# hmmscan :: search sequence(s) against a profile database # HMMER 3.3.2 (Nov 2020); http://hmmer.org/ # Copyright (C) 2020 Howard Hughes Medical Institute. # Freely distributed under the BSD open source license. # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: /array2/siva/dbcansub_update/cazy2025/match_results/dbsub_data_2025/merged_clusters/AA1/fasta_for_each_cluster/cluster_118.txt # target HMM database: merged_hmms/AA1.hmm # per-dom hits tabular output: hmmscan_out/domain_result/AA1/AA1_cluster_118.out.dm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 2111667|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 [L=557] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.8e-122 396.0 2.7 6.1e-122 395.6 2.7 1.1 1 AA1.hmm 8.9e-95 305.3 0.1 1.3e-94 304.8 0.1 1.2 1 AA1_1.hmm 1.2e-93 301.7 1.3 1.2e-93 301.7 1.3 1.6 2 AA1_3.hmm 3.8e-93 300.2 0.6 3.8e-93 300.2 0.6 1.6 2 AA1_2.hmm Domain annotation for each model (and alignments): >> AA1.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 395.6 2.7 6.1e-122 6.1e-122 7 357 .. 69 526 .. 58 527 .. 0.81 Alignments for each domain: == domain 1 score: 395.6 bits; conditional E-value: 6.1e-122 AA1.hmm 7 versvilvNgqfPgPtieanegDtvvvtVtNklesegttiHwhGlrqlgtnw 58 ++rs +lvN+q+PgP ++an+gD + +tV+N+++ +t++HwhG++q+gt w 2111667|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 69 FTRSTYLVNNQYPGPILQANKGDWFSITVENDIP-VETSMHWHGMFQRGTSW 119 799*****************************95.79*************** PP AA1.hmm 59 aDGvagvtqcpiapgksftYeftvteqaGtywyHsHvslqyadGlrGaliir 110 DGv+ v+qc i+pg+s+tYef++++q Gtyw+HsH+++qy dG+ Galii+ 2111667|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 120 FDGVPAVSQCTITPGSSLTYEFSTEGQIGTYWWHSHYNAQYIDGILGALIIH 171 **************************************************** PP AA1.hmm 111 dpkske....kydvddeelvillsdwyhktaeell....kenatgaepapds 154 dp+ + +yd e v++l+dwyh+t+++ll + ++g++p pd+ 2111667|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 172 DPE--DpylkDYD---YEYVVTLTDWYHQTSADLLalflAPGYSGGNPVPDA 218 *94..33444566...679****************998743489******** PP AA1.hmm 155 llinGkgrlync....s......sklevlkvepgktyrlrlinaalnaeltf 196 +li Gkg+++ c + s+l+v kv++gk+yr+r+in++ +a ++f 2111667|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 219 GLISGKGQFN-CdakpGyackkdSDLAVYKVQKGKKYRFRIINTSGEAFFVF 269 ********75.6455514454568899************************* PP AA1.hmm 197 sidnHkltvieaDgvyvkpyevdslqiapGqrydvllkanqsagnywirasl 248 sid+Hk++vie++g+yv+p+ev+ l ++++qry+v+++a+q+a++ywira++ 2111667|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 270 SIDGHKMKVIEVEGTYVQPFEVTKLPLHIAQRYSVIVEADQDAKDYWIRATM 321 **************************************************99 PP AA1.hmm 249 ds....a.........afdnttalailrYkgassas................ 271 +s + + n + ++il+Y+g+s++s 2111667|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 322 SSecipNngnttinhdSAINYNVTGILSYEGSSDKSpdstpytddvtpcrnl 373 887876156778888855688899******9877777888899999999999 PP AA1.hmm 272 ......................nvsfvepstsllea.ysgv.......detk 293 v+f ++ +++ea +++ + 2111667|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 374 dsklikpltasppkeatqtisyFVTFGRNEKNVTEAlMNNSsyvpdynS--- 422 9999999888888888888888555555555555553222233443320... PP AA1.hmm 294 a...........klkln..................hplhghdfvvv.....n 311 + + hgh+f+++ n 2111667|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 423 PttlkviddhvdV---KtlptsqnieelndekgvvEITHGHTFWLIgdgvgN 471 1323334443320...1334445555666666654559********998874 PP AA1.hmm 312 fd...aedeak..........rdtvavpkggwvvirfvadnpgvwllhchie 350 ++ k rdt++vp++gw +irf+ dnpgvw++hchie 2111667|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 472 YTdniD----KssyntvdppiRDTTVVPAHGWSTIRFTIDNPGVWVFHCHIE 519 444330....22344466777******************************* PP AA1.hmm 351 aHlsmGl 357 +H+++G+ 2111667|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 520 WHIEIGM 526 ******9 PP >> AA1_1.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 304.8 0.1 1.3e-94 1.3e-94 2 297 .. 65 383 .. 64 388 .. 0.89 Alignments for each domain: == domain 1 score: 304.8 bits; conditional E-value: 1.3e-94 AA1_1.hmm 2 spDGfsrsavlvngtfpgplitgkkgdkfkinvvneLtdetmlkstsihwhg 53 +pDGf+rs+ lvn+++pgp+++++kgd f+i+v n++ +ts+hwhg 2111667|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 65 APDGFTRSTYLVNNQYPGPILQANKGDWFSITVENDI-----PVETSMHWHG 111 69*******************************9976.....5789****** PP AA1_1.hmm 54 lfqkgtnwadgpafvtqCPiapgnsflydfkvpdqaGtfwYHshlstqycdg 105 +fq+gt+w dg+ v+qC i+pg+s +y+f++++q Gt+w+Hsh+++qy+dg 2111667|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 112 MFQRGTSWFDGVPAVSQCTITPGSSLTYEFSTEGQIGTYWWHSHYNAQYIDG 163 **************************************************** PP AA1_1.hmm 106 lrGalvvydpedplkslydvddestvitladwyhtaakell.........kl 148 + Gal+++dpedp+ + yd + v+tl+dwyh+++ +ll + 2111667|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 164 ILGALIIHDPEDPYLKDYDYE---YVVTLTDWYHQTSADLLalflapgysGG 212 ******************875...79***********999889999999888 PP AA1_1.hmm 149 vavadstlinGlgryagg........peaelavvnvekgkrYrfrlvsiscd 192 +v+d++li G+g+++ + ++++lav +v+kgk+Yrfr++++s + 2111667|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 213 NPVPDAGLISGKGQFNCDakpgyackKDSDLAVYKVQKGKKYRFRIINTSGE 264 8**************966566677768999********************** PP AA1_1.hmm 193 pnftfsidghnltvieadgvntkpltvdsiqifagqrysvvleanqevdnYw 244 + f+fsidgh+++vie++g+ ++p +v ++ + +qrysv++ea+q+ ++Yw 2111667|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 265 AFFVFSIDGHKMKVIEVEGTYVQPFEVTKLPLHIAQRYSVIVEADQDAKDYW 316 **************************************************** PP AA1_1.hmm 245 iranpnlgk.......ntgfeggin...sailrykgapeaePttkq....ka 282 ira+++++ + + +++in + il y+g++++ P ++ + 2111667|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 317 IRATMSSECipnngntTINHDSAINynvTGILSYEGSSDKSPDSTPytddVT 368 ***9988777766655334444454222579******999998776432244 PP AA1_1.hmm 283 stnpLkeanlhplva 297 ++L+ + ++pl+a 2111667|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 369 PCRNLDSKLIKPLTA 383 455666666677765 PP >> AA1_3.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 301.7 1.3 1.2e-93 1.2e-93 9 306 .. 48 365 .. 43 371 .. 0.91 2 ? -2.0 0.0 0.36 0.36 99 126 .. 500 527 .. 488 531 .. 