##gff-version 3
##sequence-region CR626927 1 8827
# conversion-by bp_genbank2gff3.pl
# organism Bacteroides fragilis NCTC 9343
# Note Bacteroides fragilis NCTC 9343, complete genome.
# date 06-FEB-2015
CR626927	GenBank	region	1	8827	.	+	1	ID=CR626927;Dbxref=BioProject:PRJNA46,taxon:272559;Name=CR626927;Note=Bacteroides fragilis NCTC 9343%2C complete genome.,Accession number for plasmid pBF9343 in this genome project: CR626928. ;comment1=Accession number for plasmid pBF9343 in this genome project: CR626928. ;culture_collection=ATCC:25285,NCTC:9343;date=06-FEB-2015;mol_type=genomic DNA;organism=Bacteroides fragilis NCTC 9343;type_material=type strain of Bacteroides fragilis
CR626927	GenBank	region	1	8824	.	+	1	ID=GenBank:region:CR626927:1:8824;Note=short region involved with PS synthesis
CR626927	GenBank	gene	1	126	.	+	1	ID=BF9343_4184;Name=BF9343_4184
CR626927	GenBank	gene_component_region	1	69	.	+	1	Parent=BF9343_4184;Name=BF9343_4184;Note=11 probable transmembrane helices predicted for BF4298 by TMHMM2.0 at aa 39-61%2C 71-90%2C 110-132%2C 142-164%2C 177-199%2C 204-221%2C 320-342%2C 352-374%2C 405-427%2C 442-461 and 466-488
CR626927	GenBank	mRNA	1	126	.	+	1	ID=BF9343_4184.t01;Parent=BF9343_4184
CR626927	GenBank	CDS	1	126	.	+	1	ID=BF9343_4184.p01;Parent=BF9343_4184.t01;Dbxref=EnsemblGenomes-Gn:BF9343_4184,EnsemblGenomes-Tr:CAH09965,GOA:Q5L7I7,InterPro:IPR002797,UniProtKB/TrEMBL:Q5L7I7;Name=BF9343_4184;Note=Similar to Escherichia coli O-antigen repeat unit transporter Wzx SWALL:Q9RP63 (EMBL:AF172324) (473 aa) fasta scores: E(): 8.4e-40%2C 27.96%25 id in 472 aa%2C and to Bacteroides thetaiotaomicron putative transmembrane transport protein%2C putative lipopolysaccharide biosynthesis protein BT2934 SWALL:Q8A3M0 (EMBL:AE016938) (482 aa) fasta scores: E(): 4.7e-108%2C 54.41%25 id in 476 aa%2C and to Bacteroides thetaiotaomicron putative lipopolysaccharide biosynthesis protein BT1717 SWALL:Q8A708 (EMBL:AE016933) (494 aa) fasta scores: E(): 1.9e-47%2C 31.94%25 id in 479 aa;codon_start=1;old_locus_tag=BF4298;product=putative O-antigen repeat unit transporter;protein_id=CAH09965.1;transl_table=11;translation=length.481
CR626927	GenBank	exon	1	126	.	+	1	Parent=BF9343_4184.t01
CR626927	GenBank	gene	130	1317	.	+	1	ID=BF9343_4185;Name=BF9343_4185
CR626927	GenBank	gene_component_region	739	1242	.	+	1	Parent=BF9343_4185;Name=BF9343_4185;Note=Pfam match to entry PF00534 Glycos_transf_1%2C Glycosyl transferases group 1%2C score 112.1%2C E-value 9.2e-31
CR626927	GenBank	mRNA	130	1317	.	+	1	ID=BF9343_4185.t01;Parent=BF9343_4185
