# hmmscan :: search sequence(s) against a profile database # HMMER 3.3.2 (Nov 2020); http://hmmer.org/ # Copyright (C) 2020 Howard Hughes Medical Institute. # Freely distributed under the BSD open source license. # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: /array2/siva/dbcansub_update/cazy2025/match_results/dbsub_data_2025/merged_clusters/CBM101/fasta_for_each_cluster/cluster_2.txt # target HMM database: merged_hmms/CBM101.hmm # per-dom hits tabular output: hmmscan_out/domain_result/CBM101/CBM101_cluster_2.out.dm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: AXP07847.1|CBM101|GH86 [L=876] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.7e-37 112.1 0.9 1.1e-35 108.4 0.2 2.5 2 CBM101.hmm Domain annotation for each model (and alignments): >> CBM101.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 108.4 0.2 1.1e-35 1.1e-35 4 96 .. 683 777 .. 680 789 .. 0.92 2 ? 1.2 0.0 0.027 0.027 67 82 .. 839 854 .. 812 866 .. 0.84 Alignments for each domain: == domain 1 score: 108.4 bits; conditional E-value: 1.1e-35 CBM101.hmm 4 eikaGstlsvtveYdaGsgqtveedlggvavlLReldssws.vvndyevvdasaigtqsgtstvsitlsnippsaeLpaGnfYfLlv 89 e+ + +tl+v v+Y+aG+g+tv+++lggv v+LRe++s+w+ vv+d +v+dasaig+q+g++++si+lsn++ps+eLp+GnfYfLl AXP07847.1|CBM101|GH86 683 EYFTEGTLDVYVNYEAGTGNTVSNELGGVMVMLREMTSDWNtVVKDHVVSDASAIGKQNGQAKISIDLSNLTPSNELPNGNFYFLLP 769 5556789*********************************9899******************************************* PP CBM101.hmm 90 fmssd.gd 96 +++++ g+ AXP07847.1|CBM101|GH86 770 RFKTStGE 777 **998554 PP == domain 2 score: 1.2 bits; conditional E-value: 0.027 CBM101.hmm 67 sitlsnippsaeLpaG 82 ++ ++n++++a+Lp+G AXP07847.1|CBM101|GH86 839 QLIIDNAISTAQLPNG 854 556799*********9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (876 residues searched) Target model(s): 1 (102 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 81.25 // Query: UXX79142.1|CBM101|CBM6|GH86 [L=1845] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.6e-22 64.4 3.6 9.9e-22 63.6 0.1 3.2 2 CBM101.hmm Domain annotation for each model (and alignments): >> CBM101.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 63.6 0.1 9.9e-22 9.9e-22 2 96 .. 1478 1570 .. 1477 1579 .. 0.92 2 ? -1.1 0.6 0.14 0.14 40 71 .. 1625 1658 .. 1621 1709 .. 0.66 Alignments for each domain: == domain 1 score: 63.6 bits; conditional E-value: 9.9e-22 CBM101.hmm 2 steikaGstlsvtveYdaGsgqtveedlggvavlLReldssws.vvndyevvdasaigtqsgtstvsitlsnippsaeLp 80 +t+++ Gstl+v+++++ G+g+ d +gv+++LR++++ w+ + +d++v+d s++g q+gt+t+si+l+++ p++e UXX79142.1|CBM101|CBM6|GH86 1478 NTTYEVGSTLDVSCTFQVGAGGVL--DANGVTFWLRQVTAGWAgITKDIKVNDVSVAGLQNGTATASISLADLLPTNEIG 1555 57899**************88888..779**************999********************************98 PP CBM101.hmm 81 aGnfYfLlvfmssdgd 96 + +fYfL+++++ +g UXX79142.1|CBM101|CBM6|GH86 1556 T-DFYFLWITFTPSGG 1570 7.6********98754 PP == domain 2 score: -1.1 bits; conditional E-value: 0.14 CBM101.hmm 40 dsswsvvndye..vvdasaigtqsgtstvsitls 71 + sws+ ++++ vvd ++ t gt t+++t + UXX79142.1|CBM101|CBM6|GH86 1625 NVSWSTQDEAIatVVDGVVTATGVGTTTITVTTA 1658 5579888885513555555555455555555543 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1845 residues searched) Target model(s): 1 (102 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 156.87 // Query: ANW95064.1|CBM101|GH86 [L=829] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.3e-31 92.9 1.4 2.4e-30 91.2 1.4 2.0 1 CBM101.hmm Domain annotation for each model (and alignments): >> CBM101.