0.80 Alignments for each domain: == domain 1 score: 301.7 bits; conditional E-value: 1.2e-93 AA1_3.hmm 9 ktgvtreytlevtestlapDGvekeallvngqyPgptieadWGDtlevtvkn 60 ++ +tr+ytl++++++ apDG+++++ lvn+qyPgp+++a+ GD++++tv+n 2111667|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 48 DQPQTRKYTLKLSQTQWAPDGFTRSTYLVNNQYPGPILQANKGDWFSITVEN 99 56689*********************************************** PP AA1_3.hmm 61 nlkknGtsiHwHGirqlntneqDGvpgvtqCpiapgesftYefrat.qyGts 111 ++ ts+HwHG+ q t++ DGvp+v+qC i+pg+s tYef+++ q Gt 2111667|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 100 DIPV-ETSMHWHGMFQRGTSWFDGVPAVSQCTITPGSSLTYEFSTEgQIGTY 150 **96.59************************************98669**** PP AA1_3.hmm 112 wYHsHyslQyadGvlGplvinGPas...anydvdlgpllltdwshesafelv 160 w+HsHy +Qy dG+lG+l+i+ P+ ++yd++ +++ltdw+h++ +l+ 2111667|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 151 WWHSHYNAQYIDGILGALIIHDPEDpylKDYDYE-YVVTLTDWYHQTSADLL 201 *********************9975333788887.47899*******99999 PP AA1_3.hmm 161 eeae...asggppvadniLingknkvkkskk.....eeegeysevklekgkk 204 + sgg+pv d +Li gk+++++++k ++++ + k++kgkk 2111667|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 202 ALFLapgYSGGNPVPDAGLISGKGQFNCDAKpgyacKKDSDLAVYKVQKGKK 253 98887889999*****************9999*99989999999******** PP AA1_3.hmm 205 yrlrlintsvdstfkfsidgHkltviaaDfvpiepyttdslligigqRydvi 256 yr+r+ints +++f fsidgHk++vi+ ++p++++ l ++i+qRy vi 2111667|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 254 YRFRIINTSGEAFFVFSIDGHKMKVIEVEGTYVQPFEVTKLPLHIAQRYSVI 305 **************************************************** PP AA1_3.hmm 257 veanqeeenywlraelaeaCskln.........aeekeikailrYeeassae 299 vea+q++++yw+ra+++++C n a + + ++il+Ye++s+++ 2111667|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 306 VEADQDAKDYWIRATMSSECIPNNgnttinhdsAINYNVTGILSYEGSSDKS 357 ********************76544445545445678899************ PP AA1_3.hmm 300 ptska.te 306 p s++ t+ 2111667|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 358 PDSTPyTD 365 **999443 PP == domain 2 score: -2.0 bits; conditional E-value: 0.36 AA1_3.hmm 99 ftYefratqyGtswYHsHyslQyadGvl 126 t +f++++ G +H H+ G+l 2111667|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 500 STIRFTIDNPGVWVFHCHIEWHIEIGML 527 6789999999********9988887776 PP >> AA1_2.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 300.2 0.6 3.8e-93 3.8e-93 5 327 .. 74 424 .. 70 431 .. 0.91 2 ? -2.2 0.1 0.35 0.35 71 101 .. 502 531 .. 492 538 .. 0.82 Alignments for each domain: == domain 1 score: 300.2 bits; conditional E-value: 3.8e-93 AA1_2.hmm 5 igvNgqwPlpeievnkgdrvevkltNgledentslHfHGlfqngtnamDGas 56 vN+q+P p +++nkgd +++++N++ +ts+H+HG+fq+gt+++DG++ 2111667|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 74 YLVNNQYPGPILQANKGDWFSITVENDI-PVETSMHWHGMFQRGTSWFDGVP 124 569*************************.889******************** PP AA1_2.hmm 57 mvtqCpippgetltYeftveeqvGtYWyHsHskgqYeDGlrgpliiedkeep 108 +v+qC i+pg++ltYef++e q+GtYW+HsH+++qY+DG+ g+lii+d+e+p 2111667|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 125 AVSQCTITPGSSLTYEFSTEGQIGTYWWHSHYNAQYIDGILGALIIHDPEDP 176 **************************************************** PP AA1_2.hmm 109 y..eydeeltltlsdwYheeskelvkeflskynptgaepipdsllv...... 152 y +yd e+++tl+dwYh++s +l++ fl + +g +p+pd+ l+ 2111667|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 177 YlkDYDYEYVVTLTDWYHQTSADLLALFLAPGY-SGGNPVPDAGLIsgkgqf 227 **9*************************99765.5889************** PP AA1_2.hmm 153 ...........netenatlevepgktYllriinvgafasqylvledhemtiv 193 ++++ a +v++gk+Y++riin++ a +++++++h+m+++ 2111667|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 228 ncdakpgyackKDSDLAVYKVQKGKKYRFRIINTSGEAFFVFSIDGHKMKVI 279 **********999999999********************************* PP AA1_2.hmm 194 evDGvdvepsevdslyiavaQRysvLvkakndtsknyalvakmdetmld... 242 ev+G++v+p ev++l + +aQRysv+v+a +d k+y++ a+m ++ + 2111667|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 280 EVEGTYVQPFEVTKLPLHIAQRYSVIVEADQD-AKDYWIRATMSSECIPnng 330 ****************************9776.689********99976677 PP AA1_2.hmm 243 ....vvpddlqlnvtstlvydksaalaeas.....tvdelealdDfkleple 285 +++++nvt l+y+ s ++ s v+ +++ld ++pl+ 2111667|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 331 nttiNHDSAINYNVTGILSYEGSSDKSPDStpytdDVTPCRNLDSKLIKPLT 382 774445578999********98887766654544444566999********* PP AA1_2.hmm 286 keelleepdkeieldvemdnlkdgvnyaffNnitYvap.kvpt 327 + + +e++++i+ v++ + +v+ a++Nn +Yv + pt 2111667|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 383 A-SPPKEATQTISYFVTFGRNEKNVTEALMNNSSYVPDyNSPT 424 9.999******************************97534454 PP == domain 2 score: -2.2 bits; conditional E-value: 0.35 AA1_2.hmm 71 YeftveeqvGtYWyHsHskgqYeDGlrgpli 101 +ft+ ++ G + +H+H + + e G+ + ++ 2111667|Gigro1_GeneCatalog_proteins_20160405.aa.fasta|AA1 502 IRFTI-DNPGVWVFHCHIEWHIEIGMLAQFV 531 56888.999*********9999999888776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (557 residues searched) Target model(s): 4 (1310 nodes) Passed MSV filter: 4 (1); expected 0.1 (0.02) Passed bias filter: 4 (1); expected 0.1 (0.02) Passed Vit filter: 4 (1); expected 0.0 (0.001) Passed Fwd filter: 4 (1); expected 0.0 (1e-05) Initial search space (Z): 4 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 101.98 // Query: 717735|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 [L=592] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.5e-119 385.7 1.5 8.3e-119 385.3 1.5 1.0 1 AA1.hmm 2.5e-95 307.4 0.1 2.5e-95 307.4 0.1 1.5 2 AA1_2.hmm 2.5e-93 300.5 0.0 3.4e-93 300.1 0.0 1.2 1 AA1_1.hmm 6.5e-89 286.2 0.2 1.6e-88 284.9 0.1 1.7 2 AA1_3.hmm Domain annotation for each model (and alignments): >> AA1.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 385.3 1.5 8.3e-119 8.3e-119 7 357 .. 72 540 .. 60 541 .. 0.82 Alignments for each domain: == domain 1 score: 385.3 bits; conditional E-value: 8.3e-119 AA1.hmm 7 versvilvNgqfPgPtieanegDtvvvtVtNklesegttiHwhGlrqlgtnwa 59 ++++++++Ngq+Pg i+an+gD+++vtV+N++ e+ iHwhG++q+gtnw+ 717735|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 72 FTKRIFAINGQYPGTIIHANKGDRIQVTVRNNI-GEPSVIHWHGMFQRGTNWY 123 6899****************************9.89***************** PP AA1.hmm 60 DGvagvtqcpiapgksftYeftvteqaGtywyHsHvslqyadGlrGaliirdp 112 DGv+g tqcpi+ g+sf+Y+f+++eq Gt+wyH+H+ qy++G+r +lii+dp 717735|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 124 DGVSGQTQCPIPNGSSFVYDFSTQEQRGTFWYHAHTHGQYMEGIRAPLIIHDP 176 ***************************************************99 PP AA1.hmm 113 kske....kydvddeelvillsdwyhktaeell....kenatgaepapdslli 157 + + +yd+ e +i++sdwyh+ ++++l + n+ g +p pds+li 717735|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 177 N--DpyrsEYDF---EYIITMSDWYHQRVSDMLairmSPNYGGFNPIPDSGLI 224 4..334557886...69***************999875568999999****** PP AA1.hmm 158 nGkgrlync......s.....sklevlkvepgktyrlrlinaalnaeltfsid 199 G gr+ nc s s+l++ +v+pg++yrlrlin++ +++ fsid 717735|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 225 SGFGRY-NCsaappgStcqenSPLAEYRVTPGRRYRLRLINTSGLTHFIFSID 276 *****6.674555541555567788**************************** PP AA1.hmm 200 nHkltvieaDgvyvkpyevdslqiapGqrydvllkanqsagnywiraslds.. 250 nH l +ieaDg+y +p+ v+ l +a+Gqry+v+++anq++gnyw+ra++d+ 717735|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 277 NHPLRIIEADGEYSRPVIVNKLPVAIGQRYSVIIDANQTVGNYWMRATIDDrc 329 ***********************************************999877 PP AA1.hmm 251 ...a.......afdnttalailrYkgassas...................... 