##gff-version 3 ##sequence-region NC_004663 1 16573 # conversion-by bp_genbank2gff3.pl # organism Bacteroides thetaiotaomicron VPI-5482 # Note Bacteroides thetaiotaomicron VPI-5482, complete sequence. # date 21-AUG-2022 NC_004663 GenBank region 1 16573 . + 1 ID=NC_004663;Dbxref=BioProject:PRJNA224116,taxon:226186;Name=NC_004663;Note=Bacteroides thetaiotaomicron VPI-5482%2C complete sequence.,REFSEQ INFORMATION: The reference sequence is identical to AE015928.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ \n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 08/21/2022 09:52:22\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\nset,GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene,CDS,rRNA,tRNA,ncRNA,\nrepeat_region\nGenes (total) :: 4,877\nCDSs (total) :: 4,790\nGenes (coding) :: 4,695\nCDSs (with protein) :: 4,695\nGenes (RNA) :: 87\nrRNAs :: 5,5,5 (5S,16S,23S)\ncomplete rRNAs :: 5,5,5 (5S,16S,23S)\ntRNAs :: 70\nncRNAs :: 2\nPseudo Genes (total) :: 95\nCDSs (without protein) :: 95\nPseudo Genes (ambiguous residues) :: 0 of 95\nPseudo Genes (frameshifted) :: 45 of 95\nPseudo Genes (incomplete) :: 49 of 95\nPseudo Genes (internal stop) :: 20 of 95\nPseudo Genes (multiple problems) :: 15 of 95\n##Genome-Annotation-Data-END##;comment1=REFSEQ INFORMATION: The reference sequence is identical to AE015928.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ \n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 08/21/2022 09:52:22\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\nset%3B GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene%3B CDS%3B rRNA%3B tRNA%3B ncRNA%3B\nrepeat_region\nGenes (total) :: 4%2C877\nCDSs (total) :: 4%2C790\nGenes (coding) :: 4%2C695\nCDSs (with protein) :: 4%2C695\nGenes (RNA) :: 87\nrRNAs :: 5%2C 5%2C 5 (5S%2C 16S%2C 23S)\ncomplete rRNAs :: 5%2C 5%2C 5 (5S%2C 16S%2C 23S)\ntRNAs :: 70\nncRNAs :: 2\nPseudo Genes (total) :: 95\nCDSs (without protein) :: 95\nPseudo Genes (ambiguous residues) :: 0 of 95\nPseudo Genes (frameshifted) :: 45 of 95\nPseudo Genes (incomplete) :: 49 of 95\nPseudo Genes (internal stop) :: 20 of 95\nPseudo Genes (multiple problems) :: 15 of 95\n##Genome-Annotation-Data-END##;date=21-AUG-2022;mol_type=genomic DNA;organism=Bacteroides thetaiotaomicron VPI-5482;strain=VPI-5482;type_material=type strain of Bacteroides thetaiotaomicron NC_004663 GenBank gene 1 1587 . - 1 ID=BT_RS15430;Name=BT_RS15430;old_locus_tag=BT3043,BT_3043 NC_004663 GenBank mRNA 1 1587 . - 1 ID=BT_RS15430.t01;Parent=BT_RS15430 NC_004663 GenBank CDS 1 1587 . - 1 ID=BT_RS15430;Parent=BT_RS15430.t01;Name=BT_RS15430;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008761743.1;old_locus_tag=BT3043,BT_3043;product=glycoside hydrolase family 30 protein;protein_id=WP_011108604.1;transl_table=11;translation=length.528 NC_004663 GenBank exon 1 1587 . - 1 Parent=BT_RS15430.t01 NC_004663 GenBank gene 1839 2726 . - 1 ID=BT_RS15435;Name=BT_RS15435;old_locus_tag=BT3044,BT_3044 NC_004663 GenBank mRNA 1839 2726 . - 1 ID=BT_RS15435.t01;Parent=BT_RS15435 NC_004663 GenBank CDS 1839 2726 . - 1 ID=BT_RS15435;Parent=BT_RS15435.t01;Name=BT_RS15435;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008767316.1;old_locus_tag=BT3044,BT_3044;product=DUF4361 domain-containing protein;protein_id=WP_008767316.1;transl_table=11;translation=length.295 NC_004663 