##gff-version 3 ##sequence-region JAATOH010000049 1 35200 # conversion-by bp_genbank2gff3.pl # organism Lactobacillus crispatus # Note Lactobacillus crispatus strain DSM 29598 363, whole genome shotgun sequence. # date 27-JUL-2020 JAATOH010000049 GenBank region 1 35200 . + 1 ID=JAATOH010000049;Dbxref=BioProject:PRJNA615208,taxon:47770;Name=JAATOH010000049;Note=Lactobacillus crispatus strain DSM 29598 363%2C whole genome shotgun sequence.,The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Michael Gaenzle. \n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. Aug-2014\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 30.0x\nSequencing Technology :: Illumina\n##Genome-Assembly-Data-END##;collection_date=2014;comment1=The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Michael Gaenzle. \n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. Aug-2014\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 30.0x\nSequencing Technology :: Illumina\n##Genome-Assembly-Data-END##;country=Finland: Helsinki;culture_collection=DSM:29598;date=27-JUL-2020;isolation_source=rye sourdough;mol_type=genomic DNA;organism=Lactobacillus crispatus;strain=DSM 29598 JAATOH010000049 GenBank gene 1 8 . - 1 ID=HCN73_09275;Name=HCN73_09275 JAATOH010000049 GenBank mRNA 1 8 . - 1 ID=HCN73_09275;Parent=HCN73_09275 JAATOH010000049 GenBank CDS 1 8 . - 1 ID=HCN73_09275;Parent=HCN73_09275;Name=HCN73_09275;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_013086626.1;product=hypothetical protein;protein_id=MBA2916503.1;transl_table=11;translation=length.122 JAATOH010000049 GenBank exon 1 8 . - 1 Parent=HCN73_09275 JAATOH010000049 GenBank gene 1 1320 . - 1 ID=HCN73_09280;Name=HCN73_09280 JAATOH010000049 GenBank mRNA 1 1320 . - 1 ID=HCN73_09280;Parent=HCN73_09280 JAATOH010000049 GenBank CDS 1 1320 . - 1 ID=HCN73_09280;Parent=HCN73_09280;Name=HCN73_09280;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_013854653.1;product=nucleotidyltransferase;protein_id=MBA2916504.1;transl_table=11;translation=length.439 JAATOH010000049 GenBank exon 1 1320 . - 1 Parent=HCN73_09280 JAATOH010000049 GenBank pseudogenic_exon 1613 2966 . - 1 ID=HCN73_09285;Name=HCN73_09285;Note=frameshifted%3B internal stop%3B incomplete%3B missing C-terminus%3B Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005728711.1;product=transposase;pseudo=_no_value;transl_table=11 JAATOH010000049 GenBank pseudogene 1613 2966 . - 1 ID=HCN73_09285.pseudogene;Alias=HCN73_09285;Name=HCN73_09285;pseudo=_no_value JAATOH010000049 GenBank pseudogenic_exon 3135 3806 . + 1 ID=HCN73_09290;Name=HCN73_09290;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus%3B Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005727562.1;product=group II intron reverse transcriptase/maturase;pseudo=_no_value;transl_table=11 JAATOH010000049 GenBank pseudogene 3135 3806 . + 1 ID=HCN73_09290.pseudogene;Alias=HCN73_09290;Name=HCN73_09290;pseudo=_no_value JAATOH010000049 GenBank gene 4387 6855 . - 1 ID=HCN73_09295;Name=HCN73_09295 JAATOH010000049 GenBank mRNA 4387 6855 . - 1 ID=HCN73_09295;Parent=HCN73_09295 JAATOH010000049 GenBank CDS 4387 6855 . - 1 ID=HCN73_09295;Parent=HCN73_09295;Name=HCN73_09295;Note=The YSIRK form of extended signal peptide directs nascent proteins to the cross-wall site%2C while signal peptides lacking YSIRK direct proteins instead to the cell pole. A large fraction of YSIRK proteins are surface proteins anchored by sortase-mediated processing of a C-terminal LPXTG motif%3B Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:NF015193.1%2CHMM:NF027687.1%2CHMM:TIGR01168.1;product=YSIRK-type