CR626927	GenBank	CDS	130	1317	.	+	1	ID=BF9343_4185.p01;Parent=BF9343_4185.t01;Dbxref=EnsemblGenomes-Gn:BF9343_4185,EnsemblGenomes-Tr:CAH09966,GOA:Q5L7I6,InterPro:IPR001296,UniProtKB/TrEMBL:Q5L7I6;Name=BF9343_4185;Note=Similar to Yersinia enterocolitica LPS biosynthesis WbcM protein SWALL:Q56916 (EMBL:Z47767) (358 aa) fasta scores: E(): 2.8e-10%2C 27.47%25 id in 222 aa%2C and to Bacteroides thetaiotaomicron putative glycosyltransferase hi1698 BT1352 SWALL:AAO76459 (EMBL:AE016931) (389 aa) fasta scores: E(): 7.6e-24%2C 28.77%25 id in 351 aa%2C and to Bacteroides thetaiotaomicron putative glycosyltransferase BT1180 SWALL:AAO76287 (EMBL:AE016930) (384 aa) fasta scores: E(): 1.4e-15%2C 27.92%25 id in 333 aa;codon_start=1;old_locus_tag=BF4299;product=putative glycosyltransferase;protein_id=CAH09966.1;transl_table=11;translation=length.395
CR626927	GenBank	exon	130	1317	.	+	1	Parent=BF9343_4185.t01
CR626927	GenBank	gene	1327	2337	.	+	1	ID=BF9343_4186;Name=BF9343_4186
CR626927	GenBank	mRNA	1327	2337	.	+	1	ID=BF9343_4186.t01;Parent=BF9343_4186
CR626927	GenBank	CDS	1327	2337	.	+	1	ID=BF9343_4186.p01;Parent=BF9343_4186.t01;Dbxref=EnsemblGenomes-Gn:BF9343_4186,EnsemblGenomes-Tr:CAH09967,UniProtKB/TrEMBL:Q5L7I5;Name=BF9343_4186;Note=Similar to Methylobacillus sp. 12S exopolysaccharide biosynthesis protein EpsR SWALL:BAC55146 (EMBL:AB062506) (312 aa) fasta scores: E(): 3.6e-05%2C 21.51%25 id in 237 aa;codon_start=1;old_locus_tag=BF4300;product=putative exopolysaccharide biosynthesis protein;protein_id=CAH09967.1;transl_table=11;translation=length.336
CR626927	GenBank	exon	1327	2337	.	+	1	Parent=BF9343_4186.t01
CR626927	GenBank	gene	2337	3536	.	+	1	ID=BF9343_4187;Name=BF9343_4187
CR626927	GenBank	gene_component_region	2958	3464	.	+	1	Parent=BF9343_4187;Name=BF9343_4187;Note=Pfam match to entry PF00534 Glycos_transf_1%2C Glycosyl transferases group 1%2C score 138.2%2C E-value 1.3e-38
CR626927	GenBank	mRNA	2337	3536	.	+	1	ID=BF9343_4187.t01;Parent=BF9343_4187
CR626927	GenBank	CDS	2337	3536	.	+	1	ID=BF9343_4187.p01;Parent=BF9343_4187.t01;Dbxref=EnsemblGenomes-Gn:BF9343_4187,EnsemblGenomes-Tr:CAH09968,GOA:Q5L7I4,InterPro:IPR001296,UniProtKB/TrEMBL:Q5L7I4;Name=BF9343_4187;Note=Similar to Shigella dysenteriae galactosyltransferase RfpB SWALL:Q53452 (EMBL:S73325) (377 aa) fasta scores: E(): 2.6e-07%2C 25.11%25 id in 223 aa%2C and to Bacteroides thetaiotaomicron putative glycosyltransferase BT2938 SWALL:AAO78044 (EMBL:AE016938) (408 aa) fasta scores: E(): 4e-125%2C 75.43%25 id in 399 aa%2C and to Clostridium perfringens probable hexosyltransferase CPE0499 SWALL:Q8XN39 (EMBL:AP003187) (375 aa) fasta scores: E(): 5.4e-14%2C 27.77%25 id in 252 aa;codon_start=1;old_locus_tag=BF4301;product=putative glycosyltransferase;protein_id=CAH09968.1;transl_table=11;translation=length.399
CR626927	GenBank	exon	2337	3536	.	+	1	Parent=BF9343_4187.t01
