4.4e-06 7 77 .. 250 326 .. 243 391 .. 0.61 Alignments for each domain: == domain 1 score: 18.6 bits; conditional E-value: 1e-07 CBM13.hmm 7 yrlvnvnsgkclggstaaganvqlwdccnganQqWtltsdg.tirlenhq 55 y l nv g +++ s++++++++ ++ ++g nQqW++++ g ++++ ++ 519594|Ganbon1_GeneCatalog_proteins_20210118.aa.fasta|CBM13 102 YVLLNVSIGTVMDLSGTDNTSLIGYPMHGGPNQQWEFVPSGlGYMIRCVK 151 56667777777777777777777777776777888888777755555555 PP CBM13.hmm 56 .sgkcLdvaassta.......agaevqqytcngg.anQqWrles 90 s ++ +s+ a a ++vq+ ++ g Q Wrl+ 519594|Ganbon1_GeneCatalog_proteins_20210118.aa.fasta|CBM13 152 aSTNGISWPNSKYAlslsdktACTTVQLMPRIQGeLCQVWRLDA 195 44445565433333333334566677777764444777777754 PP == domain 2 score: 13.2 bits; conditional E-value: 4.4e-06 CBM13.hmm 7 yrlvnvnsgkclggstaaganvqlwdccnganQqWtltsdg.....tirl 51 lvn+n g + + +++a+++ ++ ++g nQqW+l + g + 519594|Ganbon1_GeneCatalog_proteins_20210118.aa.fasta|CBM13 250 HVLVNANCGTAIHMDWDDNAGIIGYEMHGGENQQWQLIPSGlghiiR--- 296 56788888888843446777788888887788999999999864332... PP CBM13.hmm 52 enhq.s....gkcLdva.asstaagaevqqyt 77 ++ s + L+v+ ++ + a++++ t 519594|Ganbon1_GeneCatalog_proteins_20210118.aa.fasta|CBM13 297 -CARsSveghALYLSVDdGGV-RDSASIVAST 326 .33222221235666664433.4555555555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (394 residues searched) Target model(s): 1 (188 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 28.75 // Query: 11969|Gansp1_GeneCatalog_proteins_20110326.aa.fasta|CBM13 [L=58] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3e-07 17.0 0.0 3.4e-07 16.8 0.0 1.1 1 CBM13.hmm Domain annotation for each model (and alignments): >> CBM13.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.8 0.0 3.4e-07 3.4e-07 53 95 .. 10 49 .. 3 55 .. 0.63 Alignments for each domain: == domain 1 score: 16.8 bits; conditional E-value: 3.4e-07 CBM13.hmm 53 nhqsgkcLdvaasstaagaevqqytcngganQqWrlesvgsgy 95 n++ g ++d s +++ +++ y+ +gg+nQqW + + gsgy 11969|Gansp1_GeneCatalog_proteins_20110326.aa.fasta|CBM13 10 NARCGAAMDL---SGDDNRSLIGYPMHGGPNQQWDFVPFGSGY 49 4443455664...335777788888878888888887776775 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (58 residues searched) Target model(s): 1 (188 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 25.99 // Query: 3294|Gansi1_GeneCatalog_proteins_20210227.aa.fasta|CBM13 [L=213] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.3e-06 13.6 0.0 7.8e-06 12.4 0.0 1.7 1 CBM13.hmm Domain annotation for each model (and alignments): >> CBM13.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.4 0.0 7.8e-06 7.8e-06 7 59 .. 71 126 .. 66 209 .. 0.77 Alignments for each domain: == domain 1 score: 12.4 bits; conditional E-value: 7.8e-06 CBM13.hmm 7 yrlvnvn.sgkclggstaaganvqlwdccn.ganQqWtltsdg.tirlenhq. 