# hmmscan :: search sequence(s) against a profile database # HMMER 3.3.2 (Nov 2020); http://hmmer.org/ # Copyright (C) 2020 Howard Hughes Medical Institute. # Freely distributed under the BSD open source license. # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: /array2/siva/dbcansub_update/cazy2025/match_results/dbsub_data_2025/merged_clusters/CBM13/fasta_for_each_cluster/cluster_38.txt # target HMM database: merged_hmms/CBM13.hmm # per-dom hits tabular output: hmmscan_out/domain_result/CBM13/CBM13_cluster_38.out.dm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: AEW67349.1|CBM13 [L=245] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-26 80.2 8.8 8.2e-22 64.5 5.1 2.1 2 CBM13.hmm Domain annotation for each model (and alignments): >> CBM13.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 64.5 5.1 8.2e-22 8.2e-22 49 134 .. 121 203 .. 113 209 .. 0.84 2 ! 17.9 0.2 1.6e-07 1.6e-07 99 133 .. 208 244 .. 202 245 .] 0.72 Alignments for each domain: == domain 1 score: 64.5 bits; conditional E-value: 8.2e-22 CBM13.hmm 49 irlenhqs.gkcLdvaasstaagaevqqytcngganQqWrlesvgsgyykirnrasgkcLdvkgg.adgtpvqqwdcngganQqWsvl 134 + + + ++ +++Ldv ++ ++ga++ ++t ng++nQ+W +e + ++i++++sg+++dvkgg g+p++qw+ +gg+nQqW + AEW67349.1|CBM13 121 FVIASESNeNLVLDVKGGDRSQGAQILLWTANGQNNQKWIYE-N----GVIKSVNSGLAIDVKGGaKEGSPLIQWQPHGGDNQQWIWD 203 44555554379****977779**********9*********5.3....79*************99666*****************875 PP == domain 2 score: 17.9 bits; conditional E-value: 1.6e-07 CBM13.hmm 99 rnras.gkcLdvkgg..adgtpvqqwdcngganQqWsv 133 + s +++dvkgg +g+ ++ w +g+anQ+W++ AEW67349.1|CBM13 208 KL-RSgSLAIDVKGGniHQGAEIVAWRPHGNANQRWRI 244 33.34159999997777779999999999999999965 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (245 residues searched) Target model(s): 1 (188 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 18.00 // Query: AEW67350.1|CBM13 [L=366] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-27 83.8 20.4 3.7e-22 65.6 4.5 3.5 3 CBM13.hmm Domain annotation for each model (and alignments): >> CBM13.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 8.8 3.8 9.9e-05 9.9e-05 48 135 .. 28 101 .. 18 143 .. 0.46 2 ! 65.6 4.5 3.7e-22 3.7e-22 50 134 .. 243 324 .. 234 329 .. 0.84 3 ! 17.5 0.3 2.2e-07 2.2e-07 99 133 .. 329 365 .. 323 366 .] 0.77 Alignments for each domain: == domain 1 score: 8.8 bits; conditional E-value: 9.9e-05 CBM13.hmm 48 tirlenhqsgkcLdvaasstaagaevqqytcngganQqWrlesvgsgyykirnrasgkcLdvkggadgtpvqqwdcngganQqWsvlk 135 +++le+h+ k L++ ++++++q + g + + +++v++gy ir+ + gk L v++ +g v cn ++ qW + AEW67350.1|CBM13 28 YVTLESHHH-KYLSA-----QQNGTLQWNRDKIGEWEVFYVTKVANGY-NIRSFH-GKYLCVEQ--NGRVV----CNRDNPAQWETFE 101 555555552.46652.....2333333333323356666665555554.555522.34444442..23222....2221122233322 PP == domain 2 score: 65.6 bits; conditional E-value: 3.7e-22 CBM13.hmm 50 rlenhqs.gkcLdvaasstaagaevqqytcngganQqWrlesvgsgyykirnrasgkcLdvkgg.adgtpvqqwdcngganQqWsvl 134 + + ++ +++Ldv ++ +ga++ ++t ng++nQ+W++e + ++i++++sg+++dvkgg g+p++qwd +gg+nQqW + AEW67350.1|CBM13 243 VIASESNeNLVLDVKGGDKKKGAQILLWTANGQNNQKWTYE-N----GVIKSVNSGLAIDVKGGaKEGSPLIQWDPHGGDNQQWIWD 324 4444443479****977768**********9*********5.3....79*************99666*****************875 PP == domain 3 score: 17.5 bits; conditional E-value: 2.2e-07 CBM13.hmm 99 rnras.gkcLdvkgg..adgtpvqqwdcngganQqWsv 133 + s +++dvkgg +g+ ++ w+ +g+anQ+W++ AEW67350.1|CBM13 329 KL-RSgSLAIDVKGGniKQGAEIVAWKPHGNANQRWKI 365 33.441599****7778889****************75 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (366 residues searched) Target model(s): 1 (188 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 16.92 // Query: AEW67352.1|CBM13 [L=148] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-23 70.6 6.8 2.2e-19 56.6 3.0 2.2 2 CBM13.hmm Domain annotation for each model (and alignments): >> CBM13.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.6 3.0 2.2e-19 2.2e-19 48 132 .. 23 106 .. 5 113 .. 0.81 2 ! 16.6 0.1 4.1e-07 4.1e-07 98 133 .. 109 147 .. 103 148 .] 0.82 Alignments for each domain: == domain 1 score: 56.6 bits; conditional E-value: 2.2e-19 CBM13.hmm 48 tirlenhqs.gkcLdvaasstaagaevqqytcngganQqWrlesvgsgyykirnrasgkcLdvkgg.adgtpvqqwdcngganQq..Ws 132 ++ + + ++ +++L v + ++g+++ ++t ng++nQ+W++ +g + i++++sg+++dvkgg g+p++qw+ +g++nQq W AEW67352.1|CBM13 23 QFVIASESNeNLVLGVKGADKNQGTKILLWTANGQNNQKWTY--EG---GMIKSVNSGLAIDVKGGaKEGSPLIQWQPHGKDNQQriWD 106 555666664479***9966668**********9*********..44...68*************99666************99984464 PP == domain 2 score: 16.6 bits; conditional E-value: 4.1e-07 CBM13.hmm 98 irnrasg.kcLdvkgg..adgtpvqqwdcngganQqWsv 133 ++ sg +++d+kgg ++ + v+ w+ +g+ nQ+W++ AEW67352.1|CBM13 109 LIKLKSGsLVIDIKGGtiQQEAEVVAWKPHGNENQRWKI 147 55557755******99987789***************75 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (148 residues searched) Target model(s): 1 (188 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 11.54 // Query: AEW67346.1|CBM13 [L=225] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-27 82.9 9.6 9.9e-23 67.5 5.2 2.1 2 CBM13.hmm Domain annotation for each model (and alignments): >> CBM13.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 67.5 5.2 9.9e-23 9.9e-23 50 134 .. 102 183 .. 92 191 .. 0.84 2 ! 18.5 0.3 1.1e-07 1.1e-07 99 133 .. 188 224 .. 182 225 .] 0.77 Alignments for each domain: == domain 1 score: 67.5 bits; conditional E-value: 9.9e-23 CBM13.hmm 50 rlenhqs.gkcLdvaasstaagaevqqytcngganQqWrlesvgsgyykirnrasgkcLdvkgg.adgtpvqqwdcngganQqWsvl 134 + + ++ +++Ldv ++ ++ga++ ++t ng++nQ+W++e + ++i++++sg+++dvkgg g+p++qwd +gg+nQqW + AEW67346.1|CBM13 102 VIASESNeNLVLDVKGGDKNKGAQILLWTANGQNNQKWTYE-N----GVIKSVNSGLAIDVKGGaKEGSPLIQWDPHGGDNQQWIWD 183 4444453479****977779**********9*********5.3....79*************99666*****************875 PP == domain 2 score: 18.5 bits; conditional E-value: 1.1e-07 CBM13.hmm 99 rnras.gkcLdvkgg..adgtpvqqwdcngganQqWsv 133 + s +++dvkgg +g+ ++ w+ +g+anQ+W++ AEW67346.1|CBM13 