271 + + n + ++ilrY+ga+s 717735|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 330 lliNnrtvnvdSAINYNVTGILRYDGAESGFpqsteypdqldpclsidpnllk 382 766156777775568889********766557777889999999999999999 PP AA1.hmm 272 ..................................nvsfvep.stslleaysgv 289 n sfv ++l++ 717735|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 383 tlepqqipgpatnniqlvvtfrnddqdvtrafinNSSFVVDnYNPTLQK---- 431 9999999999999999955555555555444444333322212222233.... PP AA1.hmm 290 detka........klkln........................hp..lhghdfv 308 + +++ n hp +hgh+f+ 717735|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 432 ----FvsddvpldQFPANqniyaydqpggiidityinnnsavHPihMHGHNFY 480 ....03332333322222445555555566666666777888*********** PP AA1.hmm 309 vv........nfdaedeak........rdtvavpkggwvvirfvadnpgvwll 345 v+ + e++ rdt++v++ +w v+r++adnpg+w + 717735|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 481 VLgtgsglvvD-----ESRlnlvdpfpRDTFVVNSTSWSVFRYRADNPGIWSI 528 **765444331.....33334555666************************** PP AA1.hmm 346 hchieaHlsmGl 357 hchie+H++mG+ 717735|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 529 HCHIEWHVEMGM 540 ***********9 PP >> AA1_2.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 307.4 0.1 2.5e-95 2.5e-95 2 333 .. 74 434 .. 73 437 .. 0.93 2 ? -3.9 0.1 1.2 1.2 75 101 .. 520 545 .. 510 546 .. 0.78 Alignments for each domain: == domain 1 score: 307.4 bits; conditional E-value: 2.5e-95 AA1_2.hmm 2 rrvigvNgqwPlpeievnkgdrvevkltNgledentslHfHGlfqngtnamDG 54 +r+ ++Ngq+P i++nkgdr++v++ N++ e++ +H+HG+fq+gtn++DG 717735|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 74 KRIFAINGQYPGTIIHANKGDRIQVTVRNNI-GEPSVIHWHGMFQRGTNWYDG 125 78999**************************.56999**************** PP AA1_2.hmm 55 asmvtqCpippgetltYeftveeqvGtYWyHsHskgqYeDGlrgpliiedkee 107 +s+ tqCpip+g++++Y+f+++eq Gt+WyH+H++gqY+ G+r+plii+d+++ 717735|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 126 VSGQTQCPIPNGSSFVYDFSTQEQRGTFWYHAHTHGQYMEGIRAPLIIHDPND 178 ***************************************************** PP AA1_2.hmm 108 py..eydeeltltlsdwYheeskelvkeflskynptgaepipdsllv...... 152 py eyd e+++t+sdwYh++++++++ +s n g +pipds l+ 717735|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 179 PYrsEYDFEYIITMSDWYHQRVSDMLAIRMS-PNYGGFNPIPDSGLIsgfgry 230 **99**********************99888.5889***************** PP AA1_2.hmm 153 ............netenatlevepgktYllriinvgafasqylvledhemtiv 193 +++ a+ +v+pg++Y+lr+in++ ++ + +++++h ++i+ 717735|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 231 ncsaappgstcqENSPLAEYRVTPGRRYRLRLINTSGLTHFIFSIDNHPLRII 283 **********98888999*********************************** PP AA1_2.hmm 194 evDGvdvepsevdslyiavaQRysvLvkakndtsknyalvakmdetmld.... 242 e+DG + +p+ v++l +a++QRysv++ a n+t ny++ a++d++ l 717735|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 284 EADGEYSRPVIVNKLPVAIGQRYSVIIDA-NQTVGNYWMRATIDDRCLLinnr 335 ***************************98.56789**********99766677 PP AA1_2.hmm 243 ..vvpddlqlnvtstlvydksaalaeas.....tvdelealdDfkleplekee 288 v +++++nvt l+yd +++ +s ++d + ++d l++le ++ 717735|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 336 tvNVDSAINYNVTGILRYDGAESGFPQSteypdQLDPCLSIDPNLLKTLEPQQ 388 66778999***********988765555454555677899************* PP AA1_2.hmm 289 lleepdkeieldvemdnlkdgvnyaffNnitYvap.kvptlltvls 333 + ++++i+l v+++n ++ v++af+Nn ++v ptl +s 717735|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 389 IPGPATNNIQLVVTFRNDDQDVTRAFINNSSFVVDnYNPTLQKFVS 434 ********************************87625688876655 PP == domain 2 score: -3.9 bits; conditional E-value: 1.2 AA1_2.hmm 75 veeqvGtYWyHsHskgqYeDGlrgpli 101 + ++ G + +H+H + + e G+ + li 717735|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 520 A-DNPGIWSIHCHIEWHVEMGMIAQLI 545 3.67999999***99998888877665 PP >> AA1_1.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 300.1 0.0 3.4e-93 3.4e-93 2 301 .. 68 390 .. 67 392 .. 0.89 Alignments for each domain: == domain 1 score: 300.1 bits; conditional E-value: 3.4e-93 AA1_1.hmm 2 spDGfsrsavlvngtfpgplitgkkgdkfkinvvneLtdetmlkstsihwhgl 54 +pDGf+++ +ng++pg++i+++kgd+++++v n++ +++ ihwhg+ 717735|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 68 APDGFTKRIFAINGQYPGTIIHANKGDRIQVTVRNNIGEPS-----VIHWHGM 115 7**********************************999876.....59***** PP AA1_1.hmm 55 fqkgtnwadgpafvtqCPiapgnsflydfkvpdqaGtfwYHshlstqycdglr 107 fq+gtnw dg++ tqCPi +g+sf+ydf++++q GtfwYH+h + qy++g+r 717735|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 116 FQRGTNWYDGVSGQTQCPIPNGSSFVYDFSTQEQRGTFWYHAHTHGQYMEGIR 168 ***************************************************** PP AA1_1.hmm 108 Galvvydpedplkslydvddestvitladwyhtaakell.........klvav 151 +l+++dp+dp++s yd++ +it++dwyh+ +++l ++ ++ 717735|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 169 APLIIHDPNDPYRSEYDFE---YIITMSDWYHQRVSDMLairmspnygGFNPI 218 ****************996...7***********99998899999998889** PP AA1_1.hmm 152 adstlinGlgryagg.........peaelavvnvekgkrYrfrlvsiscdpnf 195 +ds+li G gry+ + ++++la +v+ g+rYr+rl+++s ++f 717735|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 219 PDSGLISGFGRYNCSaappgstcqENSPLAEYRVTPGRRYRLRLINTSGLTHF 271 ************9554566666667899************************* PP AA1_1.hmm 196 tfsidghnltvieadgvntkpltvdsiqifagqrysvvleanqevdnYwiran 248 fsid+h l +ieadg+ ++p+ v+++ + gqrysv+++anq+v+nYw+ra+ 717735|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 272 IFSIDNHPLRIIEADGEYSRPVIVNKLPVAIGQRYSVIIDANQTVGNYWMRAT 324 ***************************************************** PP AA1_1.hmm 249 pnlgk......ntgfeggin...sailrykgapeaePttkq....kastnpLk 288 + + + +++++in + ilry+ga++ P++++ + ++ 717735|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 325 IDDRCllinnrTVNVDSAINynvTGILRYDGAESGFPQSTEypdqLDPCLSID 377 99877777766667777776333579***********9998432111222344 PP AA1_1.hmm 289 eanlhplvaeaaP 301 + l++l+ ++ P 717735|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 378 PNLLKTLEPQQIP 390 4445666666666 PP >> AA1_3.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 284.9 0.1 1.6e-88 1.6e-88 8 306 .. 50 367 .. 46 374 .. 0.91 2 ? -2.8 0.0 0.64 0.64 99 129 .. 514 544 .. 508 548 .. 