CR626927	GenBank	gene	3605	4252	.	+	1	ID=BF9343_4188;Name=BF9343_4188
CR626927	GenBank	gene_component_region	3614	3682	.	+	1	Parent=BF9343_4188;Name=BF9343_4188;Note=1 probable transmembrane helix predicted for BF4302 by TMHMM2.0 at aa 4-26
CR626927	GenBank	mRNA	3605	4252	.	+	1	ID=BF9343_4188.t01;Parent=BF9343_4188
CR626927	GenBank	CDS	3605	4252	.	+	1	ID=BF9343_4188.p01;Parent=BF9343_4188.t01;Dbxref=EnsemblGenomes-Gn:BF9343_4188,EnsemblGenomes-Tr:CAH09969,GOA:Q5L7I3,UniProtKB/TrEMBL:Q5L7I3;Name=BF9343_4188;Note=no significant database matches;codon_start=1;old_locus_tag=BF4302;product=putative transmembrane protein;protein_id=CAH09969.1;transl_table=11;translation=length.215
CR626927	GenBank	exon	3605	4252	.	+	1	Parent=BF9343_4188.t01
CR626927	GenBank	gene	4304	5434	.	-	1	ID=BF9343_4189;Name=BF9343_4189
CR626927	GenBank	gene_component_region	4310	5371	.	-	1	Parent=BF9343_4189;Name=BF9343_4189;Note=Pfam match to entry PF02350 Epimerase_2%2C UDP-N-acetylglucosamine 2-epimerase%2C score 567.3%2C E-value 8.3e-168
CR626927	GenBank	mRNA	4304	5434	.	-	1	ID=BF9343_4189.t01;Parent=BF9343_4189
CR626927	GenBank	CDS	4304	5434	.	-	1	ID=BF9343_4189.p01;Parent=BF9343_4189.t01;Dbxref=EnsemblGenomes-Gn:BF9343_4189,EnsemblGenomes-Tr:CAH09970,GOA:Q5L7I2,InterPro:IPR003331,InterPro:IPR029767,UniProtKB/TrEMBL:Q5L7I2;eC_number=5.1.3.14;Name=BF9343_4189;Note=Similar to Salmonella typhimurium UDP-N-acetylglucosamine 2-epimerase WecB or RffE or STM3920 or STMd1.70 SWALL:WECB_SALTY (SWALL:Q9L6R5) (376 aa) fasta scores: E(): 2.4e-85%2C 61.29%25 id in 372 aa%2C and to Bacteroides thetaiotaomicron putative UDP-N-acetylglucosamine 2-epimerase BT2944 SWALL:AAO78050 (EMBL:AE016938) (376 aa) fasta scores: E(): 1.8e-125%2C 88.77%25 id in 374 aa%2C and to Acinetobacter lwoffii putative UDP-N-acetylglucosamine 2-epimerase WeeA SWALL:Q9RMD6 (EMBL:AJ243431) (376 aa) fasta scores: E(): 2.6e-86%2C 60.9%25 id in 376 aa;codon_start=1;old_locus_tag=BF4303;product=putative UDP-N-acetylglucosamine 2-epimerase;protein_id=CAH09970.1;transl_table=11;translation=length.376
CR626927	GenBank	exon	4304	5434	.	-	1	Parent=BF9343_4189.t01
CR626927	GenBank	gene	5489	6691	.	-	1	ID=BF9343_4190;Name=BF9343_4190
CR626927	GenBank	gene_component_region	5507	5761	.	-	1	Parent=BF9343_4190;Name=BF9343_4190;Note=Pfam match to entry PF03720 UDPG_MGDP_dh_C%2C UDP-glucose/GDP-mannose dehydrogenase family%2C UDP binding domain%2C score 59.3%2C E-value 7.3e-15
CR626927	GenBank	gene_component_region	5837	6109	.	-	1	Parent=BF9343_4190;Name=BF9343_4190;Note=Pfam match to entry PF00984 UDPG_MGDP_dh%2C UDP-glucose/GDP-mannose dehydrogenase family%2C central domain%2C score 130.2%2C E-value 3.1e-36