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 91.2 1.4 2.4e-30 2.4e-30 2 98 .. 16 111 .. 15 120 .. 0.91 Alignments for each domain: == domain 1 score: 91.2 bits; conditional E-value: 2.4e-30 CBM101.hmm 2 steikaGstlsvtveYdaGsgqtveedlggvavlLReldsswsvvndye.vvdasaigtq.sgtstvsitl.snippsaeLpaGnfY 85 +t+i++G+t++++++YdaG g+tv +v+v+L+e+++sw++ n+y+ +++ s+ ++ ++t+++++t+ snip s++Lp+GnfY ANW95064.1|CBM101|GH86 16 QTDIQPGETIPLNITYDAGVGNTV----YYVSVVLQEMNASWQTQNNYNtTYPVSGSNQPnASTIDFNYTIdSNIPLSENLPSGNFY 98 789****************77777....9********************9******999867************************* PP CBM101.hmm 86 fLlvfmssdgdag 98 +L +f+s+++d+ ANW95064.1|CBM101|GH86 99 LLKIFISVNTDGA 111 ********96654 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (829 residues searched) Target model(s): 1 (102 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 122.69 // Query: AUS06240.1|CBM101|GH86 [L=854] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.5e-24 71.1 0.5 2.5e-23 68.7 0.5 2.3 2 CBM101.hmm Domain annotation for each model (and alignments): >> CBM101.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 68.7 0.5 2.5e-23 2.5e-23 4 98 .. 37 128 .. 30 141 .. 0.87 2 ? -2.2 0.0 0.31 0.31 27 41 .. 208 222 .. 188 225 .. 0.83 Alignments for each domain: == domain 1 score: 68.7 bits; conditional E-value: 2.5e-23 CBM101.hmm 4 eikaGstlsvtveYdaGsgqtveedlggvavlLReldsswsvvndye.vvdasaigtq...sgtstvsitl.snippsaeLpaGnfY 85 ++ +G+ +++t++Y+ ++ d+++++v+L+e ++++++vn+y + +++ +q s+t+++++t+ +n+p++ LpaGn+Y AUS06240.1|CBM101|GH86 37 NFYPGQVINMTLSYS------TPGDFSYIQVILQEKNAANAIVNSYGsDYVRNEGAGQqpnSDTFSTTYTIaANAPTT--LPAGNYY 115 5678999*******8......789*********************99977776666655999****************..******* PP CBM101.hmm 86 fLlvfmssdgdag 98 fL++fm++ +++g AUS06240.1|CBM101|GH86 116 FLHMFMWTVSNGG 128 ********97766 PP == domain 2 score: -2.2 bits; conditional E-value: 0.31 CBM101.hmm 27 edlggvavlLRelds 41 d gg+++ L ++++ AUS06240.1|CBM101|GH86 208 RDTGGITFNLNQVNE 222 6899******99987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (854 residues searched) Target model(s): 1 (102 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 114.12 // Query: QBG45915.1|CBM101|GH86 [L=1150] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-31 95.4 0.6 7.6e-31 92.9 0.0 2.6 3 CBM101.hmm Domain annotation for each model (and alignments): >> CBM101.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.9 0.0 1 1 17 36 .. 467 484 .. 459 507 .. 0.47 2 ! 92.9 0.0 7.6e-31 7.6e-31 3 96 .. 814 912 .. 812 921 .. 0.93 3 ? -1.5 0.0 0.18 0.18 73 96 .. 978 1001 .. 966 1006 .. 