0.84 Alignments for each domain: == domain 1 score: 284.9 bits; conditional E-value: 1.6e-88 AA1_3.hmm 8 pktgvtreytlevtestlapDGvekeallvngqyPgptieadWGDtlevtvkn 60 +t vtr+y++ +++ lapDG++k+++++ngqyPg +i+a+ GD+++vtv+n 717735|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 50 TPTPVTRNYEIVLSQIDLAPDGFTKRIFAINGQYPGTIIHANKGDRIQVTVRN 102 57899************************************************ PP AA1_3.hmm 61 nlkknGtsiHwHGirqlntneqDGvpgvtqCpiapgesftYefra.tqyGtsw 112 n+ + + iHwHG+ q tn++DGv+g tqCpi+ g+sf+Y+f++ +q Gt w 717735|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 103 NIG-EPSVIHWHGMFQRGTNWYDGVSGQTQCPIPNGSSFVYDFSTqEQRGTFW 154 **8.5688***********************************872589**** PP AA1_3.hmm 113 YHsHyslQyadGvlGplvinGP...asanydvdlgpllltdwshesafelvee 162 YH+H Qy++G+ pl+i+ P +++yd + ++++dw+h+ ++++++ 717735|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 155 YHAHTHGQYMEGIRAPLIIHDPndpYRSEYDFEY-IITMSDWYHQRVSDMLAI 206 ********************98322468898885.6889**********9998 PP AA1_3.hmm 163 ae...asggppvadniLingknkvkkskk......eeegeysevklekgkkyr 206 + g +p+ d++Li g +++++s++ +e++ +e ++++g++yr 717735|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 207 RMspnYGGFNPIPDSGLISGFGRYNCSAAppgstcQENSPLAEYRVTPGRRYR 259 8867566778****************9889***9999999************* PP AA1_3.hmm 207 lrlintsvdstfkfsidgHkltviaaDfvpiepyttdslligigqRydvivea 259 lrlints ++f fsid+H l++i+aD +p+ ++ l ++igqRy vi++a 717735|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 260 LRLINTSGLTHFIFSIDNHPLRIIEADGEYSRPVIVNKLPVAIGQRYSVIIDA 312 ***************************************************** PP AA1_3.hmm 260 nqeeenywlraelaeaCskln........aeekeikailrYeeassaeptska 304 nq+++nyw+ra+++++C +n a + + ++ilrY++a+s p+s++ 717735|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 313 NQTVGNYWMRATIDDRCLLINnrtvnvdsAINYNVTGILRYDGAESGFPQSTE 365 *****************98864555555556788999********99999998 PP AA1_3.hmm 305 te 306 ++ 717735|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 366 YP 367 54 PP == domain 2 score: -2.8 bits; conditional E-value: 0.64 AA1_3.hmm 99 ftYefratqyGtswYHsHyslQyadGvlGpl 129 ++++ra++ G H H+ G++ +l 717735|Rhidi1_GeneCatalog_proteins_20160421.aa.fasta|AA1 514 SVFRYRADNPGIWSIHCHIEWHVEMGMIAQL 544 678999******99*****999999998776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (592 residues searched) Target model(s): 4 (1310 nodes) Passed MSV filter: 4 (1); expected 0.1 (0.02) Passed bias filter: 4 (1); expected 0.1 (0.02) Passed Vit filter: 4 (1); expected 0.0 (0.001) Passed Fwd filter: 4 (1); expected 0.0 (1e-05) Initial search space (Z): 4 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 109.41 // Query: 395806|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 [L=591] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3e-121 393.4 2.4 3.6e-121 393.1 2.4 1.0 1 AA1.hmm 1.8e-95 307.8 0.4 1.8e-95 307.8 0.4 1.5 2 AA1_2.hmm 1.5e-93 301.3 0.1 2e-93 300.9 0.1 1.1 1 AA1_1.hmm 3.2e-90 290.5 1.6 3.3e-90 290.4 0.3 1.6 2 AA1_3.hmm Domain annotation for each model (and alignments): >> AA1.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 393.1 2.4 3.6e-121 3.6e-121 7 357 .. 71 539 .. 58 540 .. 0.80 Alignments for each domain: == domain 1 score: 393.1 bits; conditional E-value: 3.6e-121 AA1.hmm 7 versvilvNgqfPgPtieanegDtvvvtVtNklesegttiHwhGlrqlgtnw 58 ++++++++Ngq+Pg i+an+gD+++vtV+N++ e+ iHwhG++q+gtnw 395806|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 71 FTKTIFAINGQYPGTVIHANKGDRIQVTVRNNI-GEPSVIHWHGMFQRGTNW 121 7899****************************9.89**************** PP AA1.hmm 59 aDGvagvtqcpiapgksftYeftvteqaGtywyHsHvslqyadGlrGaliir 110 +DGv+g tqcpi+ g+sf+Y+f+++eq Gt+wyH+H+ qy++G+r +lii+ 395806|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 122 YDGVSGQTQCPIPNGSSFVYDFSTQEQRGTFWYHAHTHGQYMEGIRAPLIIH 173 **************************************************** PP AA1.hmm 111 dpkske....kydvddeelvillsdwyhktaeell....kenatgaepapds 154 dp+ + +yd+ e +i++sdwyh+ ++++l + n+ g++p pds 395806|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 174 DPN--DpyrkDYDF---EYIITMSDWYHQRVSDMLairmSPNYGGRNPIPDS 220 994..333446775...69***************9998755699******** PP AA1.hmm 155 llinGkgrlync.....s......sklevlkvepgktyrlrlinaalnaelt 195 +li G+gr+ nc + ++l++ kv+pgk+yrlrlin++ ++++ 395806|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 221 GLISGAGRY-NCsaappGsecrenNPLAEYKVTPGKKYRLRLINTSGLTHFM 271 ********6.674555505565657788************************ PP AA1.hmm 196 fsidnHkltvieaDgvyvkpyevdslqiapGqrydvllkanqsagnywiras 247 fsidnH l++ieaDg+y kp+ v+ l +a+Gqry+v+++anq+++nyw+ra+ 395806|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 272 FSIDNHPLKIIEADGEYSKPVIVNKLPVAIGQRYSVIIDANQKVDNYWMRAT 323 ***************************************************9 PP AA1.hmm 248 lds.....a.......afdnttalailrYkgassas................ 271 +d+ + + n + ++il+Y+ga s 395806|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 324 IDDrclliNnqtvnfdSAINYNVTGILKYDGAGSGYpisteypdqlepclsi 375 998787661567867644688889*****99544335666667777788888 PP AA1.hmm 272 ........................................nvsf.vepstsl 282 n sf v + ++ 395806|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 376 dpnllktlepqqipgpvtnkiqlvvtfrdddqnvtrafinNSSFaVDDNHPT 427 8888888888888888888888844444444444444444333312223333 PP AA1.hmm 283 leaysgvdetka........klkln........................hp. 301 le+ + +++ n hp 395806|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 428 LEK--------FvsddvpldQFPANqniyaydqlggvidiayinnnsaiHPi 471 333........03333333322222445555566666666677888999*** PP AA1.hmm 302 .lhghdfvvv......nfdaedeak........rdtvavpkggwvvirfvad 338 +hgh+f+v+ de+k rdt++v++ +w v+r++ad 395806|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 472 hMHGHNFYVLgtgsgiV---VDESKlnlvdpfpRDTFVVNSTSWSVFRYKAD 520 **********7644440...4444445566677******************* PP AA1.hmm 339 npgvwllhchieaHlsmGl 357 npgvw +hchie+H++mG+ 395806|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 521 NPGVWSIHCHIEWHVEMGM 539 ******************9 PP >> AA1_2.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 307.8 0.4 1.8e-95 1.8e-95 2 332 .. 73 432 .. 72 436 .. 0.92 2 ? -3.9 0.1 1.1 1.1 73 99 .. 517 542 .. 508 544 .. 0.74 Alignments for each domain: == domain 1 score: 307.8 bits; conditional E-value: 1.8e-95 AA1_2.hmm 2 rrvigvNgqwPlpeievnkgdrvevkltNgledentslHfHGlfqngtnamD 53 +++ ++Ngq+P +i++nkgdr++v++ N++ e++ +H+HG+fq+gtn++D 395806|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 73 KTIFAINGQYPGTVIHANKGDRIQVTVRNNI-GEPSVIHWHGMFQRGTNWYD 123 67789**************************.56999*************** PP AA1_2.hmm 54 GasmvtqCpippgetltYeftveeqvGtYWyHsHskgqYeDGlrgpliiedk 105 G+s+ tqCpip+g++++Y+f+++eq Gt+WyH+H++gqY+ G+r+plii+d+ 395806|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 124 GVSGQTQCPIPNGSSFVYDFSTQEQRGTFWYHAHTHGQYMEGIRAPLIIHDP 175 **************************************************** PP AA1_2.hmm 106 eepy..eydeeltltlsdwYheeskelvkeflskynptgaepipdsllv... 