CR626927	GenBank	gene_component_region	6131	6688	.	-	1	Parent=BF9343_4190;Name=BF9343_4190;Note=Pfam match to entry PF03721 UDPG_MGDP_dh_N%2C UDP-glucose/GDP-mannose dehydrogenase family%2C NAD binding domain%2C score 236.4%2C E-value 3.5e-68
CR626927	GenBank	gene_component_region	6632	6691	.	-	1	Parent=BF9343_4190;Name=BF9343_4190;Note=Signal peptide predicted for BF4304 by SignalP 2.0 HMM (Signal peptide probability 0.989) with cleavage site probability 0.925 between residues 20 and 21
CR626927	GenBank	mRNA	5489	6691	.	-	1	ID=BF9343_4190.t01;Parent=BF9343_4190
CR626927	GenBank	CDS	5489	6691	.	-	1	ID=BF9343_4190.p01;Parent=BF9343_4190.t01;Dbxref=EnsemblGenomes-Gn:BF9343_4190,EnsemblGenomes-Tr:CAH09971,GOA:Q5L7I1,InterPro:IPR001732,InterPro:IPR008927,InterPro:IPR014026,InterPro:IPR014027,InterPro:IPR016040,InterPro:IPR017476,InterPro:IPR028359,UniProtKB/TrEMBL:Q5L7I1;Name=BF9343_4190;Note=Similar to Escherichia coli UDP-N-acetyl-D-mannosamine dehydrogenase WecC or RffD or b3787 SWALL:WECC_ECOLI (SWALL:P27829) (420 aa) fasta scores: E(): 2.6e-75%2C 54.56%25 id in 394 aa%2C and to Bacteroides thetaiotaomicron UDP-N-acetyl-D-mannosamine dehydrogenase BT2945 SWALL:AAO78051 (EMBL:AE016938) (400 aa) fasta scores: E(): 1.3e-139%2C 89%25 id in 400 aa%2C and to Bacteroides fragilis UDP-ManNAc dehydrogenase MnaB SWALL:Q9RGJ9 (EMBL:AF125164) (408 aa) fasta scores: E(): 7.1e-101%2C 65.65%25 id in 396 aa;codon_start=1;old_locus_tag=BF4304;product=putative UDP-N-acetyl-D-mannosamine dehydrogenase;protein_id=CAH09971.1;transl_table=11;translation=length.400
CR626927	GenBank	exon	5489	6691	.	-	1	Parent=BF9343_4190.t01
CR626927	GenBank	gene	6796	8061	.	+	1	ID=BF9343_4191;Name=BF9343_4191
CR626927	GenBank	gene_component_region	7474	7983	.	+	1	Parent=BF9343_4191;Name=BF9343_4191;Note=Pfam match to entry PF00534 Glycos_transf_1%2C Glycosyl transferases group 1%2C score 113.0%2C E-value 5e-31
CR626927	GenBank	mRNA	6796	8061	.	+	1	ID=BF9343_4191.t01;Parent=BF9343_4191
CR626927	GenBank	CDS	6796	8061	.	+	1	ID=BF9343_4191.p01;Parent=BF9343_4191.t01;Dbxref=EnsemblGenomes-Gn:BF9343_4191,EnsemblGenomes-Tr:CAH09972,GOA:Q5L7I0,InterPro:IPR001296,UniProtKB/TrEMBL:Q5L7I0;Name=BF9343_4191;Note=Similar to Vibrio cholerae O37 glysosyl-transferase SWALL:Q8L354 (EMBL:AF390573) (409 aa) fasta scores: E(): 3.5e-21%2C 24.1%25 id in 419 aa%2C and to Bacteroides thetaiotaomicron putative glycosyltransferase BT2946 SWALL:Q8A3K8 (EMBL:AE016938) (421 aa) fasta scores: E(): 7.5e-143%2C 80.99%25 id in 421 aa%2C and to Anabaena sp. hypothetical protein ALL4426 SWALL:Q8YNY3 (EMBL:AP003596) (417 aa) fasta scores: E(): 3.8e-43%2C 34.98%25 id in 423 aa;codon_start=1;old_locus_tag=BF4305;product=putative glycosyltransferase;protein_id=CAH09972.1;transl_table=11;translation=length.421
