# hmmscan :: search sequence(s) against a profile database # HMMER 3.3.2 (Nov 2020); http://hmmer.org/ # Copyright (C) 2020 Howard Hughes Medical Institute. # Freely distributed under the BSD open source license. # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: /array2/siva/dbcansub_update/cazy2025/match_results/dbsub_data_2025/merged_clusters/CBM101/fasta_for_each_cluster/cluster_3.txt # target HMM database: merged_hmms/CBM101.hmm # per-dom hits tabular output: hmmscan_out/domain_result/CBM101/CBM101_cluster_3.out.dm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: ADE53518.1|CBM101|GH86 [L=1122] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4e-96 302.5 7.7 7.3e-34 102.5 0.1 3.9 4 CBM101.hmm Domain annotation for each model (and alignments): >> CBM101.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.9 0.0 0.5 0.5 10 48 .. 510 550 .. 503 562 .. 0.66 2 ! 99.7 0.0 5.4e-33 5.4e-33 3 97 .. 758 851 .. 756 859 .. 0.93 3 ! 102.5 0.1 7.3e-34 7.3e-34 2 94 .. 880 973 .. 879 983 .. 0.94 4 ! 102.3 0.5 8.8e-34 8.8e-34 3 95 .. 1009 1102 .. 1007 1111 .. 0.94 Alignments for each domain: == domain 1 score: -2.9 bits; conditional E-value: 0.5 CBM101.hmm 10 tlsvtveYdaG..sgqtveedlggvavlLReldsswsvvnd 48 t+ +t+ Y+ + g+t +e+ + + L+ ++++ + + ADE53518.1|CBM101|GH86 510 TVLLTCRYASNlaIGETSTETKYYASSYLQAITANTPLTFQ 550 66677777654215788888889999999998888654444 PP == domain 2 score: 99.7 bits; conditional E-value: 5.4e-33 CBM101.hmm 3 teikaGstlsvtveYdaGsgqtveedlggvavlLReldsswsvvndyevvdasaigtqsgtstvsitl.snippsaeLpaGnfYfLl 88 +++ aGs+l+v + YdaG+g++v++ g++++LRel+ssw+vvndy+v d sa+gtq g s ++i+l n+p+s+eLpaGnfYfL+ ADE53518.1|CBM101|GH86 758 QTYTAGSSLPVRCIYDAGNGNQVAA--RGIRYMLRELTSSWQVVNDYVVDDLSAVGTQCGASFAEIQLpGNLPASSELPAGNFYFLF 842 6899*******************77..7*********************************************************** PP CBM101.hmm 89 vfmssdgda 97 v +++++++ ADE53518.1|CBM101|GH86 843 VALNTENES 851 ***998654 PP == domain 3 score: 102.5 bits; conditional E-value: 7.3e-34 CBM101.hmm 2 steikaGstlsvtveYdaGsgqtveedlggvavlLReldsswsvvndyevvdasaigtqsgtstvsitl.snippsaeLpaGnfYfL 87 +t++ aG+tl+vt+ YdaGsg+tv++++gg++++LRe++s+w+vv+dy+++dasa g++sg st+ i+l ++p+s+eL++GnfYfL ADE53518.1|CBM101|GH86 880 NTDYIAGHTLDVTTFYDAGSGYTVTSKQGGIQYMLREVTSDWQVVRDYTAFDASALGEHSGISTTAIQLpGDMPASSELAPGNFYFL 966 67899********************************************************************************** PP CBM101.hmm 88 lvfmssd 94 ++ +++ ADE53518.1|CBM101|GH86 967 YALFETL 973 **99875 PP == domain 4 score: 102.3 bits; conditional E-value: 8.8e-34 CBM101.hmm 3 teikaGstlsvtveYdaGsgqtveedlggvavlLReldsswsvvndyevvdasaigtqsgtstvsitl.snippsaeLpaGnfYf 86 +++ Gs ++v+++YdaGsg++v+++ +gv+++LRel+s+w+vvndy++vd +igtq+g+s++si l +++p+a+Lp+G+fY+ ADE53518.1|CBM101|GH86 1009 QSFTVGSVMDVSTTYDAGSGYSVNAEANGVQYMLRELTSNWQVVNDYIAVDTLSIGTQAGESSASIVLpPEMTPTAQLPSGHFYY 1093 