152 ++py +yd e+++t+sdwYh++++++++ +s n g +pipds l+ 395806|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 176 NDPYrkDYDFEYIITMSDWYHQRVSDMLAIRMS-PNYGGRNPIPDSGLIsga 226 ****999*********************99888.6889************** PP AA1_2.hmm 153 ...............netenatlevepgktYllriinvgafasqylvledhe 189 +++ a+ +v+pgk+Y+lr+in++ ++ +++++++h 395806|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 227 gryncsaappgsecrENNPLAEYKVTPGKKYRLRLINTSGLTHFMFSIDNHP 278 **************999999******************************** PP AA1_2.hmm 190 mtivevDGvdvepsevdslyiavaQRysvLvkakndtsknyalvakmdetml 241 ++i+e+DG + +p+ v++l +a++QRysv++ a+++ +ny++ a++d++ l 395806|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 279 LKIIEADGEYSKPVIVNKLPVAIGQRYSVIIDANQK-VDNYWMRATIDDRCL 329 ********************************9765.579*********997 PP AA1_2.hmm 242 d......vvpddlqlnvtstlvydksaalaeas.....tvdelealdDfkle 282 +++++nvt l+yd + + s +++ + ++d l+ 395806|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 330 LinnqtvNFDSAINYNVTGILKYDGAGSGYPISteypdQLEPCLSIDPNLLK 381 655664455688999********98876554443334456777999****** PP AA1_2.hmm 283 plekeelleepdkeieldvemdnlkdgvnyaffNnitYv.apkvptlltvl 332 +le +++ ++++i+l v+++ +++v++af+Nn ++ + + ptl + 395806|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 382 TLEPQQIPGPVTNKIQLVVTFRDDDQNVTRAFINNSSFAvDDNHPTLEKFV 432 **************************************6156889987665 PP == domain 2 score: -3.9 bits; conditional E-value: 1.1 AA1_2.hmm 73 ftveeqvGtYWyHsHskgqYeDGlrgp 99 +++ ++ G + +H+H + + e G+ + 395806|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 517 YKA-DNPGVWSIHCHIEWHVEMGMIAQ 542 344.78999999***998888887655 PP >> AA1_1.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 300.9 0.1 2e-93 2e-93 2 302 .. 67 390 .. 66 391 .. 0.89 Alignments for each domain: == domain 1 score: 300.9 bits; conditional E-value: 2e-93 AA1_1.hmm 2 spDGfsrsavlvngtfpgplitgkkgdkfkinvvneLtdetmlkstsihwhg 53 +pDGf+++ +ng++pg++i+++kgd+++++v n++ +++ ihwhg 395806|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 67 APDGFTKTIFAINGQYPGTVIHANKGDRIQVTVRNNIGEPS-----VIHWHG 113 7**********************************999876.....59**** PP AA1_1.hmm 54 lfqkgtnwadgpafvtqCPiapgnsflydfkvpdqaGtfwYHshlstqycdg 105 +fq+gtnw dg++ tqCPi +g+sf+ydf++++q GtfwYH+h + qy++g 395806|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 114 MFQRGTNWYDGVSGQTQCPIPNGSSFVYDFSTQEQRGTFWYHAHTHGQYMEG 165 **************************************************** PP AA1_1.hmm 106 lrGalvvydpedplkslydvddestvitladwyhtaakell.........kl 148 +r +l+++dp+dp+++ yd++ +it++dwyh+ +++l + 395806|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 166 IRAPLIIHDPNDPYRKDYDFE---YIITMSDWYHQRVSDMLairmspnygGR 214 ******************996...7***********9999889999988878 PP AA1_1.hmm 149 vavadstlinGlgryagg.........peaelavvnvekgkrYrfrlvsisc 191 +++ds+li G gry+ + ++++la +v+ gk+Yr+rl+++s 395806|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 215 NPIPDSGLISGAGRYNCSaappgsecrENNPLAEYKVTPGKKYRLRLINTSG 266 89*************9655666677767889********************* PP AA1_1.hmm 192 dpnftfsidghnltvieadgvntkpltvdsiqifagqrysvvleanqevdnY 243 ++f+fsid+h l++ieadg+ +kp+ v+++ + gqrysv+++anq+vdnY 395806|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 267 LTHFMFSIDNHPLKIIEADGEYSKPVIVNKLPVAIGQRYSVIIDANQKVDNY 318 **************************************************** PP AA1_1.hmm 244 wiranpnlgk......ntgfeggin...sailrykgapeaePttkq.kastn 285 w+ra+ + + + +f+++in + il+y+ga + P +++ ++ + 395806|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 319 WMRATIDDRCllinnqTVNFDSAINynvTGILKYDGAGSGYPISTEyPDQLE 370 *****99876777766788999988333479***********9988533333 PP AA1_1.hmm 286 p...LkeanlhplvaeaaPg 302 p ++ + l++l+ ++ Pg 395806|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 371 PclsIDPNLLKTLEPQQIPG 390 31113444466666666665 PP >> AA1_3.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 290.4 0.3 3.3e-90 3.3e-90 10 305 .. 51 365 .. 45 373 .. 0.90 2 ? -2.9 0.0 0.67 0.67 99 129 .. 513 543 .. 507 544 .. 0.83 Alignments for each domain: == domain 1 score: 290.4 bits; conditional E-value: 3.3e-90 AA1_3.hmm 10 tgvtreytlevtestlapDGvekeallvngqyPgptieadWGDtlevtvknn 61 + +tr+y++e+++ tlapDG++k+++++ngqyPg +i+a+ GD+++vtv+nn 395806|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 51 NPITRNYEVELSQITLAPDGFTKTIFAINGQYPGTVIHANKGDRIQVTVRNN 102 5689************************************************ PP AA1_3.hmm 62 lkknGtsiHwHGirqlntneqDGvpgvtqCpiapgesftYefra.tqyGtsw 112 + + + iHwHG+ q tn++DGv+g tqCpi+ g+sf+Y+f++ +q Gt w 395806|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 103 IG-EPSVIHWHGMFQRGTNWYDGVSGQTQCPIPNGSSFVYDFSTqEQRGTFW 153 *8.5688***********************************872589**** PP AA1_3.hmm 113 YHsHyslQyadGvlGplvinGPa...sanydvdlgpllltdwshesafelve 161 YH+H Qy++G+ pl+i+ P+ +++yd + ++++dw+h+ ++++++ 395806|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 154 YHAHTHGQYMEGIRAPLIIHDPNdpyRKDYDFEY-IITMSDWYHQRVSDMLA 204 ********************98521156777764.6789**********999 PP AA1_3.hmm 162 eae...asggppvadniLingknkvkkskk......eeegeysevklekgkk 204 + g++p+ d++Li g +++++s++ +e++ +e k+++gkk 395806|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 205 IRMspnYGGRNPIPDSGLISGAGRYNCSAAppgsecRENNPLAEYKVTPGKK 256 88877667788****************9889**99989999*********** PP AA1_3.hmm 205 yrlrlintsvdstfkfsidgHkltviaaDfvpiepyttdslligigqRydvi 256 yrlrlints ++f+fsid+H l++i+aD +p+ ++ l ++igqRy vi 395806|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 257 YRLRLINTSGLTHFMFSIDNHPLKIIEADGEYSKPVIVNKLPVAIGQRYSVI 308 **************************************************** PP AA1_3.hmm 257 veanqeeenywlraelaeaCskln........aeekeikailrYeeassaep 300 ++anq+++nyw+ra+++++C +n a + + ++il+Y++a s p 395806|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 309 IDANQKVDNYWMRATIDDRCLLINnqtvnfdsAINYNVTGILKYDGAGSGYP 360 ********************98863444444455677888999999888888 PP AA1_3.hmm 301 tskat 305 s+++ 395806|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 361 ISTEY 365 88874 PP == domain 2 score: -2.9 bits; conditional E-value: 0.67 AA1_3.hmm 99 ftYefratqyGtswYHsHyslQyadGvlGpl 129 +++++a++ G H H+ G++ +l 395806|RhiirA4_GeneCatalog_proteins_20150505.aa.fasta|AA1 513 SVFRYKADNPGVWSIHCHIEWHVEMGMIAQL 543 6789999999*999****9999999998766 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (591 residues searched) Target model(s): 4 (1310 nodes) Passed MSV filter: 4 (1); expected 0.1 (0.02) Passed bias filter: 4 (1); expected 0.1 (0.02) Passed Vit filter: 4 (1); expected 0.0 (0.001) Passed Fwd filter: 4 (1); expected 0.0 (1e-05) Initial search space (Z): 4 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: 107.87 // Query: 743557|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 [L=555] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.7e-116 377.8 3.9 2.1e-116 377.4 3.9 1.0 1 AA1.hmm 2.4e-96 310.4 0.2 3.6e-96 309.9 0.2 1.2 1 AA1_1.hmm 1.4e-93 301.6 0.7 3.9e-93 300.1 0.9 1.6 2 AA1_2.hmm 2.2e-88 284.5 1.0 3.8e-88 283.7 1.0 1.4 1 AA1_3.hmm Domain annotation for each model (and alignments): >> AA1.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 377.4 3.9 2.1e-116 2.1e-116 7 357 .. 33 501 .. 24 502 .. 