# hmmscan :: search sequence(s) against a profile database # HMMER 3.3.2 (Nov 2020); http://hmmer.org/ # Copyright (C) 2020 Howard Hughes Medical Institute. # Freely distributed under the BSD open source license. # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: /array2/siva/dbcansub_update/cazy2025/match_results/dbsub_data_2025/merged_clusters/AA1/fasta_for_each_cluster/cluster_81.txt # target HMM database: merged_hmms/AA1.hmm # per-dom hits tabular output: hmmscan_out/domain_result/AA1/AA1_cluster_81.out.dm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 2184572|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 [L=696] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.7e-94 303.0 9.0 2.8e-93 301.3 9.0 1.7 1 AA1.hmm 8.2e-71 226.8 10.7 8.2e-71 226.8 10.7 1.7 2 AA1_2.hmm 7.1e-68 217.1 0.6 7.1e-68 217.1 0.6 1.8 2 AA1_3.hmm 1.6e-61 196.1 0.3 1.6e-61 196.1 0.3 2.0 2 AA1_1.hmm Domain annotation for each model (and alignments): >> AA1.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 301.3 9.0 2.8e-93 2.8e-93 7 357 .. 136 658 .. 126 659 .. 0.79 Alignments for each domain: == domain 1 score: 301.3 bits; conditional E-value: 2.8e-93 AA1.hmm 7 versvilvNgqfPgPtieanegDtvvvtVtNklesegttiHwhGlrqlgtnw 58 + rsv+++N+qfPgPti +n+gD+v+++V N l +t++H+hG+ q+ +++ 2184572|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 136 YIRSVLTINNQFPGPTIIVNKGDKVRINVMNLL-GVPTSLHVHGIDQRINPF 186 679*****************************9.89**************** PP AA1.hmm 59 aDGvagvtqcpiapgksftYeftvteqaGtywyHsHvslqyadGlrGaliir 110 +DGv+++tqcpi+ g+sf+Y+f + ++Gtywy s +++q+ dGl+Ga+i++ 2184572|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 187 MDGVPYITQCPIENGSSFVYSFDAL-KSGTYWYYSSYETQRIDGLYGAFIVN 237 ************************9.************************** PP AA1.hmm 111 dpkskekydvddeelvillsdwyhktaeell......kenatgaepapdsll 156 dp +++ ++++ +e +illsdwyh++ +ell + n++ ep+p++++ 2184572|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 238 DPIDQTLFNYQ-KENIILLSDWYHNEGSELLnfyqfgNVNSSIIEPFPKNTI 288 **888877765.788***************99988775557889999***** PP AA1.hmm 157 inGkgrlync.........s.......sklevlkvepgktyrlrlinaalna 192 inGkg+++ c +++ + +ep+k+yrlr+in+++ + 2184572|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 289 INGKGVFN-CkkykfndsmRencdsylGSIKYFYFEPNKKYRLRIINTSAMT 339 *****976.54555554440445567766789******************** PP AA1.hmm 193 eltfsidnHkltvieaDgvyvkpye.vdslqiapGqrydvllk...anqsag 240 +++fsid+H l+++e++g+ +k + + + i+++qry+v+ + + s + 2184572|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 340 SFFFSIDGHILQIVEVEGTLTKLSKpYHRIPIHVAQRYSVIPTrlpKYMSIS 391 *********************9865489*************99665566669 PP AA1.hmm 241 nywiraslds...a.....afdnttalailrYkgassas............. 271 +++ir ++++ + + + + ail+Y++++s+ 2184572|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 392 SFMIRGEVNKnsfQssaldSEKLDDVIAILSYSTDDSEYpttvpwsyyenty 443 ******877766625666633567789*****88665558899999999999 PP AA1.hmm 272 .................................................... 271 2184572|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 444 ygtmnnfkledldsfelesltdeniptntilyemtmiisrfynfttdnvttn 495 9999999999*************99999999999999999999999988777 PP AA1.hmm 272 ....................nvsfvepstslleaysgv...........det 292 n v + t 2184572|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 496 nvttnnvttnnvttnsfttdN----------------VttdnvtnsvinNMT 531 666665555544433333331................122222222233111 PP AA1.hmm 293 ka...klkln.......................................... 299 ++ 2184572|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 532 NQninV---Fnqnslidgaiyssicsktrgiyvyqpnkttstikevlegnik 580 112221...1333444444444455555555555555556666666777788 PP AA1.hmm 300 ...hp...lhghdfvvv....nfd...........aedeakrdtvavpkggw 330 h hgh+f+v+ + + +++ krdtv++p+ gw 2184572|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 581 kfdHYwnaYHGHSFWVLdrgnE-StpynsskelsyKTNLIKRDTVTIPALGW 631 88844455*********87751.234444455555555555*********** PP AA1.hmm 331 vvirfvadnpgvwllhchieaHlsmGl 357 + ir++ +npg+w++ i++Hls+G+ 2184572|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 632 TLIRIRINNPGIWAFGNPIMWHLSTGM 658 **************************9 PP >> AA1_2.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 226.8 10.7 8.2e-71 8.2e-71 2 330 .. 138 509 .. 137 521 .. 0.82 2 ? -0.0 2.4 0.078 0.078 114 153 .. 476 528 .. 474 549 .. 0.70 Alignments for each domain: == domain 1 score: 226.8 bits; conditional E-value: 8.2e-71 AA1_2.hmm 2 rrvigvNgqwPlpeievnkgdrvevkltNgledentslHfHGlfqngtnamD 53 r+v+++N+q+P p+i vnkgd+v+++++N l +tslH+HG+ q+ + mD 2184572|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 138 RSVLTINNQFPGPTIIVNKGDKVRINVMNLL-GVPTSLHVHGIDQRINPFMD 188 899****************************.78****************** PP AA1_2.hmm 54 GasmvtqCpippgetltYeftveeqvGtYWyHsHskgqYeDGlrgpliiedk 105 G++ +tqCpi++g++++Y+f++ ++GtYWy s +++q +DGl g++i++d+ 2184572|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 189 GVPYITQCPIENGSSFVYSFDA-LKSGTYWYYSSYETQRIDGLYGAFIVNDP 239 **********************.9***************************7 PP AA1_2.hmm 106 e..epyeydeeltltlsdwYheeskelvke.flskynptgaepipdsllv.. 152 + ++y +e ++ lsdwYh+e +el++ + + n++ ep+p+++++ 2184572|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 240 IdqTLFNYQKENIILLSDWYHNEGSELLNFyQFGNVNSSIIEPFPKNTIIng 291 632666*********************997445679999************* PP AA1_2.hmm 153 .....................netenatlevepgktYllriinvgafasqyl 183 + + +ep+k+Y+lriin++a++s+++ 2184572|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 292 kgvfnckkykfndsmrencdsYLGSIKYFYFEPNKKYRLRIINTSAMTSFFF 343 ***********9999987765444556799********************** PP AA1_2.hmm 184 vledhemtivevDGvdvepse.vdslyiavaQRysvLvkaknd..tsknyal 232 ++++h ++ivev+G+ ++ s+ + + i vaQRysv+ + + + +++++ 2184572|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 344 SIDGHILQIVEVEGTLTKLSKpYHRIPIHVAQRYSVIPTRLPKymSISSFMI 395 *****************98765899***********998765533669**** PP AA1_2.hmm 233 vakmdetmldvvp..ddlqlnvtstlvydksaalaeas............tv 270 +++++ +++ + ++ v++ l+y+++ ++ ++ t+ 2184572|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 396 RGEVNKNSFQSSAldSEKLDDVIAILSYSTDDSEYPTTvpwsyyentyygTM 447 *********9554214444567889999988777766656665544433333 PP AA1_2.hmm 271 del..ealdDfkleplekeelleepdkeieldvemdnlkdg.vnyaffNnit 319 +++ e+ld f+le+l++ e +++ + +e+++ ++ + + ++ ++ Nn+t 2184572|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 448 NNFklEDLDSFELESLTD-ENIPTNTILYEMTMIISRFYNFtTDNVTTNNVT 498 443558889999999988.666666666666666655544324444555555 PP AA1_2.hmm 320 Yvapkvptllt 330 ++ ++ ++t 2184572|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 499 TNNVTTNNVTT 509 54444444444 PP == domain 2 score: -0.0 bits; conditional E-value: 0.078 AA1_2.hmm 114 eltltlsdwYheeskelvkeflskynptgaepipdsllv............. 