signal peptide-containing protein;protein_id=MBA2916505.1;transl_table=11;translation=length.822 JAATOH010000049 GenBank exon 4387 6855 . - 1 Parent=HCN73_09295 JAATOH010000049 GenBank gene 7142 8740 . + 1 ID=HCN73_09300;Name=HCN73_09300 JAATOH010000049 GenBank mRNA 7142 8740 . + 1 ID=HCN73_09300;Parent=HCN73_09300 JAATOH010000049 GenBank CDS 7142 8740 . + 1 ID=HCN73_09300;Parent=HCN73_09300;Name=HCN73_09300;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011102218.1;product=FGGY-family carbohydrate kinase;protein_id=MBA2916506.1;transl_table=11;translation=length.532 JAATOH010000049 GenBank exon 7142 8740 . + 1 Parent=HCN73_09300 JAATOH010000049 GenBank gene 8759 9487 . + 1 ID=HCN73_09305;Name=HCN73_09305 JAATOH010000049 GenBank mRNA 8759 9487 . + 1 ID=HCN73_09305;Parent=HCN73_09305 JAATOH010000049 GenBank CDS 8759 9487 . + 1 ID=HCN73_09305;Parent=HCN73_09305;Name=HCN73_09305;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003676120.1;product=L-ribulose-5-phosphate 4-epimerase;protein_id=MBA2916507.1;transl_table=11;translation=length.242 JAATOH010000049 GenBank exon 8759 9487 . + 1 Parent=HCN73_09305 JAATOH010000049 GenBank gene 9628 10722 . + 1 ID=HCN73_09310;Name=HCN73_09310 JAATOH010000049 GenBank mRNA 9628 10722 . + 1 ID=HCN73_09310;Parent=HCN73_09310 JAATOH010000049 GenBank CDS 9628 10722 . + 1 ID=HCN73_09310;Parent=HCN73_09310;Name=HCN73_09310;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012391621.1;product=GntR family transcriptional regulator;protein_id=MBA2916508.1;transl_table=11;translation=length.364 JAATOH010000049 GenBank exon 9628 10722 . + 1 Parent=HCN73_09310 JAATOH010000049 GenBank gene 10861 11820 . - 1 ID=HCN73_09315;Name=HCN73_09315 JAATOH010000049 GenBank mRNA 10861 11820 . - 1 ID=HCN73_09315;Parent=HCN73_09315 JAATOH010000049 GenBank CDS 10861 11820 . - 1 ID=HCN73_09315;Parent=HCN73_09315;Name=HCN73_09315;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003675957.1;product=beta-galactosidase small subunit;protein_id=MBA2916509.1;transl_table=11;translation=length.319 JAATOH010000049 GenBank exon 10861 11820 . - 1 Parent=HCN73_09315 JAATOH010000049 GenBank gene 11804 13675 . - 1 ID=HCN73_09320;Name=HCN73_09320 JAATOH010000049 GenBank mRNA 11804 13675 . - 1 ID=HCN73_09320;Parent=HCN73_09320 JAATOH010000049 GenBank CDS 11804 13675 . - 1 ID=HCN73_09320;Parent=HCN73_09320;Name=HCN73_09320;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_013086596.1;product=beta-galactosidase;protein_id=MBA2916510.1;transl_table=11;translation=length.623 JAATOH010000049 GenBank exon 11804 13675 . - 1 Parent=HCN73_09320 JAATOH010000049 GenBank gene 13847 15274 . + 1 ID=HCN73_09325;Name=araA;locus_tag=HCN73_09325 JAATOH010000049 GenBank mRNA 13847 15274 . + 1 ID=HCN73_09325;Parent=HCN73_09325 JAATOH010000049 GenBank CDS 13847 15274 . + 1 ID=HCN73_09325;Parent=HCN73_09325;eC_number=5.3.1.4;Name=araA;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007123496.1;locus_tag=HCN73_09325;product=L-arabinose isomerase;protein_id=MBA2916511.1;transl_table=11;translation=length.475 JAATOH010000049 GenBank exon 13847 15274 . + 1 Parent=HCN73_09325 JAATOH010000049 GenBank gene 15456 17120 . - 1 ID=HCN73_09330;Name=HCN73_09330 JAATOH010000049 GenBank mRNA 15456 17120 . - 1 ID=HCN73_09330;Parent=HCN73_09330 JAATOH010000049 GenBank CDS 15456 17120 . - 1 ID=HCN73_09330;Parent=HCN73_09330;Name=HCN73_09330;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:NF016497.1%2CHMM:NF027687.1;product=glycoside hydrolase family 43 protein;protein_id=MBA2916512.1;transl_table=11;translation=length.554 