0.81 Alignments for each domain: == domain 1 score: 377.4 bits; conditional E-value: 2.1e-116 AA1.hmm 7 versvilvNgqfPgPtieanegDtvvvtVtNklesegttiHwhGlrqlgtn 57 + r+++ +N q+Pg i+an+gD++++tV+N+l +t++HwhG++q+g+n 743557|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 33 FMREILSINSQYPGTMIHANKGDRLHITVRNQL-GVPTSMHWHGIQQRGSN 82 6799****************************9.89*************** PP AA1.hmm 58 waDGvagvtqcpiapgksftYeftvteqaGtywyHsHvslqyadGlrGali 108 w+DGv+g tqcpi+ g sf+Y+f++ eq GtywyH+H+ qy++Glr +li 743557|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 83 WYDGVSGQTQCPIPNGISFEYDFSTGEQQGTYWYHAHTHGQYMEGLRAPLI 133 *************************************************** PP AA1.hmm 109 irdpkske....kydvddeelvillsdwyhktaeell....kenatgaepa 151 i+dp+ + +yd ee vi++sdwyh++ +ell + n+ g +p 743557|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 134 IHDPN--DpyrkDYD---EEYVITMSDWYHQSITELLeirmSPNYGGFNPI 179 **994..43323455...999***************999865568999999 PP AA1.hmm 152 pdsllinGkgrlync.....s......sklevlkvepgktyrlrlinaaln 191 pd++li G gr+ +c + ++l+v k+++gk+yrlr++n++ 743557|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 180 PDAGLISGIGRY-DCsaappNsncqanNPLAVYKFQSGKRYRLRIMNTSGL 229 **********96.664554404555657788******************** PP AA1.hmm 192 aeltfsidnHkltvieaDgvyvkpyevdslqiapGqrydvllkanqsagny 242 +++ fsidnH l++ieaDg+y +p++v+ l +a+Gqry+v+++anq+++ny 743557|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 230 THFIFSIDNHPLKIIEADGEYSQPVTVNKLPVAIGQRYSVIVEANQQVDNY 280 *************************************************** PP AA1.hmm 243 wiraslds.....a.......afdnttalailrYkgassas.......... 271 wira++d+ + + n + ++ilrY+ga+ + 743557|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 281 WIRATIDNrclltNdstvnvnSAINYNVTGILRYEGAPITYpttteypdav 331 ****8888787751667777744688899*******654446667788899 PP AA1.hmm 272 ................................................... 271 743557|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 332 riclglapnflkslyprsipgpatdrivlnltmgidennvgrayvnnstyv 382 999999999999999999999999999998888888877766666643333 PP AA1.hmm 272 .............nvsfvepstslleaysgv.......detkaklkln... 299 n + + 743557|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 383 vdethptieklltN----------------RmtinqlpT--------Qqni 409 33333333322220................122222220........1223 PP AA1.hmm 300 .....................hp..lhghdfvvv........nfd...aed 316 hp +hgh+f+v+ +++ 743557|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 410 ysydnlngvadfyvlnanravHPfhMHGHNFYVLgtgpglvvDESmlnLV- 459 333333344444455555778*************7666554422233344. PP AA1.hmm 317 eak...rdtvavpkggwvvirfvadnpgvwllhchieaHlsmGl 357 + rdt+++ ++w v+r+++dnpg+w +hchi++H++mG+ 743557|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 460 --NpfpRDTFVLDGNSWSVFRIITDNPGIWSVHCHIDWHIEMGM 501 ..2566*************************************9 PP >> AA1_1.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 309.9 0.2 3.6e-96 3.6e-96 2 282 .. 29 328 .. 28 352 .. 0.90 Alignments for each domain: == domain 1 score: 309.9 bits; conditional E-value: 3.6e-96 AA1_1.hmm 2 spDGfsrsavlvngtfpgplitgkkgdkfkinvvneLtdetmlkstsihwh 52 +pDGf r+ +n ++pg++i+++kgd+++i+v n+L ts+hwh 743557|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 29 APDGFMREILSINSQYPGTMIHANKGDRLHITVRNQLG-----VPTSMHWH 74 7**********************************996.....579***** PP AA1_1.hmm 53 glfqkgtnwadgpafvtqCPiapgnsflydfkvpdqaGtfwYHshlstqyc 103 g+ q+g+nw dg++ tqCPi +g sf+ydf++ +q Gt+wYH+h + qy+ 743557|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 75 GIQQRGSNWYDGVSGQTQCPIPNGISFEYDFSTGEQQGTYWYHAHTHGQYM 125 *************************************************** PP AA1_1.hmm 104 dglrGalvvydpedplkslydvddestvitladwyhtaakell........ 146 +glr +l+++dp+dp+++ yd e+ vit++dwyh++ +ell 743557|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 126 EGLRAPLIIHDPNDPYRKDYD---EEYVITMSDWYHQSITELLeirmspny 173 ********************5...899**********99999889999999 PP AA1_1.hmm 147 .klvavadstlinGlgryagg.........peaelavvnvekgkrYrfrlv 187 ++ +++d++li G+gry + ++++lav + ++gkrYr+r++ 743557|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 174 gGFNPIPDAGLISGIGRYDCSaappnsncqANNPLAVYKFQSGKRYRLRIM 224 8889**************8544555555557788***************** PP AA1_1.hmm 188 siscdpnftfsidghnltvieadgvntkpltvdsiqifagqrysvvleanq 238 ++s ++f fsid+h l++ieadg+ ++p+tv+++ + gqrysv++eanq 743557|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 225 NTSGLTHFIFSIDNHPLKIIEADGEYSQPVTVNKLPVAIGQRYSVIVEANQ 275 *************************************************** PP AA1_1.hmm 239 evdnYwiranpnlgk......ntgfeggin...sailrykgapeaePttkq 280 +vdnYwira+ +++ + +++++in + ilry+gap + Ptt++ 743557|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 276 QVDNYWIRATIDNRClltndsTVNVNSAINynvTGILRYEGAPITYPTTTE 326 **********99887776666555555555222469*************98 PP AA1_1.hmm 281 ka 282 743557|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 327 YP 328 44 PP >> AA1_2.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 300.1 0.9 3.9e-93 3.9e-93 2 333 .. 35 395 .. 34 399 .. 0.91 2 ? -2.6 0.0 0.49 0.49 76 101 .. 481 506 .. 472 546 .. 0.77 Alignments for each domain: == domain 1 score: 300.1 bits; conditional E-value: 3.9e-93 AA1_2.hmm 2 rrvigvNgqwPlpeievnkgdrvevkltNgledentslHfHGlfqngtnam 52 r+++++N q+P i++nkgdr+++++ N+l +ts+H+HG+ q+g+n++ 743557|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 35 REILSINSQYPGTMIHANKGDRLHITVRNQL-GVPTSMHWHGIQQRGSNWY 84 8999***************************.78***************** PP AA1_2.hmm 53 DGasmvtqCpippgetltYeftveeqvGtYWyHsHskgqYeDGlrgpliie 103 DG+s+ tqCpip+g ++ Y+f++ eq+GtYWyH+H++gqY+ Glr+plii+ 743557|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 85 DGVSGQTQCPIPNGISFEYDFSTGEQQGTYWYHAHTHGQYMEGLRAPLIIH 135 *************************************************** PP AA1_2.hmm 104 dkeepy..eydeeltltlsdwYheeskelvkeflskynptgaepipdsllv 152 d+++py +ydee+++t+sdwYh++++el++ +s n g +pipd+ l+ 743557|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 136 DPNDPYrkDYDEEYVITMSDWYHQSITELLEIRMS-PNYGGFNPIPDAGLI 185 ******999*********************99888.5889*********** PP AA1_2.hmm 153 ..................netenatlevepgktYllriinvgafasqylvl 185 ++ a +++ gk+Y+lri+n++ ++ + +++ 743557|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 186 sgigrydcsaappnsncqANNPLAVYKFQSGKRYRLRIMNTSGLTHFIFSI 236 **************9887667778899************************ PP AA1_2.hmm 186 edhemtivevDGvdvepsevdslyiavaQRysvLvkakndtsknyalvakm 236 ++h ++i+e+DG + +p++v++l +a++QRysv+v+a+++ +ny++ a++ 743557|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 237 DNHPLKIIEADGEYSQPVTVNKLPVAIGQRYSVIVEANQQ-VDNYWIRATI 286 ************************************9765.579******* PP AA1_2.hmm 237 detmld......vvpddlqlnvtstlvydksaalaeas.....tvdeleal 276 d++ l v +++++nvt l+y+ + + ++ +v + l 743557|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 287 DNRCLLtndstvNVNSAINYNVTGILRYEGAPITYPTTteypdAVRICLGL 337 **99765677667789999999******98754433332323334444677 PP AA1_2.hmm 277 dDfkleplekeelleepdkeieldvemdnlkdgvnyaffNnitYvap.kvp 326 l++l +++ ++ +i l+++m +++v +a++Nn tYv + p 743557|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 338 APNFLKSLYPRSIPGPATDRIVLNLTMGIDENNVGRAYVNNSTYVVDeTHP 388 77889***************************************8762568 PP AA1_2.hmm 327 tlltvls 333 t+ +l+ 743557|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 389 TIEKLLT 395 8876665 PP == domain 2 score: -2.6 bits; conditional E-value: 0.49 AA1_2.hmm 76 eeqvGtYWyHsHskgqYeDGlrgpli 101 +++ G + +H+H + + e G+ + l+ 743557|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 481 TDNPGIWSVHCHIDWHIEMGMVAQLV 506 58899999999999999999988776 PP >> AA1_3.