152 e+t+++s +Y+ ++++++++ ++++n t+++ + +s+ 2184572|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 476 EMTMIISRFYNFTTDNVTTNNVTTNNVTTNNVTTNSFTTdnvttdnvtnsvi 527 7899999999999999999988888888888888887774433333333333 PP AA1_2.hmm 153 n 153 n 2184572|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 528 N 528 3 PP >> AA1_3.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 217.1 0.6 7.1e-68 7.1e-68 9 308 .. 115 439 .. 109 443 .. 0.88 2 ? -1.9 0.7 0.32 0.32 54 173 .. 522 540 .. 473 572 .. 0.54 Alignments for each domain: == domain 1 score: 217.1 bits; conditional E-value: 7.1e-68 AA1_3.hmm 9 ktgvtreytlevtestlapDGvekeallvngqyPgptieadWGDtlevtvkn 60 +t +++++l +++t +pDG+ +++l++n+q+Pgpti + GD+++++v+n 2184572|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 115 PTQDQKSFNLIFRNETRSPDGYIRSVLTINNQFPGPTIIVNKGDKVRINVMN 166 5778899********************************************* PP AA1_3.hmm 61 nlkknGtsiHwHGirqlntneqDGvpgvtqCpiapgesftYefratqyGtsw 112 l ts+H HGi q + +DGvp +tqCpi+ g+sf+Y+f a + Gt w 2184572|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 167 LLG-VPTSLHVHGIDQRINPFMDGVPYITQCPIENGSSFVYSFDALKSGTYW 217 887.78********************************************** PP AA1_3.hmm 113 YHsHyslQyadGvlGplvinGP.asanydvdl.gpllltdwshesafelvee 162 Y s y +Q dG++G+ ++n P ++ ++++ + +ll+dw+h++ +el++ 2184572|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 218 YYSSYETQRIDGLYGAFIVNDPiDQTLFNYQKeNIILLSDWYHNEGSELLNF 269 **********************5444566655267889*******9999988 PP AA1_3.hmm 163 ae.....asggppvadniLingknkvkkskk...........eeegeysevk 198 + +s +p +n++ingk++++++k + g+++ + 2184572|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 270 YQfgnvnSSIIEPFPKNTIINGKGVFNCKKYkfndsmrencdSYLGSIKYFY 321 8877765677789***************8889*****9998766889999** PP AA1_3.hmm 199 lekgkkyrlrlintsvdstfkfsidgHkltviaaDfvpie.pyttdslligi 249 +e++kkyrlr+ints+ ++f fsidgH l++++ + + + + i++ 2184572|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 322 FEPNKKYRLRIINTSAMTSFFFSIDGHILQIVEVEGTLTKlSKPYHRIPIHV 373 ********************************9986554413345789**** PP AA1_3.hmm 250 gqRydviveanqe...eenywlraelaeaCskln....aeekeikailrYee 294 +qRy vi + + +++ +r e++++ + + ++ ++ ail+Y++ 2184572|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 374 AQRYSVIPTRLPKymsISSFMIRGEVNKNSFQSSaldsEKLDDVIAILSYST 425 *******99999988899********9975443223347778999******* PP AA1_3.hmm 295 assaeptskateis 308 ++s+ pt+ ++++ 2184572|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 426 DDSEYPTTVPWSYY 439 ********998775 PP == domain 2 score: -1.9 bits; conditional E-value: 0.32 AA1_3.hmm 54 levtvknnlkknGtsiHwHGirqlntneqDGvpgvtqCpiapgesftYefra 105 + 2184572|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 522 V--------------------------------------------------- 522 1................................................... PP AA1_3.hmm 106 tqyGtswYHsHyslQyadGvlGplvinGPasanydvdlgpllltdwshesaf 157 ++ 2184572|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 523 --------------------------------------------------TN 524 ..................................................12 PP AA1_3.hmm 158 elveeaeasggppvad 173 ++++++++++ ++ + 2184572|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 525 SVINNMTNQNINVFNQ 540 2222222334444444 PP >> AA1_1.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 196.1 0.3 1.6e-61 1.6e-61 2 280 .. 132 435 .. 131 470 .. 0.84 2 ? -1.6 0.6 0.25 0.25 24 43 .. 516 535 .. 479 578 .. 0.57 Alignments for each domain: == domain 1 score: 196.1 bits; conditional E-value: 1.6e-61 AA1_1.hmm 2 spDGfsrsavlvngtfpgplitgkkgdkfkinvvneLtdetmlkstsihwhg 53 spDG+ rs+ ++n++fpgp i +kgdk++inv+n L ts+h hg 2184572|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 132 SPDGYIRSVLTINNQFPGPTIIVNKGDKVRINVMNLLG-----VPTSLHVHG 178 7**********************************986.....579****** PP AA1_1.hmm 54 lfqkgtnwadgpafvtqCPiapgnsflydfkvpdqaGtfwYHshlstqycdg 105 + q+ + ++dg+ +tqCPi +g+sf+y+f++ ++Gt+wY s ++tq +dg 2184572|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 179 IDQRINPFMDGVPYITQCPIENGSSFVYSFDA-LKSGTYWYYSSYETQRIDG 229 *******************************9.689**************** PP AA1_1.hmm 106 lrGalvvydpedplkslydvddestvitladwyhtaakell........... 146 l Ga++v dp d + y+ ++ +i l+dwyh++ +ell 2184572|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 230 LYGAFIVNDPIDQTLFNYQ---KENIILLSDWYHNEGSELLnfyqfgnvnss 278 ***********98777774...456999********9999889999998876 PP AA1_1.hmm 147 klvavadstlinGlgryagg..............peaelavvnvekgkrYrf 184 + + ++ t+inG+g ++ + ++ e +k+Yr+ 2184572|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 279 IIEPFPKNTIINGKGVFNCKkykfndsmrencdsYLGSIKYFYFEPNKKYRL 330 66799**********9885445555666544222222345566899****** PP AA1_1.hmm 185 rlvsiscdpnftfsidghnltvieadgvntk.pltvdsiqifagqrysvv.. 233 r++++s+ ++f fsidgh l+++e++g+ tk + ++i i ++qrysv+ 2184572|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 331 RIINTSAMTSFFFSIDGHILQIVEVEGTLTKlSKPYHRIPIHVAQRYSVIpt 382 ***************************9988355689************966 PP AA1_1.hmm 234 .leanqevdnYwiranpnlgk.....ntgfegginsailrykgapeaePttk 279 l +++ + ir + n ++ + + + ail y++ +++ Ptt 2184572|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 383 rLPKYMSISSFMIRGEVNKNSfqssaLDSEKLDDVIAILSYSTDDSEYPTTV 434 666778899*******99988765433333445567***********9*997 PP AA1_1.hmm 280 q 280 2184572|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 435 P 435 5 PP == domain 2 score: -1.6 bits; conditional E-value: 0.25 AA1_1.hmm 24 gkkgdkfkinvvneLtdetm 43 + d+++ +v+n++t++++ 2184572|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 516 NVTTDNVTNSVINNMTNQNI 535 22334444444444444433 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (696 residues searched) Target model(s): 4 (1310 nodes) Passed MSV filter: 4 (1); expected 0.1 (0.02) Passed bias filter: 4 (1); expected 0.1 (0.02) Passed Vit filter: 4 (1); expected 0.0 (0.001) Passed Fwd filter: 4 (1); expected 0.0 (1e-05) Initial search space (Z): 4 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 53.40 // Query: 754988|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 [L=707] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.9e-102 330.5 0.6 6e-102 329.9 0.6 1.2 1 AA1.hmm 8.3e-79 253.0 1.6 1.4e-78 252.4 1.6 1.3 1 AA1_2.hmm 1.5e-75 242.3 0.2 2.2e-75 241.7 0.2 1.2 1 AA1_3.hmm 2.1e-65 208.9 0.0 2.9e-65 208.4 0.0 1.1 1 AA1_1.hmm Domain annotation for each model (and alignments): >> AA1.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 329.9 0.6 6e-102 6e-102 7 357 .. 155 650 .. 144 651 .. 