188 KL-RSgSLAIDVKGGniKQGAEIVAWKPHGNANQRWKI 224 33.441599****7778889****************75 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (225 residues searched) Target model(s): 1 (188 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 18.45 // Query: AEW67351.1|CBM13 [L=215] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.1e-28 84.8 7.8 1.6e-22 66.8 2.4 2.0 2 CBM13.hmm Domain annotation for each model (and alignments): >> CBM13.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 66.8 2.4 1.6e-22 1.6e-22 48 134 .. 90 172 .. 80 177 .. 0.86 2 ! 27.9 0.3 1.4e-10 1.4e-10 80 133 .. 163 213 .. 162 215 .] 0.82 Alignments for each domain: == domain 1 score: 66.8 bits; conditional E-value: 1.6e-22 CBM13.hmm 48 tirlenhqsgkcLdvaasstaagaevqqytcngganQqWrlesvgsgyykirnrasgkcLdvkgg.adgtpvqqwdcngganQqWsvl 134 +i le++ + ++Ld+ + s ++ga+v++++++g +nQ+W ++++ ++i++++sg++Ld+kgg ++g++++qw+ +gg nQqW + AEW67351.1|CBM13 90 SIHLESNPN-LALDIKGASRDQGAKVILWDYHGHPNQKWIYNQN----GTIISANSGLALDIKGGpNQGSNLIQWQPHGGVNQQWIFD 172 567777765.9***9966669**********999*******877....78***99********99777*****************875 PP == domain 2 score: 27.9 bits; conditional E-value: 1.4e-10 CBM13.hmm 80 gganQqWrlesvgsgyykirnrasg.kcLdvkgg..adgtpvqqwdcngganQqWsv 133 gg nQqW + + +g k+ sg +cLdvkg+ +gt ++ w+ +g++nQ++ + AEW67351.1|CBM13 163 GGVNQQWIF--D-NGLIKL---RSGyLCLDVKGAqcCQGTEIVAWAPHGQHNQRFII 213 778******..4.455444...6677******988888****************965 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (215 residues searched) Target model(s): 1 (188 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: 17.90 // Query: AFZ78852.1|CBM13 [L=221] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.3e-28 84.5 7.2 2.1e-22 66.5 2.0 2.0 2 CBM13.hmm Domain annotation for each model (and alignments): >> CBM13.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 66.5 2.0 2.1e-22 2.1e-22 48 134 .. 96 178 .. 86 183 .. 0.86 2 ! 27.9 0.3 1.4e-10 1.4e-10 80 133 .. 169 219 .. 168 221 .] 0.82 Alignments for each domain: == domain 1 score: 66.5 bits; conditional E-value: 2.1e-22 CBM13.hmm 48 tirlenhqsgkcLdvaasstaagaevqqytcngganQqWrlesvgsgyykirnrasgkcLdvkgg.adgtpvqqwdcngganQqWsvl 134 +i le++ + ++Ld+ + s ++ga+v++++++g +nQ+W ++++ ++i++++sg++Ld+kgg ++g++++qw+ +gg nQqW + AFZ78852.1|CBM13 96 SIHLESNPN-LALDIKGASRDQGAKVILWDYHGHPNQKWIYNQN----GTIISASSGLALDIKGGpNQGSNLIQWQPHGGVNQQWIFD 178 567777765.9***9966669**********999*******877....78***999*******99777*****************875 PP == domain 2 score: 27.9 bits; conditional E-value: 1.4e-10 CBM13.hmm 80 gganQqWrlesvgsgyykirnrasg.kcLdvkgg..adgtpvqqwdcngganQqWsv 133 gg nQqW + + +g k+ sg +cLdvkg+ +gt ++ w+ +g++nQ++ + AFZ78852.1|CBM13 169 GGVNQQWIF--D-NGLIKL---RSGyLCLDVKGAqcCQGTEIVAWAPHGQHNQRFII 219 778******..4.455444...6677******988888****************965 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (221 residues searched) Target model(s): 1 (188 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 18.97 // [ok]