JAATOH010000049 GenBank exon 15456 17120 . - 1 Parent=HCN73_09330 JAATOH010000049 GenBank gene 17297 19243 . + 1 ID=HCN73_09335;Name=HCN73_09335 JAATOH010000049 GenBank mRNA 17297 19243 . + 1 ID=HCN73_09335;Parent=HCN73_09335 JAATOH010000049 GenBank CDS 17297 19243 . + 1 ID=HCN73_09335;Parent=HCN73_09335;Name=HCN73_09335;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008215518.1;product=glycoside hydrolase family 127 protein;protein_id=MBA2916513.1;transl_table=11;translation=length.648 JAATOH010000049 GenBank exon 17297 19243 . + 1 Parent=HCN73_09335 JAATOH010000049 GenBank gene 19246 20694 . + 1 ID=HCN73_09340;Name=HCN73_09340 JAATOH010000049 GenBank mRNA 19246 20694 . + 1 ID=HCN73_09340;Parent=HCN73_09340 JAATOH010000049 GenBank CDS 19246 20694 . + 1 ID=HCN73_09340;Parent=HCN73_09340;Name=HCN73_09340;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003552984.1;product=alpha-N-arabinofuranosidase;protein_id=MBA2916514.1;transl_table=11;translation=length.482 JAATOH010000049 GenBank exon 19246 20694 . + 1 Parent=HCN73_09340 JAATOH010000049 GenBank gene 20787 21416 . - 1 ID=HCN73_09345;Name=HCN73_09345 JAATOH010000049 GenBank mRNA 20787 21416 . - 1 ID=HCN73_09345;Parent=HCN73_09345 JAATOH010000049 GenBank CDS 20787 21416 . - 1 ID=HCN73_09345;Parent=HCN73_09345;Name=HCN73_09345;Note=Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.;codon_start=1;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;product=hypothetical protein;protein_id=MBA2916515.1;transl_table=11;translation=length.209 JAATOH010000049 GenBank exon 20787 21416 . - 1 Parent=HCN73_09345 JAATOH010000049 GenBank gene 21661 23019 . + 1 ID=HCN73_09350;Name=HCN73_09350 JAATOH010000049 GenBank mRNA 21661 23019 . + 1 ID=HCN73_09350;Parent=HCN73_09350 JAATOH010000049 GenBank CDS 21661 23019 . + 1 ID=HCN73_09350;Parent=HCN73_09350;Name=HCN73_09350;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:NF013697.1;product=extracellular solute-binding protein;protein_id=MBA2916516.1;transl_table=11;translation=length.452 JAATOH010000049 GenBank exon 21661 23019 . + 1 Parent=HCN73_09350 JAATOH010000049 GenBank gene 23093 24010 . + 1 ID=HCN73_09355;Name=HCN73_09355 JAATOH010000049 GenBank mRNA 23093 24010 . + 1 ID=HCN73_09355;Parent=HCN73_09355 JAATOH010000049 GenBank CDS 23093 24010 . + 1 ID=HCN73_09355;Parent=HCN73_09355;Name=HCN73_09355;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020279026.1;product=sugar ABC transporter permease;protein_id=MBA2916517.1;transl_table=11;translation=length.305 JAATOH010000049 GenBank exon 23093 24010 . + 1 Parent=HCN73_09355 JAATOH010000049 GenBank gene 24027 24875 . + 1 ID=HCN73_09360;Name=HCN73_09360 JAATOH010000049 GenBank mRNA 24027 24875 . + 1 ID=HCN73_09360;Parent=HCN73_09360 JAATOH010000049 GenBank CDS 24027 24875 . + 1 ID=HCN73_09360;Parent=HCN73_09360;Name=HCN73_09360;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004621899.1;product=carbohydrate ABC transporter permease;protein_id=MBA2916518.1;transl_table=11;translation=length.282 JAATOH010000049 GenBank exon 24027 24875 . + 1 Parent=HCN73_09360 JAATOH010000049 GenBank gene 24883 25554 . + 1 ID=HCN73_09365;Name=HCN73_09365 JAATOH010000049 GenBank mRNA 24883 25554 . + 1 ID=HCN73_09365;Parent=HCN73_09365 JAATOH010000049 GenBank CDS 24883 25554 . + 1 ID=HCN73_09365;Parent=HCN73_09365;Name=HCN73_09365;Note=Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.;codon_start=1;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;product=hypothetical protein;protein_id=MBA2916519.1;transl_table=11;translation=length.223 JAATOH010000049 GenBank exon 