0.76 Alignments for each domain: == domain 1 score: 329.9 bits; conditional E-value: 6e-102 AA1.hmm 7 versvilvNgqfPgPtieanegDtvvvtVtNklesegttiHwhGlrqlgtnwa 59 + rs++++N+qfPgP i +++gDtv+++++N + ++ttiH+hG+ ++t ++ 754988|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 155 FIRSIYTINNQFPGPEIIVDKGDTVRINIKNYI-GRPTTIHVHGMIHKETVYM 206 789*****************************9.89***************** PP AA1.hmm 60 DGvagvtqcpiapgksftYeftvteqaGtywyHsHvslqyadGlrGaliirdp 112 DGv++vtqcpi+ g+sf Yef++t Gtywy sH+++q+adGl+G++i++dp 754988|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 207 DGVPYVTQCPIQNGSSFIYEFEAT-HPGTYWYYSHYETQRADGLYGSFIVKDP 258 ***********************9.**************************** PP AA1.hmm 113 kskekydvddeelvillsdwyhktaeell.....kenatgaepapdsllinGk 160 ++++ y++d +e++i+lsdwyh++++ ll ++n++ ep p+s+linGk 754988|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 259 DESRYYNYD-DEKTIFLSDWYHDESSILLknyryNNNTSIFEPIPNSGLINGK 310 888889988.556***********99888766544345555667********* PP AA1.hmm 161 grlync........s.....sklevlkvepgktyrlrlinaalnaeltfsidn 200 g ++ c s ++e++ +ep+k+ rlr+in+++ +++++sid+ 754988|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 311 GIFN-CmddpikkeScnfesLSVEEFYFEPNKKNRLRIINTSAMSSFYLSIDE 362 *975.54666655414464455679**************************** PP AA1.hmm 201 HkltvieaDgvyvkp.yevdslqiapGqrydvl.lk..anqsagnywirasld 249 H l+vie+Dgv+++p + + l i++Gqry+++ ++ + +s+ n+++ra+++ 754988|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 363 HMLQVIEIDGVPTTPsSKFHRLPIHVGQRYSIIpIRlpQYTSTLNFYLRAEFA 415 ***************4468*************954453555556******998 PP AA1.hmm 250 s...a........afdnttalailrYkgassas.................... 271 + ++ t+ +ai+rY+++++ + 754988|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 416 KksfRstspystsNLFPTELRAIIRYSKKENDKslpstlswtlqqsslmfpli 468 87661567787776667899******887666678886666666666666666 PP AA1.hmm 272 ..............................................nvsfvep 278 + 754988|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 469 dlnpldlksysqeilpknmtyyqfdfviekineqktlnfnhkgfndD------ 515 66666666655555555555543333333333333333322222220...... PP AA1.hmm 279 stslleaysgvdetkaklkln................................ 299 754988|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 516 --------------------Ielfygsinsvhrgvsiynpdkrtntlkllleg 548 ....................022233333333333344444444444444445 PP AA1.hmm 300 ...............................hp..lhghdfvvv....nfd.. 313 + lhgh+f+v+ n++ 754988|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 549 kikyfpfylniyvfkrkstidlllknydgldQVfyLHGHKFWVLgqgtNSTpe 601 55555777777777888888888999999975579*********876522243 PP AA1.hmm 314 aedeak.........rdtvavpkggwvvirfvadnpgvwllhchieaHlsmGl 357 + rdtv+vp+ gw+ i+f+ dnpg+w + i +H ++G+ 754988|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 602 H----SdlnyfnpikRDTVVVPSLGWTLIKFTLDNPGIWTFSNPIVWHQNIGM 650 1....1334455666*************************************9 PP >> AA1_2.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 252.4 1.6 1.4e-78 1.4e-78 2 320 .. 157 512 .. 156 517 .. 0.85 Alignments for each domain: == domain 1 score: 252.4 bits; conditional E-value: 1.4e-78 AA1_2.hmm 2 rrvigvNgqwPlpeievnkgdrvevkltNgledentslHfHGlfqngtnamDG 54 r++ ++N+q+P pei v+kgd+v+++++N + ++t++H+HG+ +++t +mDG 754988|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 157 RSIYTINNQFPGPEIIVDKGDTVRINIKNYI-GRPTTIHVHGMIHKETVYMDG 208 67889**************************.78******************* PP AA1_2.hmm 55 asmvtqCpippgetltYeftveeqvGtYWyHsHskgqYeDGlrgpliiedke. 106 ++ vtqCpi++g++++Yef++ + GtYWy sH+++q DGl g++i++d++ 754988|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 209 VPYVTQCPIQNGSSFIYEFEA-THPGTYWYYSHYETQRADGLYGSFIVKDPDe 260 *********************.9***************************985 PP AA1_2.hmm 107 .epyeydeeltltlsdwYheeskelvkeflskynptgaepipdsllv...... 152 y+yd+e t+ lsdwYh+es+ l+k++ ++n++ epip+s l+ 754988|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 261 sRYYNYDDEKTIFLSDWYHDESSILLKNYRYNNNTSIFEPIPNSGLIngkgif 313 4556************************************************* PP AA1_2.hmm 153 ..............netenatlevepgktYllriinvgafasqylvledhemt 191 ++ + ++ +ep+k+ +lriin++a++s+yl++++h ++ 754988|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 314 ncmddpikkescnfESLSVEEFYFEPNKKNRLRIINTSAMSSFYLSIDEHMLQ 366 ***********9766667889******************************** PP AA1_2.hmm 192 ivevDGvdvepse.vdslyiavaQRysvL.vkaknd.tsknyalvakmdetml 241 ++e+DGv ++ps+ + l i v+QRys++ ++ + ++ n+ l a++ ++ + 754988|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 367 VIEIDGVPTTPSSkFHRLPIHVGQRYSIIpIRLPQYtSTLNFYLRAEFAKKSF 419 ********999875899**********9867766652669************* PP AA1_2.hmm 242 d.....vvpddlqlnvtstlvydksaalaeas.....tvdel......ealdD 278 ++ + + ++ + ++y+k+++ ++ t+++ +l+ 754988|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 420 RstspySTSNLFPTELRAIIRYSKKENDKSLPstlswTLQQSslmfplIDLNP 472 95444323334455667889999888777666444442332233444455666 PP AA1_2.hmm 279 fkleplekeelleepdkeieldvemdnlkdgvnyaffNnitY 320 ++l+++++ e+l++ + +++d+ ++++++ + fN+ + 754988|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 473 LDLKSYSQ-EILPKNMTYYQFDFVIEKINE-QKTLNFNHKGF 512 67777777.777777888888888877655.44555666555 PP >> AA1_3.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 241.7 0.2 2.2e-75 2.2e-75 10 309 .. 135 460 .. 124 463 .. 0.86 Alignments for each domain: == domain 1 score: 241.7 bits; conditional E-value: 2.2e-75 AA1_3.hmm 10 tgvtreytlevtestlapDGvekeallvngqyPgptieadWGDtlevtvknnl 62 + ++++l ++++t +pDG+ +++ ++n+q+Pgp i d GDt+++++kn + 754988|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 135 IKNYKTFDLVLRNETKSPDGFIRSIYTINNQFPGPEIIVDKGDTVRINIKNYI 187 4567899********************************************99 PP AA1_3.hmm 63 kknGtsiHwHGirqlntneqDGvpgvtqCpiapgesftYefratqyGtswYHs 115 + t+iH HG+ +++t +DGvp vtqCpi+ g+sf Yef+at+ Gt wY s 754988|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 188 G-RPTTIHVHGMIHKETVYMDGVPYVTQCPIQNGSSFIYEFEATHPGTYWYYS 239 8.6899*********************************************** PP AA1_3.hmm 116 HyslQyadGvlGplvinGPasan.ydvd.lgpllltdwshesafelveeae.. 164 Hy +Q adG++G+ +++ P ++ y++d ++++l+dw+h++ + l+++ + 754988|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 240 HYETQRADGLYGSFIVKDPDESRyYNYDdEKTIFLSDWYHDESSILLKNYRyn 292 *******************76541455415899*********99999888865 PP AA1_3.hmm 165 ..asggppvadniLingknkvkkskk........eeegeysevklekgkkyrl 207 +s +p+ +++Lingk+ +++ e+ + e+ +e++kk rl 754988|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 293 nnTSIFEPIPNSGLINGKGIFNCMDDpikkescnFESLSVEEFYFEPNKKNRL 345 444555699**************8879999888766778899*********** PP AA1_3.hmm 208 rlintsvdstfkfsidgHkltviaaDfvpiepytt.dslligigqRydvi.ve 258 r+ints+ s+f +sid+H l+vi+ D vp +p ++ + l i++gqRy +i + 754988|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 346 RIINTSAMSSFYLSIDEHMLQVIEIDGVPTTPSSKfHRLPIHVGQRYSIIpI- 397 ********************************865499***********954. PP AA1_3.hmm 259 anqe...eenywlraelaea.......CsklnaeekeikailrYeeass..ae 299 + + n++lrae+a++ s+ n +e +ai+rY+++++ + 754988|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 398 RLPQytsTLNFYLRAEFAKKsfrstspYSTSNLFPTELRAIIRYSKKENdkSL 450 444446799********996322111122224667899******998875466 PP AA1_3.hmm 300 ptskateisk 309 p++ +++ ++ 754988|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 451 PSTLSWTLQQ 460 8887777665 PP >> AA1_1.