55 + lvn++ g+ l + + ++v+ ++ ++ g+nQqW++++ g + +++ 3294|Gansi1_GeneCatalog_proteins_20210227.aa.fasta|CBM13 71 FVLVNARyPGQALTIDMVDRKTVVGYP-TQfGQNQQWEFVPSGaGFAIRSMLp 122 567777778888855556677777788.5556889999988888677777765 PP CBM13.hmm 56 sgkc 59 +gk 3294|Gansi1_GeneCatalog_proteins_20210227.aa.fasta|CBM13 123 GGKK 126 5442 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (213 residues searched) Target model(s): 1 (188 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 19.47 // Query: 155409|Trave1_GeneCatalog_proteins_20101111.aa.fasta|CBM13 [L=126] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.7e-09 22.9 0.0 4.5e-08 19.7 0.0 1.9 1 CBM13.hmm Domain annotation for each model (and alignments): >> CBM13.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.7 0.0 4.5e-08 4.5e-08 23 134 .. 4 119 .. 1 124 [. 0.60 Alignments for each domain: == domain 1 score: 19.7 bits; conditional E-value: 4.5e-08 CBM13.hmm 23 aaganvqlwdccnganQqWtltsdg...tirlenhq.sg..kcLdvaasst 67 a++++++ ++ ++g nQqW++ + g ir ++++ g + L+ + 155409|Trave1_GeneCatalog_proteins_20101111.aa.fasta|CBM13 4 ADNKTLIGYPMHGGPNQQWEFIPSGhgyVIRCVRRSkEGhpLYLTTEDGL- 53 55556777887777889999998888554443333322312455532222. PP CBM13.hmm 68 aagaevqqytcngganQqWrlesvgsgyykirnrasgkcLdvkgg...adg 115 +a++++ ++ W++e+++ g i +++ + d+++ + g 155409|Trave1_GeneCatalog_proteins_20101111.aa.fasta|CBM13 54 RENAAIVASPY----PVSWNVEHTNEGI-MISWPNTDFVFDLAEWgskTPG 99 25555555555....3459998886443.4433355899999877765558 PP CBM13.hmm 116 tpvqqwd.cngganQqWsvl 134 t++q+ + g + Q W + 155409|Trave1_GeneCatalog_proteins_20101111.aa.fasta|CBM13 100 TKIQLVRlRPGEPCQLWHYT 119 99997775666888888765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (126 residues searched) Target model(s): 1 (188 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 11.80 // Query: 730921|Obbri1_GeneCatalog_proteins_20140615.aa.fasta|CBM13 [L=189] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.9e-13 36.2 0.0 5.5e-13 35.7 0.0 1.3 1 CBM13.hmm Domain annotation for each model (and alignments): >> CBM13.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 35.7 0.0 5.5e-13 5.5e-13 14 143 .. 3 137 .. 1 155 [. 0.78 Alignments for each domain: == domain 1 score: 35.7 bits; conditional E-value: 5.5e-13 CBM13.hmm 14 sgkclggstaaganvqlwdccnganQqWtltsdg.tirlenhq..s..gkc 59 sg l+ +++ ++v+ w+ ++g nQqW++++ g ++++++ s g+ 730921|Obbri1_GeneCatalog_proteins_20140615.aa.fasta|CBM13 3 SGTSLDLAGHDHKSVIGWPTHGGPNQQWEFVPSGqGYIIRSAAatSeyGLY 53 56666556677778*****777999********99777777776558889* PP CBM13.hmm 60 LdvaasstaagaevqqytcngganQqWrlesvg.sgyyki..rnrasgkcL 107 L+v +s ++gae+ + Wr ++++ + + +i n + +cL 730921|Obbri1_GeneCatalog_proteins_20140615.aa.fasta|CBM13 54 LTVKQSI-SDGAELDVCEF----PMSWRAQHDEhNDALRIlwSNTEYALCL 99 **98655.79999988775....577****998766677733443336*** PP CBM13.hmm 108 dvkgg.adgtpvqqwdcng.ganQqWsvlksdlkikli 143 +g+ a gt+ + + + +++Q W++ k + ++ ++ 730921|Obbri1_GeneCatalog_proteins_20140615.aa.fasta|CBM13 100 ADNGNmAPGTKAELRSLTPgDPSQMWRFAKCASTTEDQ 137 ***99**********9877699*****99877665554 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (189 residues searched) Target model(s): 1 (188 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 32.13 // Query: 863490|Crevar1_GeneCatalog_proteins_20151207.aa.fasta|CBM13 [L=143] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.4e-18 52.7 1.5 5.6e-17 48.8 1.4 1.9 1 CBM13.hmm Domain annotation for each model (and alignments): >> CBM13.