67899******************************************************************************** PP CBM101.hmm 87 Llvfmssdg 95 L+ + +d+ ADE53518.1|CBM101|GH86 1094 LYTIFGTDN 1102 **9998874 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1122 residues searched) Target model(s): 1 (102 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 86.99 // Query: UZO82601.1|CBM101|GH86 [L=882] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.3e-27 81.7 0.4 9.6e-27 79.7 0.4 2.1 1 CBM101.hmm Domain annotation for each model (and alignments): >> CBM101.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 79.7 0.4 9.6e-27 9.6e-27 5 98 .. 690 791 .. 678 801 .. 0.88 Alignments for each domain: == domain 1 score: 79.7 bits; conditional E-value: 9.6e-27 CBM101.hmm 5 ikaGstlsvtveYdaGsgqtveedlggvavlLReldsswsvvnd..ye.vvdasaigtqsgtstvsitl.sn......ippsaeLpa 81 ++ G+ ++++v+Y++G ++++eedl+++a+++R++d s+++vn+ ++ ++ +a +t gt+t+++t+ ++ ip+ ++Lp+ UZO82601.1|CBM101|GH86 690 VEFGQVMDINVTYKTGITGGTEEDLTYIATQVRQVDGSGNTVNNsaFTsSIPGTADNT--GTFTYQYTVpDKfsddtdIPSFNDLPS 774 456888*************************************977666788888887..*********655*************** PP CBM101.hmm 82 GnfYfLlvfmssdgdag 98 G++++Ll+fms+dgd++ UZO82601.1|CBM101|GH86 775 GHRLLLLIFMSVDGDSN 791 *************8876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (882 residues searched) Target model(s): 1 (102 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 112.03 // Query: AXP07846.1|CBM101|GH86 [L=963] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.2e-33 99.8 0.0 1.5e-32 98.4 0.0 1.8 1 CBM101.hmm Domain annotation for each model (and alignments): >> CBM101.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 98.4 0.0 1.5e-32 1.5e-32 2 98 .. 853 948 .. 852 955 .. 0.94 Alignments for each domain: == domain 1 score: 98.4 bits; conditional E-value: 1.5e-32 CBM101.hmm 2 steikaGstlsvtveYdaGsgqtveedlggvavlLReldsswsvvndyevvdasaigtqsgtstvsitlsnippsaeLpaGnfYfLl 88 +t +k Gstl+vt++++a++g++v d++g++++LRel+s+wsvv+d +v+d+s++++++g +++si+l++++ps++LpaGnfY+L+ AXP07846.1|CBM101|GH86 853 QTIYKVGSTLPVTCSFRATTGRKV--DEKGLKFWLRELRSNWSVVKDRVVYDPSTADKNTGIASASISLKDLTPSTALPAGNFYYLW 937 57899*******************..668********************************************************** PP CBM101.hmm 89 vfmssd.gdag 98 v+++ d g+++ AXP07846.1|CBM101|GH86 938 VTFTEDnGTQI 948 ***99956554 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (963 residues searched) Target model(s): 1 (102 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 128.44 // Query: AXP07839.1|CBM101|GH86 [L=1026] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4e-13 35.9 0.1 2.2e-12 33.5 0.1 2.3 1 CBM101.hmm Domain annotation for each model (and alignments): >> CBM101.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.5 0.1 2.2e-12 2.2e-12 4 96 .. 843 932 .. 841 939 .. 