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 208.4 0.0 2.9e-65 2.9e-65 2 273 .. 151 446 .. 150 477 .. 0.83 Alignments for each domain: == domain 1 score: 208.4 bits; conditional E-value: 2.9e-65 AA1_1.hmm 2 spDGfsrsavlvngtfpgplitgkkgdkfkinvvneLtdetmlkstsihwhgl 54 spDGf rs ++n++fpgp i kgd+++in++n + + t+ih hg+ 754988|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 151 SPDGFIRSIYTINNQFPGPEIIVDKGDTVRINIKNYI-----GRPTTIHVHGM 198 7********************************9976.....6889******* PP AA1_1.hmm 55 fqkgtnwadgpafvtqCPiapgnsflydfkvpdqaGtfwYHshlstqycdglr 107 + k+t ++dg+ vtqCPi++g+sf y+f++ + Gt+wY sh++tq dgl 754988|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 199 IHKETVYMDGVPYVTQCPIQNGSSFIYEFEA-THPGTYWYYSHYETQRADGLY 250 ******************************9.789****************** PP AA1_1.hmm 108 Galvvydpedplkslydvddestvitladwyhtaakell..........klva 150 G+++v dp++ + y+ dde+t+ l+dwyh +++ ll + + 754988|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 251 GSFIVKDPDES--RYYNYDDEKTI-FLSDWYHDESSILLknyrynnntsIFEP 300 *****999875..678889**997.69*******9998888999988766679 PP AA1_1.hmm 151 vadstlinGlgrya..gg....peaelavvnvek.....gkrYrfrlvsiscd 192 +++s+linG+g ++ ++ ++ ++ ++ve+ +k+ r+r++++s+ 754988|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 301 IPNSGLINGKGIFNcmDDpikkESCNFESLSVEEfyfepNKKNRLRIINTSAM 353 ***********99854224433555666676653233339************* PP AA1_1.hmm 193 pnftfsidghnltvieadgvntkpl.tvdsiqifagqrysvv...leanqevd 241 ++f +sid+h l+vie+dgv t+p + +++ i +gqrys++ l ++ 754988|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 354 SSFYLSIDEHMLQVIEIDGVPTTPSsKFHRLPIHVGQRYSIIpirLPQYTSTL 406 **********************9962689************974555556677 PP AA1_1.hmm 242 nYwiranpnlgk........ntgfegginsailrykgape 273 n+++ra+ + ++ ++++ + +ai+ry+ ++ 754988|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 407 NFYLRAEFAKKSfrstspysTSNLFPTELRAIIRYSKKEN 446 ******9988877777777666666777899999965443 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (707 residues searched) Target model(s): 4 (1310 nodes) Passed MSV filter: 4 (1); expected 0.1 (0.02) Passed bias filter: 4 (1); expected 0.1 (0.02) Passed Vit filter: 4 (1); expected 0.0 (0.001) Passed Fwd filter: 4 (1); expected 0.0 (1e-05) Initial search space (Z): 4 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: 114.37 // Query: 453219|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 [L=709] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.3e-103 332.9 0.9 1.2e-102 332.1 0.9 1.3 1 AA1.hmm 8.2e-80 256.4 2.1 1.4e-79 255.6 2.1 1.3 1 AA1_2.hmm 1.1e-76 246.0 0.4 1.7e-76 245.4 0.4 1.2 1 AA1_3.hmm 2e-66 212.2 0.1 2.8e-66 211.7 0.1 1.1 1 AA1_1.hmm Domain annotation for each model (and alignments): >> AA1.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 332.1 0.9 1.2e-102 1.2e-102 7 357 .. 157 652 .. 146 653 .. 0.75 Alignments for each domain: == domain 1 score: 332.1 bits; conditional E-value: 1.2e-102 AA1.hmm 7 versvilvNgqfPgPtieanegDtvvvtVtNklesegttiHwhGlrqlgtnw 58 + r+++++N+qfPgP i +++gDtv++++tN + ++ttiH+hG+ ++t + 453219|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 157 FIRNIYTINNQFPGPEIIVDKGDTVRINITNYI-GRSTTIHVHGMIHKETVY 207 789*****************************9.89**************** PP AA1.hmm 59 aDGvagvtqcpiapgksftYeftvteqaGtywyHsHvslqyadGlrGaliir 110 +DGv++vtqcpi+ g+sf Yef++t Gtywy sH+++q+adGl+G+li++ 453219|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 208 MDGVPYVTQCPIQNGSSFIYEFEAT-HPGTYWYYSHYETQRADGLYGSLIVK 258 ************************9.************************** PP AA1.hmm 111 dpkskekydvddeelvillsdwyhktaeell.....kenatgaepapdslli 157 dp++++ y++d +e++i+lsdwyh++++ ll ++n++ ep p+s+li 453219|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 259 DPDESRYYNYD-DEKTIFLSDWYHDESSILLknyryNNNTSIFEPIPNSGLI 309 **888889988.556***********99888766544345555667****** PP AA1.hmm 158 nGkgrlync..........s...sklevlkvepgktyrlrlinaalnaeltf 196 nGkg ++ c + ++e++ +ep+k+ rlr+in+++ +++++ 453219|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 310 NGKGIFN-CmddpikkencNfesLSVEEFYFEPNKKNRLRIINTSAMTSFYL 360 ****976.54655554433254455679************************ PP AA1.hmm 197 sidnHkltvieaDgvyvkp.yevdslqiapGqrydvl.lk..anqsagnywi 244 sid+H l+vie+Dgv+++p + + l i++Gqry+++ ++ + +s+ n+++ 453219|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 361 SIDEHMLQVIEVDGVPTTPsSKFHRLPIHVGQRYSIIpIRlpQYTSTLNFYL 412 *******************4468*************954453555556**** PP AA1.hmm 245 raslds...a........afdnttalailrYkgassas.............. 271 ra++++ ++ t+ +ai+rY+++++ + 453219|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 413 RAEFAKksfRstspystsNLFPTELRAIIRYSKKENDKslpstlswtlqqss 464 **99887661567787776667899******887666677886666666665 PP AA1.hmm 272 ..................................................nv 273 n 453219|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 465 lmfplidlnpldlkpysqeilpenttyyefdfiiekineqktlnfnhkgfN- 515 666666666555555555555554444433333333333333333333330. PP AA1.hmm 274 sfvepstslleaysgvdetkaklkln.......................... 299 453219|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 516 -------------------------Ddielfygsinsvhrgvsiynpdkrtn 542 .........................033333333333344444444444444 PP AA1.hmm 300 .......................................hp..lhghdfvvv 310 + lhgh+f+v+ 453219|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 543 tlklllegkikffpfyliiyvfkrkltidlllknnddldQIfyLHGHKFWVL 594 4444455555555666777777777777788888898875589********* PP AA1.hmm 311 ....nfd.......aedeakrdtvavpkggwvvirfvadnpgvwllhchiea 351 n++ ++ krdtv+vp++gw+ i+f+ dnpg+w + i + 453219|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 595 gqgtNSTpvhsdlnYFNPIKRDTVTVPSSGWTLIKFTLDNPGIWTFSNPIVW 646 98663335533343555555******************************** PP AA1.hmm 352 HlsmGl 357 H ++G+ 453219|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 647 HQNIGM 652 *****9 PP >> AA1_2.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 255.6 2.1 1.4e-79 1.4e-79 2 320 .. 159 514 .. 158 519 .. 