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 48.8 1.4 5.6e-17 5.6e-17 12 133 .. 15 139 .. 10 142 .. 0.81 Alignments for each domain: == domain 1 score: 48.8 bits; conditional E-value: 5.6e-17 CBM13.hmm 12 vnsgkclggstaaganvqlwdccn.ganQqWtltsdg..tirlenhq.sg 57 +s+ ++ +++++++++ ++ + ganQ Wtl ++ + l+n + ++ 863490|Crevar1_GeneCatalog_proteins_20151207.aa.fasta|CBM13 15 CASKTWIDLNDSDKKSIIGYQ-AGgGANQLWTLIETSegPWALRNCRdTN 63 344444466667777788888.554899*****98877799999**9779 PP CBM13.hmm 58 kcLdvaasstaagaevqqytcngganQqWrlesvg.sgyykirnr.asgk 105 k L +++ a+g+++++ ++ + Q ++l+svg s+yy i ++++ 863490|Crevar1_GeneCatalog_proteins_20151207.aa.fasta|CBM13 64 KYLGFGGKA-ASGTRLIAEDY---GIQLFNLQSVGnSKYYSISVPgHDNL 109 ***965555.8*********8...77********8899****5554889* PP CBM13.hmm 106 cLdvkgg..adgtpvqqwdcngganQqWsv 133 ++d + + +g+p+ +++ +gg+nQqW + 863490|Crevar1_GeneCatalog_proteins_20151207.aa.fasta|CBM13 110 VIDMSASssLNGNPILIYSKHGGPNQQWEL 139 *****777999*****************76 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (143 residues searched) Target model(s): 1 (188 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: 11.92 // Query: QKX06829.1|CBM13 [L=573] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.9e-29 88.1 13.2 9.7e-19 54.5 4.1 2.4 2 CBM13.hmm Domain annotation for each model (and alignments): >> CBM13.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 54.5 4.1 9.7e-19 9.7e-19 7 133 .. 300 439 .. 294 440 .. 0.76 2 ! 47.2 1.7 1.6e-16 1.6e-16 64 145 .. 415 494 .. 412 519 .. 0.81 Alignments for each domain: == domain 1 score: 54.5 bits; conditional E-value: 9.7e-19 CBM13.hmm 7 yrlvnvn.sgkcl......ggstaaga..nvqlwdccn.ganQqWtltsdg.....tirlenhqsgkcLdvaasstaagaevqqytcngganQ 84 ++++n++ ++k + s++ g+ +++l+d + ++ Q+ t+t+++ ++++ +s+k Ld ++ ++g+++ +y +gg+nQ QKX06829.1|CBM13 300 IKINNNTvQSKIApetrtaAISATPGSivELTLEDILGrTTTQTKTITTNSvlpngVYKVTFENSQKSLD--TFGMNNGSNIGLYESHGGPNQ 390 55555555555555544333333555553467777667566699999977777777666666666689**..46778**************** PP CBM13.hmm 85 qWrlesvgsgyykirnrasgkcLdvkggadgtpvqqwdcngganQqWsv 133 qW++++ g++ yki+n +gk +d+ g+++g ++ ++++gg+nQ+W + QKX06829.1|CBM13 391 QWEVINLGNNIYKITNIKNGKSIDAFGQNNGDNIGSYEYHGGPNQKWEI 439 *****999999***************8799*****************75 PP == domain 2 score: 47.2 bits; conditional E-value: 1.6e-16 CBM13.hmm 64 asstaagaevqqytcngganQqWrlesvgsgyykirnrasgkcLdvkggadgtpvqqwdcngganQqWsvlksdlkikliae 145 a+ +++g ++ y ++gg+nQ+W+++ v++g y+++ + s+kc+d+ g ++g+++ +++c+gg+nQ+ +++ +++++ ++ QKX06829.1|CBM13 415 AFGQNNGDNIGSYEYHGGPNQKWEINIVSNGVYQVTDYRSKKCIDAFGTSNGSNIGLYECHGGSNQNIRFTLVSTRKN--SK 494 67778********************9999******************77*****************766655543332..22 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (573 residues searched) Target model(s): 1 (188 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 33.25 // [ok]