24883 25554 . + 1 Parent=HCN73_09365 JAATOH010000049 GenBank gene 25634 26578 . + 1 ID=HCN73_09370;Name=HCN73_09370 JAATOH010000049 GenBank mRNA 25634 26578 . + 1 ID=HCN73_09370;Parent=HCN73_09370 JAATOH010000049 GenBank CDS 25634 26578 . + 1 ID=HCN73_09370;Parent=HCN73_09370;Name=HCN73_09370;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010748728.1;product=family 43 glycosylhydrolase;protein_id=MBA2916520.1;transl_table=11;translation=length.314 JAATOH010000049 GenBank exon 25634 26578 . + 1 Parent=HCN73_09370 JAATOH010000049 GenBank gene 26598 28091 . + 1 ID=HCN73_09375;Name=HCN73_09375 JAATOH010000049 GenBank mRNA 26598 28091 . + 1 ID=HCN73_09375;Parent=HCN73_09375 JAATOH010000049 GenBank CDS 26598 28091 . + 1 ID=HCN73_09375;Parent=HCN73_09375;Name=HCN73_09375;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003711626.1;product=alpha-N-arabinofuranosidase;protein_id=MBA2916521.1;transl_table=11;translation=length.497 JAATOH010000049 GenBank exon 26598 28091 . + 1 Parent=HCN73_09375 JAATOH010000049 GenBank gene 28102 29124 . + 1 ID=HCN73_09380;Name=HCN73_09380 JAATOH010000049 GenBank mRNA 28102 29124 . + 1 ID=HCN73_09380;Parent=HCN73_09380 JAATOH010000049 GenBank CDS 28102 29124 . + 1 ID=HCN73_09380;Parent=HCN73_09380;Name=HCN73_09380;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003629442.1;product=galactose mutarotase;protein_id=MBA2916522.1;transl_table=11;translation=length.340 JAATOH010000049 GenBank exon 28102 29124 . + 1 Parent=HCN73_09380 JAATOH010000049 GenBank gene 29190 30458 . + 1 ID=HCN73_09385;Name=HCN73_09385 JAATOH010000049 GenBank mRNA 29190 30458 . + 1 ID=HCN73_09385;Parent=HCN73_09385 JAATOH010000049 GenBank CDS 29190 30458 . + 1 ID=HCN73_09385;Parent=HCN73_09385;Name=HCN73_09385;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008210491.1;product=glycoside hydrolase family 27 protein;protein_id=MBA2916523.1;transl_table=11;translation=length.422 JAATOH010000049 GenBank exon 29190 30458 . + 1 Parent=HCN73_09385 JAATOH010000049 GenBank gene 30517 31626 . - 1 ID=HCN73_09390;Name=HCN73_09390 JAATOH010000049 GenBank mRNA 30517 31626 . - 1 ID=HCN73_09390;Parent=HCN73_09390 JAATOH010000049 GenBank CDS 30517 31626 . - 1 ID=HCN73_09390;Parent=HCN73_09390;Name=HCN73_09390;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_013642254.1;product=ABC transporter ATP-binding protein;protein_id=MBA2916524.1;transl_table=11;translation=length.369 JAATOH010000049 GenBank exon 30517 31626 . - 1 Parent=HCN73_09390 JAATOH010000049 GenBank gene 31751 32599 . - 1 ID=HCN73_09395;Name=HCN73_09395 JAATOH010000049 GenBank mRNA 31751 32599 . - 1 ID=HCN73_09395;Parent=HCN73_09395 JAATOH010000049 GenBank CDS 31751 32599 . - 1 ID=HCN73_09395;Parent=HCN73_09395;Name=HCN73_09395;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: protein motif:HMM:NF024945.1;product=hypothetical protein;protein_id=MBA2916525.1;transl_table=11;translation=length.282 JAATOH010000049 GenBank exon 31751 32599 . - 1 Parent=HCN73_09395 JAATOH010000049 GenBank gene 32801 35200 . + 1 ID=HCN73_09400;Name=HCN73_09400 JAATOH010000049 GenBank mRNA 32801 35200 . + 1 ID=HCN73_09400;Parent=HCN73_09400 JAATOH010000049 GenBank CDS 32801 35200 . + 1 ID=HCN73_09400;Parent=HCN73_09400;Name=HCN73_09400;Note=Derived by automated computational analysis using gene prediction method: Protein Homology.;codon_start=1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005726898.1;product=phosphoketolase family protein;protein_id=MBA2916526.1;transl_table=11;translation=length.799 JAATOH010000049 GenBank exon 32801 35200 . + 1 Parent=HCN73_09400