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 283.7 1.0 3.8e-88 3.8e-88 10 305 .. 13 327 .. 8 335 .. 0.91 Alignments for each domain: == domain 1 score: 283.7 bits; conditional E-value: 3.8e-88 AA1_3.hmm 10 tgvtreytlevtestlapDGvekeallvngqyPgptieadWGDtlevtvkn 60 +tr y+l +++++lapDG+ +e+l +n qyPg +i+a+ GD+l++tv+n 743557|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 13 SPITRYYELVLSRVNLAPDGFMREILSINSQYPGTMIHANKGDRLHITVRN 63 5579*********************************************** PP AA1_3.hmm 61 nlkknGtsiHwHGirqlntneqDGvpgvtqCpiapgesftYefra.tqyGt 110 +l ts+HwHGi+q +n++DGv+g tqCpi+ g sf Y+f++ +q Gt 743557|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 64 QLG-VPTSMHWHGIQQRGSNWYDGVSGQTQCPIPNGISFEYDFSTgEQQGT 113 **8.68*************************************87489*** PP AA1_3.hmm 111 swYHsHyslQyadGvlGplvinGP...asanydvdlgpllltdwshesafe 158 wYH+H Qy++G+ pl+i+ P +++yd++ +++++dw+h+s++e 743557|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 114 YWYHAHTHGQYMEGLRAPLIIHDPndpYRKDYDEE-YVITMSDWYHQSITE 163 **********************9832246889988.57899********** PP AA1_3.hmm 159 lveeae...asggppvadniLingknkvkkskk......eeegeysevkle 200 l+e + g +p+ d +Li g +++++s++ ++++ + k++ 743557|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 164 LLEIRMspnYGGFNPIPDAGLISGIGRYDCSAAppnsncQANNPLAVYKFQ 214 **999877566778****************98899999888899999**** PP AA1_3.hmm 201 kgkkyrlrlintsvdstfkfsidgHkltviaaDfvpiepyttdslligigq 251 +gk+yrlr++nts ++f fsid+H l++i+aD +p+t++ l ++igq 743557|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 215 SGKRYRLRIMNTSGLTHFIFSIDNHPLKIIEADGEYSQPVTVNKLPVAIGQ 265 *************************************************** PP AA1_3.hmm 252 RydviveanqeeenywlraelaeaCskln........aeekeikailrYee 294 Ry viveanq+++nyw+ra+++++C +n a + + ++ilrYe+ 743557|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 266 RYSVIVEANQQVDNYWIRATIDNRCLLTNdstvnvnsAINYNVTGILRYEG 316 *************************88754444454456778899999999 PP AA1_3.hmm 295 assaeptskat 305 a + pt++++ 743557|Rhice1_1_GeneCatalog_proteins_20160727.aa.fasta|AA1 317 APITYPTTTEY 327 99999999884 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (555 residues searched) Target model(s): 4 (1310 nodes) Passed MSV filter: 4 (1); expected 0.1 (0.02) Passed bias filter: 4 (1); expected 0.1 (0.02) Passed Vit filter: 4 (1); expected 0.0 (0.001) Passed Fwd filter: 4 (1); expected 0.0 (1e-05) Initial search space (Z): 4 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: 108.66 // Query: 357359|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 [L=594] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.2e-120 390.5 1.7 2.8e-120 390.1 1.7 1.0 1 AA1.hmm 3.6e-95 306.8 1.0 4.9e-95 306.4 0.2 1.6 2 AA1_2.hmm 2.1e-93 300.8 0.0 2.8e-93 300.4 0.0 1.1 1 AA1_1.hmm 1.7e-89 288.2 0.5 4.2e-89 286.8 0.2 1.7 2 AA1_3.hmm Domain annotation for each model (and alignments): >> AA1.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 390.1 1.7 2.8e-120 2.8e-120 7 357 .. 72 540 .. 60 541 .. 0.80 Alignments for each domain: == domain 1 score: 390.1 bits; conditional E-value: 2.8e-120 AA1.hmm 7 versvilvNgqfPgPtieanegDtvvvtVtNklesegttiHwhGlrqlgtnw 58 ++++++++Ngq+Pg i+an+gD+++vtV+N++ e+ iHwhG++q+gtnw 357359|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 72 FTKTIFAINGQYPGTVIHANKGDRIQVTVKNNI-GEPSVIHWHGMFQRGTNW 122 7899****************************9.89**************** PP AA1.hmm 59 aDGvagvtqcpiapgksftYeftvteqaGtywyHsHvslqyadGlrGaliir 110 +DGv+g tqcpi+ g+sf+Y+f+++eq Gt+wyH+H+ qy++G+r +lii 357359|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 123 YDGVSGQTQCPIPNGSSFVYDFSTQEQRGTFWYHAHTHGQYMEGIRAPLIIP 174 **************************************************** PP AA1.hmm 111 dpkske....kydvddeelvillsdwyhktaeell....kenatgaepapds 154 dp+ + +yd+ e +i++sdwyh+ ++++l + n+ g++p pds 357359|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 175 DPN--DpyrkDYDF---EYIITMSDWYHQRVSDMLairmSPNYGGRNPIPDS 221 994..333446775...69***************9998755699******** PP AA1.hmm 155 llinGkgrlync.....s......sklevlkvepgktyrlrlinaalnaelt 195 +li G+gr+ nc + ++l++ kv+pgk+yrlrlin++ ++++ 357359|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 222 GLISGAGRY-NCsaappGsecrenNPLAEYKVTPGKKYRLRLINTSGLSHFM 272 ********6.674555505565657788************************ PP AA1.hmm 196 fsidnHkltvieaDgvyvkpyevdslqiapGqrydvllkanqsagnywiras 247 fsidnH l++ieaDg+y kp+ v+ l +a+Gqry+v+++anq+++nyw+ra+ 357359|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 273 FSIDNHPLKIIEADGEYSKPVIVNKLPVAIGQRYSVIIDANQKVDNYWMRAT 324 ***************************************************9 PP AA1.hmm 248 lds.....a.......afdnttalailrYkg........assas........ 271 +d+ + + n + ++il+Y+g + + 357359|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 325 IDDrclliNnqtvnfdSAINYNVTGILKYDGaglgyptsT---Eypdqlepc 373 998787661567867644678889*****99888776540...155667777 PP AA1.hmm 272 ...........................................nvsfvep.s 279 n sfv + 357359|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 374 lsidpnllktlepqqipgpatnkiqlvvtfrdddqnvtrafinNSSFVVDdN 425 7777788888888888888888888855555555544444444444422213 PP AA1.hmm 280 tslleaysgvdetka........klkln........................ 299 ++le+ + +++ n 357359|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 426 NPTLEK--------FvsddvpldQFPANqniyaydqlggtidiayinnnsai 469 333343........03333333322222445555555566666677888999 PP AA1.hmm 300 hp..lhghdfvvv......nfdaedeak........rdtvavpkggwvvirf 335 hp +hgh+f+v+ de+k rdt++v++ +w v+r+ 357359|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 470 HPihMHGHNFYVLgtgsgiV---VDESKlnlvdpfpRDTFVVNSTSWSVFRY 518 *************7644440...4444445566677**************** PP AA1.hmm 336 vadnpgvwllhchieaHlsmGl 357 +adnpgvw +hchie+H++mG+ 357359|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 519 KADNPGVWSIHCHIEWHVEMGM 540 *********************9 PP >> AA1_2.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 306.4 0.2 4.9e-95 4.9e-95 2 332 .. 74 433 .. 73 437 .. 0.91 2 ? -2.8 0.0 0.56 0.56 72 101 .. 517 545 .. 507 550 .. 0.78 Alignments for each domain: == domain 1 score: 306.4 bits; conditional E-value: 4.9e-95 AA1_2.hmm 2 rrvigvNgqwPlpeievnkgdrvevkltNgledentslHfHGlfqngtnamD 53 +++ ++Ngq+P +i++nkgdr++v+++N++ e++ +H+HG+fq+gtn++D 357359|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 74 KTIFAINGQYPGTVIHANKGDRIQVTVKNNI-GEPSVIHWHGMFQRGTNWYD 124 67789**************************.56999*************** PP AA1_2.hmm 54 GasmvtqCpippgetltYeftveeqvGtYWyHsHskgqYeDGlrgpliiedk 105 G+s+ tqCpip+g++++Y+f+++eq Gt+WyH+H++gqY+ G+r+plii d+ 357359|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 125 GVSGQTQCPIPNGSSFVYDFSTQEQRGTFWYHAHTHGQYMEGIRAPLIIPDP 176 **************************************************** PP AA1_2.hmm 106 eepy..eydeeltltlsdwYheeskelvkeflskynptgaepipdsllv... 