0.89 Alignments for each domain: == domain 1 score: 33.5 bits; conditional E-value: 2.2e-12 CBM101.hmm 4 eikaGstlsvtveYdaGsgqtveedlggvavlLReldsswsvvndyevvdasaigtqsgtstvsitlsnippsaeLpaGnfYfLlvf 90 ++ka s++++++++ ++g+t g ++lL d ++++ ++y ++d+s+ + +g++++s++ ++p+++Lp+G++Y+ + AXP07839.1|CBM101|GH86 843 QVKAESSVQINCSFTITTGRTA----MGAEFLLMLKDGDGTILKKYSAYDNSVKDLTAGNANASLSTRRLTPTNSLPQGQYYIFEIL 925 5788999*******98877665....899******************************************************9998 PP CBM101.hmm 91 mssd.gd 96 ++ + g+ AXP07839.1|CBM101|GH86 926 ITESdGN 932 8776454 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1026 residues searched) Target model(s): 1 (102 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 125.98 // Query: XPF93141.1|CBM101|CBM6|GH86 [L=1628] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-84 265.6 12.0 5.9e-36 109.3 0.1 5.1 5 CBM101.hmm Domain annotation for each model (and alignments): >> CBM101.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.9 0.0 0.49 0.49 4 19 .. 573 588 .. 564 597 .. 0.76 2 ? -0.7 0.4 0.11 0.11 41 71 .. 791 822 .. 784 852 .. 0.72 3 ! 105.3 0.1 1e-34 1e-34 3 95 .. 1181 1273 .. 1179 1282 .. 0.94 4 ! 109.3 0.1 5.9e-36 5.9e-36 3 95 .. 1309 1402 .. 1307 1411 .. 0.95 5 ! 55.2 0.1 3.9e-19 3.9e-19 3 96 .. 1446 1550 .. 1444 1560 .. 0.88 Alignments for each domain: == domain 1 score: -2.9 bits; conditional E-value: 0.49 CBM101.hmm 4 eikaGstlsvtveYda 19 + ++Gst+ +++eY+ XPF93141.1|CBM101|CBM6|GH86 573 TLEPGSTIILDIEYNQ 588 5678888888988874 PP == domain 2 score: -0.7 bits; conditional E-value: 0.11 CBM101.hmm 41 sswsvvnd.yevvdasaigtqsgtstvsitls 71 +w+ n +++vd+++ t +g t++it + XPF93141.1|CBM101|CBM6|GH86 791 VNWTSSNVnIVAVDQNGLATGTGAGTTTITAT 822 57877666455899998888865555555543 PP == domain 3 score: 105.3 bits; conditional E-value: 1e-34 CBM101.hmm 3 teikaGstlsvtveYdaGsgqtveedlggvavlLReldsswsvvndyevvdasaigtqsgtstvsitlsnippsaeLpaG 82 t++ ++tl+v ++++aG+g++ve +l+gv+++LRe+d+sw+vv+d ++da+++g+qsgt+t++i+l++++p+a+Lp+G XPF93141.1|CBM101|CBM6|GH86 1181 TTYYVDGTLDVAANFQAGTGHSVEGELNGVKFFLREMDASWAVVKDTLAFDATTVGKQSGTATAKISLAGLTPTADLPTG 1260 6677899************************************************************************* PP CBM101.hmm 83 nfYfLlvfmssdg 95 nfYfL++ ++s++ XPF93141.1|CBM101|CBM6|GH86 1261 NFYFLFAAFKSSD 1273 *********9973 PP == domain 4 score: 109.3 bits; conditional E-value: 5.9e-36 CBM101.hmm 3 teikaGstlsvtveYdaGsgqtveedlggvavlLReldsswsvvndyevvdasaigtqsgtstvsitlsnippsaeLpaG 82 t++ +G+tl+vt++++aGsgqtv++dl+gv+++LRe+d+sw++v+d+ ++d +aig+qsg ++++i+l ++ psaeLp+G XPF93141.1|CBM101|CBM6|GH86 1309 TTYTTGGTLPVTANFEAGSGQTVAADLNGVKFFLREMDASWTLVKDVLAYDGTAIGKQSGVASANISLVDVLPSAELPSG 1388 7899**************************************************************************** PP CBM101.hmm 83 nfYfLlvfmssd.g 95 nfYfL++ ++s+ g XPF93141.1|CBM101|CBM6|GH86 1389 NFYFLYAAFQSTdG 1402 *********99844 PP == domain 5 score: 55.2 bits; conditional E-value: 3.9e-19 CBM101.hmm 3 teikaGstlsvtveYdaGsgqtvee.dl....ggvavlLReldsswsvvndyevvdasaigtqsgtstvsitlsn..... 