CR626927	GenBank	exon	6796	8061	.	+	1	Parent=BF9343_4191.t01
CR626927	GenBank	gene	8054	8827	.	+	1	ID=BF9343_4192;Name=BF9343_4192
CR626927	GenBank	gene_component_region	8081	8566	.	+	1	Parent=BF9343_4192;Name=BF9343_4192;Note=Pfam match to entry PF00535 Glycos_transf_2%2C Glycosyl transferase%2C score 107.5%2C E-value 2.2e-29
CR626927	GenBank	mRNA	8054	8827	.	+	1	ID=BF9343_4192.t01;Parent=BF9343_4192
CR626927	GenBank	CDS	8054	8827	.	+	1	ID=BF9343_4192.p01;Parent=BF9343_4192.t01;Dbxref=EnsemblGenomes-Gn:BF9343_4192,EnsemblGenomes-Tr:CAH09973,GOA:Q5L7H9,InterPro:IPR001173,InterPro:IPR029044,UniProtKB/TrEMBL:Q5L7H9;Name=BF9343_4192;Note=Similar to Methanosarcina mazei glycosyltransferase involved in cell wall biogenesis MM0653 SWALL:Q8PZ41 (EMBL:AE013290) (248 aa) fasta scores: E(): 1.6e-22%2C 32.52%25 id in 246 aa%2C and to Bacteroides thetaiotaomicron putative glycosyltransferase BT2947 SWALL:AAO78053 (EMBL:AE016938) (251 aa) fasta scores: E(): 8.1e-83%2C 81.14%25 id in 244 aa%2C and to Helicobacter pylori J99 putative jhp0094 SWALL:Q9ZMX1 (EMBL:AE001448) (260 aa) fasta scores: E(): 7.5e-22%2C 37.03%25 id in 216 aa. CDS overlapping 20 amino acids with the downstream CDS;codon_start=1;old_locus_tag=BF4306;product=putative glycosyltransferase;protein_id=CAH09973.1;transl_table=11;translation=length.257
CR626927	GenBank	exon	8054	8827	.	+	1	Parent=BF9343_4192.t01
CR626927	GenBank	gene	8761	8827	.	-	1	ID=BF9343_4193;Name=cobB;locus_tag=BF9343_4193
CR626927	GenBank	mRNA	8761	8827	.	-	1	ID=BF9343_4193.t01;Parent=BF9343_4193
CR626927	GenBank	CDS	8761	8827	.	-	1	ID=BF9343_4193.p01;Parent=BF9343_4193.t01;Dbxref=EnsemblGenomes-Gn:BF9343_4193,EnsemblGenomes-Tr:CAH09974,GOA:Q5L7H8,InterPro:IPR003000,InterPro:IPR026590,InterPro:IPR026591,InterPro:IPR027546,InterPro:IPR029035,UniProtKB/TrEMBL:Q5L7H8;Name=cobB;Note=Similar to Salmonella typhimurium%2C and Salmonella typhi CobB protein or STM1221 or STY1261 or t1699 SWALL:COBB_SALTY (SWALL:P97013) (273 aa) fasta scores: E(): 1.4e-27%2C 44.62%25 id in 242 aa%2C and to Bacteroides thetaiotaomicron putative nicotinate mononucleotide:5%2C6-dimethylbenzimidazole phosphoribosyltransferase BT2975 SWALL:Q8A3H9 (EMBL:AE016938) (234 aa) fasta scores: E(): 6.5e-78%2C 83.55%25 id in 231 aa%2C and to Helicobacter pylori J99 putative Jhp1180 SWALL:Q9ZJW8 (EMBL:AE001545) (234 aa) fasta scores: E(): 1.1e-42%2C 51.08%25 id in 231 aa. CDS overlapping 20 amino acids with the upstream CDS.;codon_start=3;locus_tag=BF9343_4193;old_locus_tag=BF4307;product=putative nicotinate mononucleotide:5%2C6-dimethylbenzimidazole phosphoribosyltransferase;protein_id=CAH09974.1;transl_table=11;translation=length.236
CR626927	GenBank	exon	8761	8827	.	-	1	Parent=BF9343_4193.t01