GenBank exon 1839 2726 . - 1 Parent=BT_RS15435.t01 NC_004663 GenBank gene 2775 4757 . - 1 ID=BT_RS15440;Name=BT_RS15440;old_locus_tag=BT3045,BT_3045 NC_004663 GenBank mRNA 2775 4757 . - 1 ID=BT_RS15440.t01;Parent=BT_RS15440 NC_004663 GenBank CDS 2775 4757 . - 1 ID=BT_RS15440;Parent=BT_RS15440.t01;Name=BT_RS15440;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008767317.1;old_locus_tag=BT3045,BT_3045;product=RagB/SusD family nutrient uptake outer membrane protein;protein_id=WP_008767317.1;transl_table=11;translation=length.660 NC_004663 GenBank exon 2775 4757 . - 1 Parent=BT_RS15440.t01 NC_004663 GenBank gene 4797 7892 . - 1 ID=BT_RS15445;Name=BT_RS15445;old_locus_tag=BT3046,BT_3046 NC_004663 GenBank mRNA 4797 7892 . - 1 ID=BT_RS15445.t01;Parent=BT_RS15445 NC_004663 GenBank CDS 4797 7892 . - 1 ID=BT_RS15445;Parent=BT_RS15445.t01;Name=BT_RS15445;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011108605.1;old_locus_tag=BT3046,BT_3046;product=TonB-dependent receptor;protein_id=WP_011108605.1;transl_table=11;translation=length.1031 NC_004663 GenBank exon 4797 7892 . - 1 Parent=BT_RS15445.t01 NC_004663 GenBank gene 7915 9216 . - 1 ID=BT_RS15450;Name=BT_RS15450;old_locus_tag=BT3047,BT_3047 NC_004663 GenBank mRNA 7915 9216 . - 1 ID=BT_RS15450.t01;Parent=BT_RS15450 NC_004663 GenBank CDS 7915 9216 . - 1 ID=BT_RS15450;Parent=BT_RS15450.t01;Name=BT_RS15450;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008767319.1;old_locus_tag=BT3047,BT_3047;product=IPT/TIG domain-containing protein;protein_id=WP_008767319.1;transl_table=11;translation=length.433 NC_004663 GenBank exon 7915 9216 . - 1 Parent=BT_RS15450.t01 NC_004663 GenBank gene 9571 12258 . - 1 ID=BT_RS15455;Name=BT_RS15455;old_locus_tag=BT3048,BT_3048 NC_004663 GenBank mRNA 9571 12258 . - 1 ID=BT_RS15455.t01;Parent=BT_RS15455 NC_004663 GenBank CDS 9571 12258 . - 1 ID=BT_RS15455;Parent=BT_RS15455.t01;Name=BT_RS15455;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016269097.1;old_locus_tag=BT3048,BT_3048;product=hypothetical protein;protein_id=WP_011108606.1;transl_table=11;translation=length.895 NC_004663 GenBank exon 9571 12258 . - 1 Parent=BT_RS15455.t01 NC_004663 GenBank gene 12443 16573 . + 1 ID=BT_RS15460;Name=BT_RS15460;old_locus_tag=BT3049,BT_3049 NC_004663 GenBank mRNA 12443 16573 . + 1 ID=BT_RS15460.t01;Parent=BT_RS15460 NC_004663 GenBank CDS 12443 16573 . + 1 ID=BT_RS15460;Parent=BT_RS15460.t01;eC_number=2.7.13.3;Name=BT_RS15460;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016269098.1;old_locus_tag=BT3049,BT_3049;product=hybrid sensor histidine kinase/response regulator transcription factor;protein_id=WP_011108607.1;transl_table=11;translation=length.1376 NC_004663 GenBank exon 12443 16573 . + 1 Parent=BT_RS15460.t01 NC_004663 GenBank gene 16542 16573 . - 1 ID=BT_RS15465;Name=BT_RS15465;old_locus_tag=BT3050,BT_3050 NC_004663 GenBank mRNA 16542 16573 . - 1 ID=BT_RS15465.t01;Parent=BT_RS15465 NC_004663 GenBank CDS 16542 16573 . - 1 ID=BT_RS15465;Parent=BT_RS15465.t01;Name=BT_RS15465;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=3;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004298476.1;old_locus_tag=BT3050,BT_3050;product=glycoside hydrolase family 18 protein;protein_id=WP_008767322.1;transl_table=11;translation=length.321 NC_004663 GenBank exon 16542 16573 . - 1 Parent=BT_RS15465.t01