0.82 Alignments for each domain: == domain 1 score: -3.9 bits; conditional E-value: 1 CBM101.hmm 17 YdaGsgqtveedlggvavlL 36 Y+ ++g+ v + +v+ L QBG45915.1|CBM101|GH86 467 YADAAGNVVLD--HYVTNEL 484 44333333333..2333222 PP == domain 2 score: 92.9 bits; conditional E-value: 7.6e-31 CBM101.hmm 3 teikaGstlsvtveYdaGsgqtveedlggvavlLReldss...wsvvndyevvdasaigtqsgtstvsitl.snippsaeLpaGnfY 85 + +G+ ++v++eYdaG+g++v + +g+++ LR++dss wsvv+dy+++da a+gt++g s+++i++ ++i+ps++Lpa+nfY QBG45915.1|CBM101|GH86 814 RHFTNGTYMTVKTEYDAGAGHAVLSPSDGISYKLRQIDSSggsWSVVKDYAANDAGAAGTSAGVSEAQIRIpEDIIPSDQLPADNFY 900 56899**********************************9888******************************************** PP CBM101.hmm 86 fLlvfmssd.gd 96 +L+++++s+ g QBG45915.1|CBM101|GH86 901 YLFASFDSTdGG 912 ******998443 PP == domain 3 score: -1.5 bits; conditional E-value: 0.18 CBM101.hmm 73 ippsaeLpaGnfYfLlvfmssdgd 96 +++ +L G Y+L + m+ +g+ QBG45915.1|CBM101|GH86 978 LTNAVQLGVGGTYSLTINMEFSGT 1001 56677899999******9998765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1150 residues searched) Target model(s): 1 (102 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 129.06 // Query: WNH11944.1|CBM101|GH86 [L=835] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.1e-24 70.3 0.1 5.9e-23 67.5 0.0 2.4 2 CBM101.hmm Domain annotation for each model (and alignments): >> CBM101.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 67.5 0.0 5.9e-23 5.9e-23 4 98 .. 32 126 .. 29 134 .. 0.88 2 ? -1.1 0.0 0.14 0.14 26 42 .. 200 216 .. 189 249 .. 0.82 Alignments for each domain: == domain 1 score: 67.5 bits; conditional E-value: 5.9e-23 CBM101.hmm 4 eikaGstlsvtveYdaGsgqtveedlggvavlLReldsswsvvnd...yevvdasaigtq...sgtstvsitl.snippsaeLpaGn 83 ++++G++++++++Y ++ d++++++++Rel++s+++v+d +++++ s+ ++ ++t+++++t+ +n++++a+L++Gn WNH11944.1|CBM101|GH86 32 TFAPGQSVTINLSY-------TSPDVDYICIWVRELTASGTIVKDygaFTTCPLSGGPDNhpnTDTISYNYTIpANVVETASLAPGN 111 6899**********.......589*********************7755688999988888889*********************** PP CBM101.hmm 84 fYfLlvfmssdgdag 98 +Y+L++fm +dg + WNH11944.1|CBM101|GH86 112 YYSLVIFMVNDGGGS 126 ********9995443 PP == domain 2 score: -1.1 bits; conditional E-value: 0.14 CBM101.hmm 26 eedlggvavlLReldss 42 d gg+++ L +++++ WNH11944.1|CBM101|GH86 200 GRDTGGITYNLNQVTQD 216 45899*******99986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (835 residues searched) Target model(s): 1 (102 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 115.25 // Query: QQY83579.1|CBM101|GH86 [L=854] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-23 69.7 1.4 6.5e-23 67.4 1.2 2.3 2 CBM101.hmm Domain annotation for each model (and alignments): >> CBM101.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 67.4 1.2 6.5e-23 6.5e-23 4 98 .. 37 128 .. 30 146 .. 0.89 2 ? -1.8 0.0 0.23 0.23 27 41 .. 208 222 .. 188 226 .. 0.83 Alignments for each domain: == domain 1 score: 67.4 bits; conditional E-value: 6.5e-23 CBM101.hmm 4 eikaGstlsvtveYdaGsgqtveedlggvavlLReldsswsvvndye.vvdasaigtq...sgtstvsitl.snippsaeLpaGnfY 85 ++ +G+ +++t++Y+ ++ d+++++v+L+e +s++ +vn+y + ++++++q s+++++++t+ sn+p++ LpaGn+Y QQY83579.1|CBM101|GH86 37 NFYPGQVINMTLSYS------TPGDFSYIQVILQEKNSANVIVNSYGsDYVRNENSGQqpdSDSFSTTYTIaSNAPTT--LPAGNYY 115 5678999*******8......789*********************99999988888887999*********999**99..******* PP CBM101.hmm 86 fLlvfmssdgdag 98 fL++fm++ +++g QQY83579.1|CBM101|GH86 116 FLHMFMWTVSNGG 128 ********97766 PP == domain 2 score: -1.8 bits; conditional E-value: 0.23 CBM101.hmm 27 edlggvavlLRelds 41 d gg+++ L ++d+ QQY83579.1|CBM101|GH86 208 RDTGGITYNLNQVDE 222 6899*******9997 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (854 residues searched) Target model(s): 1 (102 nodes) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 117.29 // [ok]