0.87 Alignments for each domain: == domain 1 score: 255.6 bits; conditional E-value: 1.4e-79 AA1_2.hmm 2 rrvigvNgqwPlpeievnkgdrvevkltNgledentslHfHGlfqngtnamD 53 r++ ++N+q+P pei v+kgd+v++++tN + ++t++H+HG+ +++t +mD 453219|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 159 RNIYTINNQFPGPEIIVDKGDTVRINITNYI-GRSTTIHVHGMIHKETVYMD 209 67889**************************.689***************** PP AA1_2.hmm 54 GasmvtqCpippgetltYeftveeqvGtYWyHsHskgqYeDGlrgpliiedk 105 G++ vtqCpi++g++++Yef++ + GtYWy sH+++q DGl g+li++d+ 453219|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 210 GVPYVTQCPIQNGSSFIYEFEA-THPGTYWYYSHYETQRADGLYGSLIVKDP 260 **********************.9***************************9 PP AA1_2.hmm 106 e..epyeydeeltltlsdwYheeskelvkeflskynptgaepipdsllv... 152 + y+yd+e t+ lsdwYh+es+ l+k++ ++n++ epip+s l+ 453219|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 261 DesRYYNYDDEKTIFLSDWYHDESSILLKNYRYNNNTSIFEPIPNSGLIngk 312 854556********************************************** PP AA1_2.hmm 153 .................netenatlevepgktYllriinvgafasqylvled 187 ++ + ++ +ep+k+ +lriin++a++s+yl++++ 453219|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 313 gifncmddpikkencnfESLSVEEFYFEPNKKNRLRIINTSAMTSFYLSIDE 364 ************9997666677899*************************** PP AA1_2.hmm 188 hemtivevDGvdvepse.vdslyiavaQRysvL.vkaknd.tsknyalvakm 236 h ++++evDGv ++ps+ + l i v+QRys++ ++ + ++ n+ l a++ 453219|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 365 HMLQVIEVDGVPTTPSSkFHRLPIHVGQRYSIIpIRLPQYtSTLNFYLRAEF 416 ************999875899**********9867766652669******** PP AA1_2.hmm 237 detmld.....vvpddlqlnvtstlvydksaalaeas.....tvdel..... 273 ++ + ++ + + ++ + ++y+k+++ ++ t+++ 453219|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 417 AKKSFRstspySTSNLFPTELRAIIRYSKKENDKSLPstlswTLQQSslmfp 468 *****95444333334455667889999888777666444543332234555 PP AA1_2.hmm 274 .ealdDfkleplekeelleepdkeieldvemdnlkdgvnyaffNnitY 320 +l+ ++l+p+++ e+l+e ++ +e+d+ ++++++ + fN+ + 453219|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 469 lIDLNPLDLKPYSQ-EILPENTTYYEFDFIIEKINE-QKTLNFNHKGF 514 578889999**999.9999999*******9988766.45566776655 PP >> AA1_3.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 245.4 0.4 1.7e-76 1.7e-76 10 309 .. 137 462 .. 126 465 .. 0.85 Alignments for each domain: == domain 1 score: 245.4 bits; conditional E-value: 1.7e-76 AA1_3.hmm 10 tgvtreytlevtestlapDGvekeallvngqyPgptieadWGDtlevtvknn 61 + ++++l ++++t +pDG+ +++ ++n+q+Pgp i d GDt++++++n 453219|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 137 IKNYKTFNLVLRNETKSPDGFIRNIYTINNQFPGPEIIVDKGDTVRINITNY 188 4567899********************************************9 PP AA1_3.hmm 62 lkknGtsiHwHGirqlntneqDGvpgvtqCpiapgesftYefratqyGtswY 113 + + t+iH HG+ +++t +DGvp vtqCpi+ g+sf Yef+at+ Gt wY 453219|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 189 IG-RSTTIHVHGMIHKETVYMDGVPYVTQCPIQNGSSFIYEFEATHPGTYWY 239 97.6899********************************************* PP AA1_3.hmm 114 HsHyslQyadGvlGplvinGPasan.ydvd.lgpllltdwshesafelveea 163 sHy +Q adG++G+l+++ P ++ y++d ++++l+dw+h++ + l+++ 453219|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 240 YSHYETQRADGLYGSLIVKDPDESRyYNYDdEKTIFLSDWYHDESSILLKNY 291 *********************76541455415899*********99999888 PP AA1_3.hmm 164 e....asggppvadniLingknkvkkskk........eeegeysevklekgk 203 + +s +p+ +++Lingk+ +++ e+ + e+ +e++k 453219|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 292 RynnnTSIFEPIPNSGLINGKGIFNCMDDpikkencnFESLSVEEFYFEPNK 343 865444555699**************8879999887656778889******* PP AA1_3.hmm 204 kyrlrlintsvdstfkfsidgHkltviaaDfvpiepytt.dslligigqRyd 254 k rlr+ints+ ++f +sid+H l+vi+ D vp +p ++ + l i++gqRy 453219|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 344 KNRLRIINTSAMTSFYLSIDEHMLQVIEVDGVPTTPSSKfHRLPIHVGQRYS 395 ************************************865499********** PP AA1_3.hmm 255 vi.veanqe...eenywlraelaea.......CsklnaeekeikailrYeea 295 +i + + + n++lrae+a++ s+ n +e +ai+rY+++ 453219|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 396 IIpI-RLPQytsTLNFYLRAEFAKKsfrstspYSTSNLFPTELRAIIRYSKK 446 *954.444446799********996322111122224667899******998 PP AA1_3.hmm 296 ss..aeptskateisk 309 ++ + p++ +++ ++ 453219|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 447 ENdkSLPSTLSWTLQQ 462 8754668887777665 PP >> AA1_1.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 211.7 0.1 2.8e-66 2.8e-66 2 274 .. 153 449 .. 152 487 .. 0.83 Alignments for each domain: == domain 1 score: 211.7 bits; conditional E-value: 2.8e-66 AA1_1.hmm 2 spDGfsrsavlvngtfpgplitgkkgdkfkinvvneLtdetmlkstsihwhg 53 spDGf r+ ++n++fpgp i kgd+++in++n + +st+ih hg 453219|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 153 SPDGFIRNIYTINNQFPGPEIIVDKGDTVRINITNYI-----GRSTTIHVHG 199 7********************************9975.....699******* PP AA1_1.hmm 54 lfqkgtnwadgpafvtqCPiapgnsflydfkvpdqaGtfwYHshlstqycdg 105 ++ k+t ++dg+ vtqCPi++g+sf y+f++ + Gt+wY sh++tq dg 453219|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 200 MIHKETVYMDGVPYVTQCPIQNGSSFIYEFEA-THPGTYWYYSHYETQRADG 250 *******************************9.789**************** PP AA1_1.hmm 106 lrGalvvydpedplkslydvddestvitladwyhtaakell..........k 147 l G+l+v dp++ + y+ dde+t+ l+dwyh +++ ll 453219|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 251 LYGSLIVKDPDES--RYYNYDDEKTI-FLSDWYHDESSILLknyrynnntsI 299 *******999875..678889**997.69*******9998888999988766 PP AA1_1.hmm 148 lvavadstlinGlgrya..gg....peaelavvnvek.....gkrYrfrlvs 188 + ++++s+linG+g ++ ++ ++ ++ ++ve+ +k+ r+r+++ 453219|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 300 FEPIPNSGLINGKGIFNcmDDpikkENCNFESLSVEEfyfepNKKNRLRIIN 351 679***********99854224433566677777754333339********* PP AA1_1.hmm 189 iscdpnftfsidghnltvieadgvntkpl.tvdsiqifagqrysvv...lea 236 +s+ ++f +sid+h l+vie+dgv t+p + +++ i +gqrys++ l 453219|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 352 TSAMTSFYLSIDEHMLQVIEVDGVPTTPSsKFHRLPIHVGQRYSIIpirLPQ 403 **************************9962689************9745555 PP AA1_1.hmm 237 nqevdnYwiranpnlgk........ntgfegginsailrykgapea 274 ++ n+++ra+ + ++ ++++ + +ai+ry+ ++ 453219|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 404 YTSTLNFYLRAEFAKKSfrstspysTSNLFPTELRAIIRYSKKEND 449 56677******99888877777776666667778999999755433 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (709 residues searched) Target model(s): 4 (1310 nodes) Passed MSV filter: 4 (1); expected 0.1 (0.02) Passed bias filter: 4 (1); expected 0.1 (0.02) Passed Vit filter: 4 (1); expected 0.0 (0.001) Passed Fwd filter: 4 (1); expected 0.0 (1e-05) Initial search space (Z): 4 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: 113.09 // Query: 835060|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 [L=726] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-99 322.4 1.4 1.7e-99 321.8 1.4 1.2 1 AA1.hmm 1.1e-76 246.0 2.7 1.9e-76 245.3 2.7 1.3 1 AA1_2.hmm 9e-74 236.5 1.1 1.6e-73 235.7 1.1 1.3 1 AA1_3.hmm 3.5e-63 201.5 0.1 5.3e-63 200.9 0.1 1.2 1 AA1_1.hmm Domain annotation for each model (and alignments): >> AA1.