72 t +++G+ l++t++++aG+++tv + + gg++++L+el++++s v+ ++v ++s+ig+q+g +tv+i+l XPF93141.1|CBM101|CBM6|GH86 1446 TVYPKGGILTLTAKFEAGANNTVVSsSFagvtGGIQFILQELRENGSQVKRVVVGESSSIGQQNGWLTVDIPLVHptqgd 1525 6799******************9773333333799**************************************5558999 PP CBM101.hmm 73 ippsaeLpaGnfYfLlvfmssd.gd 96 + +s+eL aG++Y L ++++s+ g+ XPF93141.1|CBM101|CBM6|GH86 1526 LKASDELNAGHYYNLTARFKSSnGS 1550 ********************98444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1628 residues searched) Target model(s): 1 (102 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 113.12 // Query: AWB65709.1|CBM101|GH86 [L=1394] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.5e-96 302.3 11.1 3e-34 103.8 0.1 3.8 3 CBM101.hmm Domain annotation for each model (and alignments): >> CBM101.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 98.9 2.3 9.9e-33 9.9e-33 2 95 .. 753 845 .. 752 856 .. 0.93 2 ! 103.8 0.1 3e-34 3e-34 2 95 .. 877 971 .. 876 979 .. 0.93 3 ! 103.5 0.1 3.6e-34 3.6e-34 6 97 .. 1005 1097 .. 1001 1108 .. 0.93 Alignments for each domain: == domain 1 score: 98.9 bits; conditional E-value: 9.9e-33 CBM101.hmm 2 steikaGstlsvtveYdaGsgqtveedlggvavlLReldsswsvvndyevvdasaigtqsgtstvsitlsnippsaeLpaGnfYfLl 88 ++e+++G++++v+++Y+aG++q+v++ gv + LRel+s+wsvv+d++v+d++++ +q+gtstv+i+l++++++a+L +GnfY+L+ AWB65709.1|CBM101|GH86 753 NSEYQSGTSMQVSTQYEAGTDQGVNN--AGVIYYLRELRSNWSVVKDVVVTDKTVVTQQRGTSTVNIPLDGVTATADLEEGNFYYLF 837 6789********************66..7********************************************************** PP CBM101.hmm 89 vfmssd.g 95 v+++s+ g AWB65709.1|CBM101|GH86 838 VKFTSTdG 845 ***99844 PP == domain 2 score: 103.8 bits; conditional E-value: 3e-34 CBM101.hmm 2 steikaGstlsvtveYdaGsgqtveedlggvavlLReldsswsvvndyevvdasaigtqsgtstvsitlsnippsaeLpaGnfYfLl 88 +t+++ G+tl+vt++Y+aG+g ++++++gg++++LRel+ +w+v +d++v dasaig+qsgts+vsi+ls+++p+a L++G+fY+L+ AWB65709.1|CBM101|GH86 877 TTAYQIGETLDVTTHYEAGTGAKISDEVGGIRYFLRELRPNWTVEKDVIVDDASAIGQQSGTSSVSIPLSSVTPTALLADGHFYYLF 963 6899*********************************************************************************** PP CBM101.hmm 89 vfmssd.g 95 v+ + g AWB65709.1|CBM101|GH86 964 VRYVDTnG 971 99766534 PP == domain 3 score: 103.5 bits; conditional E-value: 3.6e-34 CBM101.hmm 6 kaGstlsvtveYdaGsgqtveedlggvavlLReldsswsvvndyevvdasaigtqsgtstvsitlsnippsaeLpaGnfYfLlvf 90 + s+++vt++++aG+gqtv++ +g++++LRe++++w+vv+d++v d s+ig q+g stv+i+l+++ ps++Lp+G+fYfL++ AWB65709.1|CBM101|GH86 1005 TQNSSITVTTNFEAGAGQTVAASKNGIRYFLREMRANWTVVRDVKVEDTSVIGVQTGVSTVTIPLTGLLPSDQLPEGHFYFLYAL 1089 66789******************************************************************************** PP CBM101.hmm 91 mssd.gda 97 ++s+ g++ AWB65709.1|CBM101|GH86 1090 FDSTdGTT 1097 *9995554 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1394 residues searched) Target model(s): 1 (102 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 128.47 // [ok]