152 ++py +yd e+++t+sdwYh++++++++ +s n g +pipds l+ 357359|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 177 NDPYrkDYDFEYIITMSDWYHQRVSDMLAIRMS-PNYGGRNPIPDSGLIsga 227 ****999*********************99888.6889************** PP AA1_2.hmm 153 ...............netenatlevepgktYllriinvgafasqylvledhe 189 +++ a+ +v+pgk+Y+lr+in++ ++ +++++++h 357359|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 228 gryncsaappgsecrENNPLAEYKVTPGKKYRLRLINTSGLSHFMFSIDNHP 279 **************999999******************************** PP AA1_2.hmm 190 mtivevDGvdvepsevdslyiavaQRysvLvkakndtsknyalvakmdetml 241 ++i+e+DG + +p+ v++l +a++QRysv++ a+++ +ny++ a++d++ l 357359|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 280 LKIIEADGEYSKPVIVNKLPVAIGQRYSVIIDANQK-VDNYWMRATIDDRCL 330 ********************************9765.579*********997 PP AA1_2.hmm 242 d......vvpddlqlnvtstlvydksa.alaeas....tvdelealdDfkle 282 +++++nvt l+yd + ++++ +++ + ++d l+ 357359|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 331 LinnqtvNFDSAINYNVTGILKYDGAGlGYPTSTeypdQLEPCLSIDPNLLK 382 655664455688999********9875133333343445677799******* PP AA1_2.hmm 283 plekeelleepdkeieldvemdnlkdgvnyaffNnitYvap.kvptlltvl 332 +le +++ ++++i+l v+++ +++v++af+Nn ++v + ptl + 357359|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 383 TLEPQQIPGPATNKIQLVVTFRDDDQNVTRAFINNSSFVVDdNNPTLEKFV 433 **************************************8652789987665 PP == domain 2 score: -2.8 bits; conditional E-value: 0.56 AA1_2.hmm 72 eftveeqvGtYWyHsHskgqYeDGlrgpli 101 ++++ ++ G + +H+H + + e G+ + li 357359|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 517 RYKA-DNPGVWSIHCHIEWHVEMGMIAQLI 545 4445.7899999****99999999877776 PP >> AA1_1.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 300.4 0.0 2.8e-93 2.8e-93 2 302 .. 68 391 .. 67 392 .. 0.89 Alignments for each domain: == domain 1 score: 300.4 bits; conditional E-value: 2.8e-93 AA1_1.hmm 2 spDGfsrsavlvngtfpgplitgkkgdkfkinvvneLtdetmlkstsihwhg 53 +pDGf+++ +ng++pg++i+++kgd+++++v+n++ +++ ihwhg 357359|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 68 APDGFTKTIFAINGQYPGTVIHANKGDRIQVTVKNNIGEPS-----VIHWHG 114 7**********************************999876.....59**** PP AA1_1.hmm 54 lfqkgtnwadgpafvtqCPiapgnsflydfkvpdqaGtfwYHshlstqycdg 105 +fq+gtnw dg++ tqCPi +g+sf+ydf++++q GtfwYH+h + qy++g 357359|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 115 MFQRGTNWYDGVSGQTQCPIPNGSSFVYDFSTQEQRGTFWYHAHTHGQYMEG 166 **************************************************** PP AA1_1.hmm 106 lrGalvvydpedplkslydvddestvitladwyhtaakell.........kl 148 +r +l++ dp+dp+++ yd++ +it++dwyh+ +++l + 357359|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 167 IRAPLIIPDPNDPYRKDYDFE---YIITMSDWYHQRVSDMLairmspnygGR 215 ******************996...7***********9999889999988878 PP AA1_1.hmm 149 vavadstlinGlgryagg.........peaelavvnvekgkrYrfrlvsisc 191 +++ds+li G gry+ + ++++la +v+ gk+Yr+rl+++s 357359|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 216 NPIPDSGLISGAGRYNCSaappgsecrENNPLAEYKVTPGKKYRLRLINTSG 267 89*************9655666677767889********************* PP AA1_1.hmm 192 dpnftfsidghnltvieadgvntkpltvdsiqifagqrysvvleanqevdnY 243 ++f+fsid+h l++ieadg+ +kp+ v+++ + gqrysv+++anq+vdnY 357359|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 268 LSHFMFSIDNHPLKIIEADGEYSKPVIVNKLPVAIGQRYSVIIDANQKVDNY 319 **************************************************** PP AA1_1.hmm 244 wiranpnlgk......ntgfeggin...sailrykgapeaePttkq.kastn 285 w+ra+ + + + +f+++in + il+y+ga Pt+++ ++ + 357359|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 320 WMRATIDDRCllinnqTVNFDSAINynvTGILKYDGAGLGYPTSTEyPDQLE 371 *****99876777766788999988333479************998533333 PP AA1_1.hmm 286 p...LkeanlhplvaeaaPg 302 p ++ + l++l+ ++ Pg 357359|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 372 PclsIDPNLLKTLEPQQIPG 391 31114444566666666665 PP >> AA1_3.hmm # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 286.8 0.2 4.2e-89 4.2e-89 10 305 .. 52 366 .. 46 373 .. 0.89 2 ? -2.6 0.0 0.55 0.55 99 129 .. 514 544 .. 508 549 .. 0.85 Alignments for each domain: == domain 1 score: 286.8 bits; conditional E-value: 4.2e-89 AA1_3.hmm 10 tgvtreytlevtestlapDGvekeallvngqyPgptieadWGDtlevtvknn 61 + +tr+y++e+++ +lapDG++k+++++ngqyPg +i+a+ GD+++vtvknn 357359|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 52 NPITRSYEVELSQINLAPDGFTKTIFAINGQYPGTVIHANKGDRIQVTVKNN 103 5689************************************************ PP AA1_3.hmm 62 lkknGtsiHwHGirqlntneqDGvpgvtqCpiapgesftYefra.tqyGtsw 112 + + + iHwHG+ q tn++DGv+g tqCpi+ g+sf+Y+f++ +q Gt w 357359|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 104 IG-EPSVIHWHGMFQRGTNWYDGVSGQTQCPIPNGSSFVYDFSTqEQRGTFW 154 *8.5688***********************************872589**** PP AA1_3.hmm 113 YHsHyslQyadGvlGplvinGP...asanydvdlgpllltdwshesafelve 161 YH+H Qy++G+ pl+i P +++yd + ++++dw+h+ ++++++ 357359|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 155 YHAHTHGQYMEGIRAPLIIPDPndpYRKDYDFEY-IITMSDWYHQRVSDMLA 205 *******************766211567888774.6889**********999 PP AA1_3.hmm 162 eae...asggppvadniLingknkvkkskk......eeegeysevklekgkk 204 + g++p+ d++Li g +++++s++ +e++ +e k+++gkk 357359|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 206 IRMspnYGGRNPIPDSGLISGAGRYNCSAAppgsecRENNPLAEYKVTPGKK 257 88877667788****************9889**99989999*********** PP AA1_3.hmm 205 yrlrlintsvdstfkfsidgHkltviaaDfvpiepyttdslligigqRydvi 256 yrlrlints s+f+fsid+H l++i+aD +p+ ++ l ++igqRy vi 357359|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 258 YRLRLINTSGLSHFMFSIDNHPLKIIEADGEYSKPVIVNKLPVAIGQRYSVI 309 **************************************************** PP AA1_3.hmm 257 veanqeeenywlraelaeaCskln........aeekeikailrYeeassaep 300 ++anq+++nyw+ra+++++C +n a + + ++il+Y++a p 357359|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 310 IDANQKVDNYWMRATIDDRCLLINnqtvnfdsAINYNVTGILKYDGAGLGYP 361 ********************98863334444445667778888888888888 PP AA1_3.hmm 301 tskat 305 ts+++ 357359|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 362 TSTEY 366 87764 PP == domain 2 score: -2.6 bits; conditional E-value: 0.55 AA1_3.hmm 99 ftYefratqyGtswYHsHyslQyadGvlGpl 129 +++++a++ G H H+ G++ +l 357359|RhiirA5_GeneCatalog_proteins_20150706.aa.fasta|AA1 514 SVFRYKADNPGVWSIHCHIEWHVEMGMIAQL 544 678999******99*****999999998776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (594 residues searched) Target model(s): 4 (1310 nodes) Passed MSV filter: 4 (1); expected 0.1 (0.02) Passed bias filter: 4 (1); expected 0.1 (0.02) Passed Vit filter: 4 (1); expected 0.0 (0.001) Passed Fwd filter: 4 (1); expected 0.0 (1e-05) Initial search space (Z): 4 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: 111.75 // [ok]