# hmmscan :: search sequence(s) against a profile database # HMMER 3.3.2 (Nov 2020); http://hmmer.org/ # Copyright (C) 2020 Howard Hughes Medical Institute. # Freely distributed under the BSD open source license. # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: /array2/siva/dbcansub_update/cazy2025/match_results/dbsub_data_2025/merged_clusters/CBM13/fasta_for_each_cluster/cluster_18.txt # target HMM database: merged_hmms/CBM13.hmm # per-dom hits tabular output: hmmscan_out/domain_result/CBM13/CBM13_cluster_18.out.dm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: ASP17232.1|CBM13 [L=155] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-24 73.8 0.0 1.9e-24 73.1 0.0 1.3 1 CBM13.hmm Domain annotation for each model (and alignments): >> CBM13.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.1 0.0 1.9e-24 1.9e-24 10 131 .. 44 153 .. 39 155 .] 0.85 Alignments for each domain: == domain 1 score: 73.1 bits; conditional E-value: 1.9e-24 CBM13.hmm 10 vnvnsgkclggstaaganvqlwdccnganQqWtltsdg.tirlenhqsgkcLdvaasstaagaevqqytcngganQqWrlesvgsgyykirnr 101 + + g cl+ + +g++++ ++c++ anQq+++++++ +ir +n cLdva++ g++v++y c+gg nQqW e +r++ ASP17232.1|CBM13 44 IRTGGGECLDVHGGDGKTLIRHACHGRANQQFRFDPASgAIR-QNG---GCLDVAGGERREGTPVILYRCHGGRNQQWYAEGA-----ALRSA 127 566799***99999999999999887899********83444.444...3****966668******************99544.....7***9 PP CBM13.hmm 102 asgkcLdvkggadgtpvqqwdcngganQqW 131 sg+cLd++ +++++ cng+ Q + ASP17232.1|CBM13 128 DSGLCLDASD----SRITVRRCNGSRAQAF 153 99*******4....78********888976 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (155 residues searched) Target model(s): 1 (188 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 30.09 // [ok]