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 321.8 1.4 1.7e-99 1.7e-99 7 357 .. 168 670 .. 157 671 .. 0.76 Alignments for each domain: == domain 1 score: 321.8 bits; conditional E-value: 1.7e-99 AA1.hmm 7 versvilvNgqfPgPtieanegDtvvvtVtNklesegttiHwhGlrqlgtn 57 ++r ++++N+qfPgP i +++gD ++++VtN + ++tt H+hG+ ++t 835060|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 168 FSRYIYTINNQFPGPEIIVDKGDMIRINVTNYI-GHPTTFHVHGMIHKETV 217 7899****************************9.89*************** PP AA1.hmm 58 waDGvagvtqcpiapgksftYeftvteqaGtywyHsHvslqyadGlrGali 108 ++DGv++vtqcpi+ g+sftYef++t Gtywy sH+++q+adGl+G+li 835060|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 218 YMDGVPYVTQCPIQNGSSFTYEFEAT-HPGTYWYYSHYETQRADGLYGSLI 267 *************************9.************************ PP AA1.hmm 109 irdpkskekydvddeelvillsdwyhktaeell.....kenatgaepapds 154 ++d+++++ y++d +e++illsdwyh+++ ll ++n++ ep p+s 835060|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 268 VKDSEESKYYNYD-DEKTILLSDWYHDESLMLLknyqySSNSSIFEPVPNS 317 **88777788888.556***********99999766554445666777*** PP AA1.hmm 155 llinGkgrlync.............s...sklevlkvepgktyrlrlinaa 189 +linGkg + c + +e++ +ep k+ r+r+in++ 835060|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 318 GLINGKGIFD-CvkydddpikkekcNsesLIIEEIYFEPHKKNRIRVINTS 367 *******975.55666665554433243222569***************** PP AA1.hmm 190 lnaeltfsidnHkltvieaDgvyvkp.yevdslqiapGqrydvl.lk..an 236 + +++++sid+H l+vie+Dg+++ p + + l i++Gqry+++ ++ ++ 835060|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 368 AMTSFYLSIDGHMLQVIEVDGTPTIPsSKFHRLPIHVGQRYSIIpIRlpQH 418 **************************4568*************96445477 PP AA1.hmm 237 qsagnywira.slds...a........afdnttalailrYkgassas.... 271 +s++n+++ra +++ + + + +ai+rY+++++++ 835060|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 419 ESTSNFYLRAeIIKKlfrSttpyymldS-LPLELKAIIRYNDKENNTslps 468 7779******555557761567887843.567889*****99776667888 PP AA1.hmm 272 ................................................... 271 835060|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 469 tlswtlqqtslifplidlnpldlksyfqenlpqnmtfyqfdlvidkfneqk 519 777777777777777777777776666666666555555555555555555 PP AA1.hmm 272 ...............nvsfvepstslleaysgvdetkaklkln........ 299 n 835060|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 520 slkfshkgfddndidN--------------------------Leyfygsin 544 5544433333333331..........................022222333 PP AA1.hmm 300 ................................................... 299 835060|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 545 svqrgasiynpnentntlrlllegrmksfplylniyvfkrrlnidfllnny 595 333333333333333344444445555555556666667777778888899 PP AA1.hmm 300 ....hp..lhghdfvvv........nfd...aedeakrdtvavpkggwvvi 333 + lhgh+f+v+ n++ ++ krdtv+vp+ gw+ i 835060|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 596 ddfdQVfyLHGHKFWVLgqgtnsspNYSdlnYVNPIKRDTVVVPSLGWTLI 646 98875579*********98765444222444555666************** PP AA1.hmm 334 rfvadnpgvwllhchieaHlsmGl 357 +f+ dnpg+w + i +H ++G+ 835060|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 647 KFNIDNPGIWTFSNPIVWHQNIGM 670 ***********************9 PP >> AA1_2.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 245.3 2.7 1.9e-76 1.9e-76 2 285 .. 170 490 .. 169 526 .. 0.84 Alignments for each domain: == domain 1 score: 245.3 bits; conditional E-value: 1.9e-76 AA1_2.hmm 2 rrvigvNgqwPlpeievnkgdrvevkltNgledentslHfHGlfqngtnam 52 r + ++N+q+P pei v+kgd +++++tN + ++t++H+HG+ +++t +m 835060|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 170 RYIYTINNQFPGPEIIVDKGDMIRINVTNYI-GHPTTFHVHGMIHKETVYM 219 66789**************************.67***************** PP AA1_2.hmm 53 DGasmvtqCpippgetltYeftveeqvGtYWyHsHskgqYeDGlrgpliie 103 DG++ vtqCpi++g+++tYef++ + GtYWy sH+++q DGl g+li++ 835060|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 220 DGVPYVTQCPIQNGSSFTYEFEA-THPGTYWYYSHYETQRADGLYGSLIVK 269 ***********************.9************************** PP AA1_2.hmm 104 dke..epyeydeeltltlsdwYheeskelvkeflskynptgaepipdsllv 152 d+e + y+yd+e t+ lsdwYh+es l+k++ +n++ ep+p+s l+ 835060|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 270 DSEesKYYNYDDEKTILLSDWYHDESLMLLKNYQYSSNSSIFEPVPNSGLI 320 *8854566******************************************* PP AA1_2.hmm 153 .......................netenatlevepgktYllriinvgafas 180 ++ ++ +ep k+ ++r+in++a++s 835060|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 321 ngkgifdcvkydddpikkekcnsESLIIEEIYFEPHKKNRIRVINTSAMTS 371 *****************999754344456899******************* PP AA1_2.hmm 181 qylvledhemtivevDGvdvepse.vdslyiavaQRysvL.vkakn.dtsk 228 +yl++++h ++++evDG+ + ps+ + l i v+QRys++ ++ + ++++ 835060|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 372 FYLSIDGHMLQVIEVDGTPTIPSSkFHRLPIHVGQRYSIIpIRLPQhESTS 422 ******************9887764899**********986665541688* PP AA1_2.hmm 229 nyalvakmdetmld.....vvpddlqlnvtstlvydksaalaeas.....t 269 n+ l a++ ++++ + d+l l+ + ++y++++++++ t 835060|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 423 NFYLRAEIIKKLFRsttpyYMLDSLPLELKAIIRYNDKENNTSLPstlswT 473 ************99766666679999**********999888776333332 PP AA1_2.hmm 270 vdel.ealdDfkleple 285 ++++ + ++l+pl+ 835060|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 474 LQQTsLIFPLIDLNPLD 490 23322233333444443 PP >> AA1_3.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 235.7 1.1 1.6e-73 1.6e-73 12 309 .. 150 476 .. 144 479 .. 0.86 Alignments for each domain: == domain 1 score: 235.7 bits; conditional E-value: 1.6e-73 AA1_3.hmm 12 vtreytlevtestlapDGvekeallvngqyPgptieadWGDtlevtvknnl 62 + ++++l+++++t +pDG+++ + ++n+q+Pgp i d GD+++++v+n + 835060|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 150 NYKTFNLTLRNETKSPDGFSRYIYTINNQFPGPEIIVDKGDMIRINVTNYI 200 56899********************************************99 PP AA1_3.hmm 63 kknGtsiHwHGirqlntneqDGvpgvtqCpiapgesftYefratqyGtswY 113 + t++H HG+ +++t +DGvp vtqCpi+ g+sftYef+at+ Gt wY 835060|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 201 G-HPTTFHVHGMIHKETVYMDGVPYVTQCPIQNGSSFTYEFEATHPGTYWY 250 8.5799********************************************* PP AA1_3.hmm 114 HsHyslQyadGvlGplvinGPasan.ydvd.lgpllltdwshesafelvee 162 sHy +Q adG++G+l+++ ++++ y++d +++ll+dw+h++ l+++ 835060|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 251 YSHYETQRADGLYGSLIVKDSEESKyYNYDdEKTILLSDWYHDESLMLLKN 301 ******************98865541565515899*********9999999 PP AA1_3.hmm 163 ae....asggppvadniLingknkvkkskk...........eeegeysevk 198 + +s +pv +++Lingk+ +++ k +e+ + e+ 835060|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 302 YQyssnSSIFEPVPNSGLINGKGIFDCVKYdddpikkekcnSESLIIEEIY 352 887655555679***************88799***998875555566789* PP AA1_3.hmm 199 lekgkkyrlrlintsvdstfkfsidgHkltviaaDfvpiepy.ttdsllig 248 +e+ kk r+r+ints+ ++f +sidgH l+vi+ D p p + + l i+ 835060|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 353 FEPHKKNRIRVINTSAMTSFYLSIDGHMLQVIEVDGTPTIPSsKFHRLPIH 403 **************************************877615699**** PP AA1_3.hmm 249 igqRydvi.veanqe..eenywlraelaeaCskln.......aeekeikai 289 +gqRy +i ++ q+ ++n++lrae+ ++ + + + e kai 835060|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 404 VGQRYSIIpIRLPQHesTSNFYLRAEIIKKLFRSTtpyymldSLPLELKAI 454 *******96444444669********9997333221233333778899*** PP AA1_3.hmm 290 lrYeeass..aeptskateisk 309 +rY+++++ + p++ +++ ++ 835060|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 455 IRYNDKENntSLPSTLSWTLQQ 476 ***9988744567777776665 PP >> AA1_1.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 200.9 0.1 5.3e-63 5.3e-63 2 253 .. 164 434 .. 163 489 .. 0.82 Alignments for each domain: == domain 1 score: 200.9 bits; conditional E-value: 5.3e-63 AA1_1.hmm 2 spDGfsrsavlvngtfpgplitgkkgdkfkinvvneLtdetmlkstsihwh 52 spDGfsr ++n++fpgp i kgd ++inv+n + + t+ h h 835060|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 164 SPDGFSRYIYTINNQFPGPEIIVDKGDMIRINVTNYIG-----HPTTFHVH 209 7*********************************9876.....5699**** PP AA1_1.hmm 53 glfqkgtnwadgpafvtqCPiapgnsflydfkvpdqaGtfwYHshlstqyc 103 g++ k+t ++dg+ vtqCPi++g+sf+y+f++ + Gt+wY sh++tq 835060|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 210 GMIHKETVYMDGVPYVTQCPIQNGSSFTYEFEA-THPGTYWYYSHYETQRA 259 ********************************9.789************** PP AA1_1.hmm 104 dglrGalvvydpedplkslydvddestvitladwyhtaakell........ 146 dgl G+l+v d e+ + y+ dde+t+ l+dwyh ++ ll 835060|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 260 DGLYGSLIVKDSEES--KYYNYDDEKTI-LLSDWYHDESLMLLknyqyssn 307 **********99875..678889****8.59********999888999988 PP AA1_1.hmm 147 ..klvavadstlinGlgryagg...........peae...lavvnvekgkr 181 + +v++s+linG+g + ++e + + e +k+ 835060|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 308 ssIFEPVPNSGLINGKGIFDCVkydddpikkekCNSEsliIEEIYFEPHKK 358 766779***********8763223345665555233321244577899*** PP AA1_1.hmm 182 Yrfrlvsiscdpnftfsidghnltvieadgvntkpl.tvdsiqifagqrys 231 r+r++++s+ ++f +sidgh l+vie+dg+ t p + +++ i +gqrys 835060|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 359 NRIRVINTSAMTSFYLSIDGHMLQVIEVDGTPTIPSsKFHRLPIHVGQRYS 409 ********************************99862689*********** PP AA1_1.hmm 232 vv...leanqevdnYwiranpnlgk 253 ++ l ++++n+++ra+ + 835060|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 410 IIpirLPQHESTSNFYLRAEIIKKL 434 *987778889999******876554 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (726 residues searched) Target model(s): 4 (1310 nodes) Passed MSV filter: 4 (1); expected 0.1 (0.02) Passed bias filter: 4 (1); expected 0.1 (0.02) Passed Vit filter: 4 (1); expected 0.0 (0.001) Passed Fwd filter: 4 (1); expected 0.0 (1e-05) Initial search space (Z): 4 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 123.03 // Query: 548122|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 [L=709] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.8e-103 332.8 1.2 1.2e-102 332.2 1.2 1.2 1 AA1.hmm 4.7e-79 253.9 2.6 9.4e-79 252.9 2.6 1.5 1 AA1_2.hmm 9.2e-77 246.3 0.5 1.4e-76 245.7 0.5 1.2 1 AA1_3.hmm 2.4e-66 211.9 0.1 3.4e-66 211.4 0.1 1.2 1 AA1_1.hmm Domain annotation for each model (and alignments): >> AA1.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 332.2 1.2 1.2e-102 1.2e-102 7 357 .. 157 652 .. 146 653 .. 0.75 Alignments for each domain: == domain 1 score: 332.2 bits; conditional E-value: 1.2e-102 AA1.hmm 7 versvilvNgqfPgPtieanegDtvvvtVtNklesegttiHwhGlrqlgtnw 58 + r+++++N+qfPgP i +++gDtv++++tN + ++ttiH+hG+ ++t + 548122|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 157 FIRNIYTINNQFPGPEIIVDKGDTVRINITNYI-GRSTTIHVHGMIHKETVY 207 789*****************************9.89**************** PP AA1.hmm 59 aDGvagvtqcpiapgksftYeftvteqaGtywyHsHvslqyadGlrGaliir 110 +DGv++vtqcpi+ g+sf Yef++t Gtywy sH+++q+adGl+G+li++ 548122|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 208 MDGVPYVTQCPIQNGSSFIYEFEAT-HPGTYWYYSHYETQRADGLYGSLIVK 258 ************************9.************************** PP AA1.hmm 111 dpkskekydvddeelvillsdwyhktaeell.....kenatgaepapdslli 157 dp++++ y++d +e++i+lsdwyh++++ ll ++n++ ep p+s+li 548122|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 259 DPDESRYYNYD-DEKTIFLSDWYHDESSILLknyryNNNTSIFEPIPNSGLI 309 **888889988.556***********99888766544345555667****** PP AA1.hmm 158 nGkgrlync..........s...sklevlkvepgktyrlrlinaalnaeltf 196 nGkg ++ c + ++e++ +ep+k+ rlr+in+++ +++++ 548122|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 310 NGKGIFN-CmddpikkencNfesLSVEEFYFEPNKKNRLRIINTSAMTSFYL 360 ****976.54655554433254455679************************ PP AA1.hmm 197 sidnHkltvieaDgvyvkp.yevdslqiapGqrydvl.lk..anqsagnywi 244 sid+H l+vie+Dgv+++p + + l i++Gqry+++ ++ + +s+ n+++ 548122|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 361 SIDEHMLQVIEVDGVPTNPsSKFHRLPIHVGQRYSIIpIRlpQYTSTLNFYL 412 *******************4468*************954453555556**** PP AA1.hmm 245 raslds...a........afdnttalailrYkgassas.............. 271 ra++++ ++ t+ +ai+rY+++++ + 548122|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 413 RAEFAKksfRstspystsNLFPTELRAIIRYSKKENDKslpstlswtlqqss 464 **99887661567787776667899******887666577886666666555 PP AA1.hmm 272 .................................................nvs 274 548122|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 465 lmfplidlnpldlksysqeilpenttyyefdfiiekineqktlnfnhkgF-- 514 55555555555555555555555444443333333333333333333330.. PP AA1.hmm 275 fvepstslleaysgvdetkaklkln........................... 299 n 548122|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 515 ------------------------Nddidlfygsinsvhrgvsiynpdkrtn 542 ........................0333333333333344444444444444 PP AA1.hmm 300 .......................................hp..lhghdfvvv 310 + lhgh+f+v+ 548122|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 543 tlklllegkikffpfylniyvfkrkltidlllknyddldQVfyLHGHKFWVL 594 4444455555555666667777777778888889998875578********* PP AA1.hmm 311 ....nfd.......aedeakrdtvavpkggwvvirfvadnpgvwllhchiea 351 n++ ++ krdtv+vp++gw+ i+f+ dnpg+w + i + 548122|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 595 gqgtNSTpvhsdlnYFNPIKRDTVTVPTSGWTLIKFTLDNPGIWTFSNPIVW 646 98663335533343555555******************************** PP AA1.hmm 352 HlsmGl 357 H ++G+ 548122|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 647 HQNIGM 652 *****9 PP >> AA1_2.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 252.9 2.6 9.4e-79 9.4e-79 2 320 .. 159 514 .. 158 519 .. 0.85 Alignments for each domain: == domain 1 score: 252.9 bits; conditional E-value: 9.4e-79 AA1_2.hmm 2 rrvigvNgqwPlpeievnkgdrvevkltNgledentslHfHGlfqngtnamD 53 r++ ++N+q+P pei v+kgd+v++++tN + ++t++H+HG+ +++t +mD 548122|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 159 RNIYTINNQFPGPEIIVDKGDTVRINITNYI-GRSTTIHVHGMIHKETVYMD 209 67889**************************.689***************** PP AA1_2.hmm 54 GasmvtqCpippgetltYeftveeqvGtYWyHsHskgqYeDGlrgpliiedk 105 G++ vtqCpi++g++++Yef++ + GtYWy sH+++q DGl g+li++d+ 548122|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 210 GVPYVTQCPIQNGSSFIYEFEA-THPGTYWYYSHYETQRADGLYGSLIVKDP 260 **********************.9***************************9 PP AA1_2.hmm 106 e..epyeydeeltltlsdwYheeskelvkeflskynptgaepipdsllv... 152 + y+yd+e t+ lsdwYh+es+ l+k++ ++n++ epip+s l+ 548122|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 261 DesRYYNYDDEKTIFLSDWYHDESSILLKNYRYNNNTSIFEPIPNSGLIngk 312 854556********************************************** PP AA1_2.hmm 153 .................netenatlevepgktYllriinvgafasqylvled 187 ++ + ++ +ep+k+ +lriin++a++s+yl++++ 548122|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 313 gifncmddpikkencnfESLSVEEFYFEPNKKNRLRIINTSAMTSFYLSIDE 364 ************9997666677899*************************** PP AA1_2.hmm 188 hemtivevDGvdvepse.vdslyiavaQRysvL.vkaknd.tsknyalvakm 236 h ++++evDGv ++ps+ + l i v+QRys++ ++ + ++ n+ l a++ 548122|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 365 HMLQVIEVDGVPTNPSSkFHRLPIHVGQRYSIIpIRLPQYtSTLNFYLRAEF 416 **************9875899**********9867766652669******** PP AA1_2.hmm 237 detmld.....vvpddlqlnvtstlvydksaalaeas.....tvdel..... 273 ++ + ++ + + ++ + ++y+k+++ ++ t+++ 548122|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 417 AKKSFRstspySTSNLFPTELRAIIRYSKKENDKSLPstlswTLQQSslmfp 468 *****95444323334455667889999888777666444443333233444 PP AA1_2.hmm 274 .ealdDfkleplekeelleepdkeieldvemdnlkdgvnyaffNnitY 320 +l+ ++l+++++ e+l+e ++ +e+d+ ++++++ + fN+ + 548122|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 469 lIDLNPLDLKSYSQ-EILPENTTYYEFDFIIEKINE-QKTLNFNHKGF 514 45666777777777.889999999999999987765.45556666655 PP >> AA1_3.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 245.7 0.5 1.4e-76 1.4e-76 10 309 .. 137 462 .. 126 465 .. 0.85 Alignments for each domain: == domain 1 score: 245.7 bits; conditional E-value: 1.4e-76 AA1_3.hmm 10 tgvtreytlevtestlapDGvekeallvngqyPgptieadWGDtlevtvknn 61 + ++++l ++++t +pDG+ +++ ++n+q+Pgp i d GDt++++++n 548122|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 137 IKNYKTFNLVLRNETKSPDGFIRNIYTINNQFPGPEIIVDKGDTVRINITNY 188 4567899********************************************9 PP AA1_3.hmm 62 lkknGtsiHwHGirqlntneqDGvpgvtqCpiapgesftYefratqyGtswY 113 + + t+iH HG+ +++t +DGvp vtqCpi+ g+sf Yef+at+ Gt wY 548122|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 189 IG-RSTTIHVHGMIHKETVYMDGVPYVTQCPIQNGSSFIYEFEATHPGTYWY 239 97.6899********************************************* PP AA1_3.hmm 114 HsHyslQyadGvlGplvinGPasan.ydvd.lgpllltdwshesafelveea 163 sHy +Q adG++G+l+++ P ++ y++d ++++l+dw+h++ + l+++ 548122|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 240 YSHYETQRADGLYGSLIVKDPDESRyYNYDdEKTIFLSDWYHDESSILLKNY 291 *********************76541455415899*********99999888 PP AA1_3.hmm 164 e....asggppvadniLingknkvkkskk........eeegeysevklekgk 203 + +s +p+ +++Lingk+ +++ e+ + e+ +e++k 548122|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 292 RynnnTSIFEPIPNSGLINGKGIFNCMDDpikkencnFESLSVEEFYFEPNK 343 865444555699**************8879999887656778889******* PP AA1_3.hmm 204 kyrlrlintsvdstfkfsidgHkltviaaDfvpiepytt.dslligigqRyd 254 k rlr+ints+ ++f +sid+H l+vi+ D vp +p ++ + l i++gqRy 548122|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 344 KNRLRIINTSAMTSFYLSIDEHMLQVIEVDGVPTNPSSKfHRLPIHVGQRYS 395 ************************************875499********** PP AA1_3.hmm 255 vi.veanqe...eenywlraelaea.......CsklnaeekeikailrYeea 295 +i + + + n++lrae+a++ s+ n +e +ai+rY+++ 548122|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 396 IIpI-RLPQytsTLNFYLRAEFAKKsfrstspYSTSNLFPTELRAIIRYSKK 446 *954.444446799********996322111122224667899******998 PP AA1_3.hmm 296 ss..aeptskateisk 309 ++ + p++ +++ ++ 548122|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 447 ENdkSLPSTLSWTLQQ 462 8754668887777665 PP >> AA1_1.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 211.4 0.1 3.4e-66 3.4e-66 2 273 .. 153 448 .. 152 479 .. 0.83 Alignments for each domain: == domain 1 score: 211.4 bits; conditional E-value: 3.4e-66 AA1_1.hmm 2 spDGfsrsavlvngtfpgplitgkkgdkfkinvvneLtdetmlkstsihwhg 53 spDGf r+ ++n++fpgp i kgd+++in++n + +st+ih hg 548122|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 153 SPDGFIRNIYTINNQFPGPEIIVDKGDTVRINITNYI-----GRSTTIHVHG 199 7********************************9975.....699******* PP AA1_1.hmm 54 lfqkgtnwadgpafvtqCPiapgnsflydfkvpdqaGtfwYHshlstqycdg 105 ++ k+t ++dg+ vtqCPi++g+sf y+f++ + Gt+wY sh++tq dg 548122|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 200 MIHKETVYMDGVPYVTQCPIQNGSSFIYEFEA-THPGTYWYYSHYETQRADG 250 *******************************9.789**************** PP AA1_1.hmm 106 lrGalvvydpedplkslydvddestvitladwyhtaakell..........k 147 l G+l+v dp++ + y+ dde+t+ l+dwyh +++ ll 548122|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 251 LYGSLIVKDPDES--RYYNYDDEKTI-FLSDWYHDESSILLknyrynnntsI 299 *******999875..678889**997.69*******9998888999988766 PP AA1_1.hmm 148 lvavadstlinGlgrya..gg....peaelavvnvek.....gkrYrfrlvs 188 + ++++s+linG+g ++ ++ ++ ++ ++ve+ +k+ r+r+++ 548122|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 300 FEPIPNSGLINGKGIFNcmDDpikkENCNFESLSVEEfyfepNKKNRLRIIN 351 679***********99854224433566677777754333339********* PP AA1_1.hmm 189 iscdpnftfsidghnltvieadgvntkpl.tvdsiqifagqrysvv...lea 236 +s+ ++f +sid+h l+vie+dgv t+p + +++ i +gqrys++ l 548122|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 352 TSAMTSFYLSIDEHMLQVIEVDGVPTNPSsKFHRLPIHVGQRYSIIpirLPQ 403 ***************************973689************9745555 PP AA1_1.hmm 237 nqevdnYwiranpnlgk........ntgfegginsailrykgape 273 ++ n+++ra+ + ++ ++++ + +ai+ry+ ++ 548122|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 404 YTSTLNFYLRAEFAKKSfrstspysTSNLFPTELRAIIRYSKKEN 448 56677******9988877777777666666777899999965443 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (709 residues searched) Target model(s): 4 (1310 nodes) Passed MSV filter: 4 (1); expected 0.1 (0.02) Passed bias filter: 4 (1); expected 0.1 (0.02) Passed Vit filter: 4 (1); expected 0.0 (0.001) Passed Fwd filter: 4 (1); expected 0.0 (1e-05) Initial search space (Z): 4 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: 122.29 // [ok]